Array 1 2109-1472 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHG01000024.1 Gilliamella apicola strain Choc4-2 Gilliamella_apicola_Choc4-2_contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 2108 26 100.0 35 .......................... CCGTTGATAATTATGCTAATTTAGTATTAATACGA 2047 26 100.0 35 .......................... CCGTAGAGTATTATAAACGTGAAATGAACAGAACA 1986 26 100.0 35 .......................... CCGTCTTGCGCTAATCGCTGGTGTTGTATCAAACT 1925 26 100.0 35 .......................... CCGCCTTTTTTTGCACATCCGTTAAACCACTCAAA 1864 26 100.0 35 .......................... CCGAAATTGACAAAACTACGCAGGATTAATCACAT 1803 26 100.0 35 .......................... CCGCCCTTTTAAAAATTTAACAACTTTGTCCCAGT 1742 26 100.0 35 .......................... CCGCAATCCAACGGCAAATGGCTGTTTGAAAAATA 1681 26 100.0 35 .......................... CCGCCGTTTGGATGAGAATGAACAATTGCGGTTAT 1620 26 100.0 36 .......................... CCGGTGAATAGAAATATTCACAGGATAACTAATGAA 1558 26 100.0 35 .......................... CCGGAGTTATGTTCAGATAACGATGGATTGATTAT 1497 26 88.5 0 .......................CCC | ========== ====== ====== ====== ========================== ==================================== ================== 11 26 99.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CTATTTGAAGAAGAAAAGCAACAACAAAAAGCGCTTATTGAAGCGGGATTAGATAAACTTGGCATCACCGAGCCTTATCAGCGAGACTTTGCCATGAAAAAAGTGGACGAAGCGCACGAACATGTCAAAAGCAACTGGCAACTAGAAAAAGAAGAGCGCATTAACCCGTTATTCTGTATTAAACAATCGATAATAATTCAGAGGATAATAAACCTTGTATGATCGTAATTGTGTAAAAAACACACCATAAATAAGTAGGGCAAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAACGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : CCCTTTATCTTAATGCGAAAACCCTAACCCACTTAATTAATAAAATTTTAAGTGGGCTTAAAAGCAGCAACCTAAAAAAACTTGGCTCACTAAACTTATCTTAAATTTCAATAAATTAACTTCAGTTAAATATTGCAAATTGTGTAAAAATCGTGTAATTTTTATGCCCAATTTTAGTTATCATTATTGATTATTAAAATTACCGATAAAAGCAGATAAATATGACAAAACTAAATAAAAATAAGTAACAAGGTAGTATAGTTAAGGATGTCTCGGTTGTTAGTATATCAAATGCCCACATTATGCAGCATGATATTCATTCATTTGCATTGGTTTATTCACAATAAATTTGATTATTGTCCCTTACGGTTTGGTTTTCTAATAAAAACAAAGCAATCACGCTATCAATGTAACAATCCTCAACGCCAGATTTATGGCTATCTATTCATGCCCCTTAAAACAACTAATCATTAATCCATTTAATGGGGTAAAACGCACTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 699-1397 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHG01000013.1 Gilliamella apicola strain Choc4-2 Gilliamella_apicola_Choc4-2_contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 699 26 100.0 35 .......................... CCGAACAATAAAGTTACCAATTTTGAGATAGCATT 760 26 100.0 36 .......................... CCGGGCTTATGTCAATAAACGGACTGGCTTTTATCC 822 26 100.0 35 .......................... CCGTTGATAAATAGTCCGGGTCGTACTCAAGACTG 883 26 100.0 35 .......................... CCGCCATTGCGGATCAGTGTTCACCCGTTATTGTT 944 26 100.0 35 .......................... CCGCCTGTTTTTAACCCTAACTCCTCTTGTGTACG 1005 26 100.0 35 .......................... CCGCAAATTTTGTTGTAAACCTTACGGGTAATGTT 1066 26 100.0 35 .......................... CCGCAAAAATAAAAAAGAACCATAATCACGTCGTT 1127 26 100.0 35 .......................... CCGTATGAATTTTTCTATTTCAGCAAATTGTTCAG 1188 26 96.2 35 ..............T........... CCGATAAAACTGATAGTTTTATTACTGAGCTTTTT 1249 26 100.0 36 .......................... CCGCATTACATAGCCTTTCTGTAGATACGTTTCATC 1311 26 100.0 35 .......................... CCCCTATACAGGTACTCGAGACATAACTGGACGGC 1372 26 84.6 0 .....................T.TCT | ========== ====== ====== ====== ========================== ==================================== ================== 12 26 98.4 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ACCCATGCCATATTTACGGCACAGTTCTTTAACCGGAATACCCGCTTCAGCTTCTTTTAAAATAGCGACGATTTGATGTTCAGTCATTTTTTTCATAATTAAATCCCCTTTTCTTTTATCATAGAGAATTTTCTACTTTTTTGCTGTACTATTTTAGGGGATAGTTACATTCTATATTAAACAATCGATAGTAATTCAGTGGATAATAAACCTTGTATGATAGTGAACGTGTGTAAAAAATATACCATAAATCAGTAGGGCAAAGCTCACGCTAATACGAGAGTAAAAGATAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTATTTCTTGGTGGAACGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAAATAGCTACAATTAGA # Right flank : TCAATCCATAAAATCCTTAATACCTATCTATAAAATATCGCATAATGCGGTTATCTACCGTTAACTCAGGGTGAAATGAACAAACCAAGATATTATCTTGTTGTGCCATTACACAATGATCATTAACGAAAGCAAGTTGTTTGACTTGTTTACTTGCTTTTATAATATACGGTGCCCGTATAAAAACAGCAGGAATTTGTTGACCGATTAGTTCAATATTTAAAAGTGTTTCAAAGCTGTTAATTTGTCGCCCAAAGCCATTGCGCTCAACACTAATATCGATTAAGCCAAGCTGTTCTACTTCATTATGTGTTGTGGTTTTACCGCAAAGCACAAGCCCTGCACAAGTTCCTAAAACTCCTTTACCTTGTTTAGCTAATTGTTTTATTGGCTCTATTAATCCATTTTGTTTTATTAAGCGACTAATAGTGGTTGACTCTCCGCCGGGAATAATTAAGCCATCTAAATTAGCTAATTGTTCGGGTTTTTGAACGAGTGTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 260-833 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHG01000029.1 Gilliamella apicola strain Choc4-2 Gilliamella_apicola_Choc4-2_contig36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 260 26 100.0 35 .......................... CCGCAAGCCGAAAACCTTAAAAAATACAATGATTT 321 26 100.0 35 .......................... CCGTTTTCAACGACAACGGCAGGTAAATTAGTTTT 382 26 100.0 35 .......................... CCGGGTTCTGGGTTTTTTCATCTAGAGCAACGGGA 443 26 100.0 35 .......................... CCGTAAGCGCGAACTAGAAAACGAATCTATTAAAC 504 26 100.0 35 .......................... CCGGGTGGTTTCATTAGTTCAAATAACTTTAATTG 565 26 100.0 35 .......................... CCTCATCGCATTCAATTAATTTTGTCAAAACTAGC 626 26 100.0 35 .......................... CCGCCAGCTTTGTTGGTTCGAATGTGATATCTGTG 687 26 100.0 35 .......................... CCGCAGAAAAAGACAAGGACAGCGTAATAAATGAT 748 26 100.0 35 .......................... CCGGAGCCAACTCTTTGGTATCAATATCCTGTGGT 809 25 92.3 0 ......................-.C. | ========== ====== ====== ====== ========================== =================================== ================== 10 26 99.2 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ACACCATAAATAAGTAGGGCAAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAACGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGAG # Right flank : ACCCCTTTATCTTAATGCGAAAACCCTAACCCCACTTAATTGATAAAATTTTAAGTGGGGCTTAAAAGCAGCAACCTAAAAAAACATGACTCACTAAGCTTATCTGAAATTTCAATAAATTAACTTCAATTAAATATTGCAAATTCTATAAAAACCGTGTAATTTTTATGCCCAATTTTAGTTATCATTATTGATTATTAAAATTACCGATAAAAATAGATAAATACGACAAAACTAAATAAAAATAAGTAGCAAGGTAGTATAGTTAAGGATGTCTCGGTTGTTAGTATATCAAATGCCCACATTATGCAGCATGATATTCATTCATTTGCATTGGTTTATTCACAATAAATTTGATTATTGTCCCTTACGGTTTGGTTTTCTAATAAAAACAAAGCAATCACGCTATCAATGTAACAATCCTCAACGCCAGATTTATGGCTATCTATTCATGCCCCCCCTTAAAACAACTAATCATTAATCCATTTAATGGGGTAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13857-13648 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHG01000030.1 Gilliamella apicola strain Choc4-2 Gilliamella_apicola_Choc4-2_contig37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 13856 26 100.0 35 .......................... CCGCCCTGCAATCGCTCGCATTCAACTGGTGTTAA 13795 26 100.0 35 .......................... CCTGCAGTCAGAGCTACAACATGGTAACCCTGTAC 13734 26 100.0 35 .......................... CCGAGGTGATAAGATTTAATTCTTATTCATTAACT 13673 26 96.2 0 .C........................ | ========== ====== ====== ====== ========================== =================================== ================== 4 26 99.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TCCCAAATCACCTGTTGATTGCGAACGGCGATCTTCAATATTATCACTCTCTCTTTGGTCTCTCCAACGCATAGTAATTATCTCATCAGTTTTGGTAAGTTTATTTTAAAGGATAATAGAAAAGGATACTAGGTTAAAGTTTCTACAATTTTGGTGTGATTTTGATTTTATGCGTATTACGTTTTGAGCATAAAAATTATTGTTAGTCTAAAGATTAACCCTTACGAAAGTAAAACCGATTCCTTATTAAAAGGTCGGAAACTATAACCATAAAAAAATCGGTAAGAATTAATATTTTTTTATCTAACTATTGTTTAATTTACGTATCATGATGAATTTACATTAAAAATTGGTACATTTTGGTAAAACGACATAAATTAAAGTAATCTTACTTATAGTATATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTATCGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : TTCTAAACAGCATTAGTTAGCGTTGTTTTAAAATAGTCATGATTGGATGCAGCAAGCTTTAAATTCTTTTGTGGTTAGGTTTCGGACGTTTAGTCTTTAGTGACACTAAAATGAATGTAGTGTTCACGTCCGAGTAAAGGAAATTTAGCGTGAAATTTCCTTTACAATCCTAAGCTCGCCGCCAGAAGTACTGGTCACTGCGTGACTGCCCTCGCTTTGTTAATTAGCATTAAACGAACCGATGAGTATTGCACTTCCTTGTGCGCCCTCATCTCATTTGGCATCCTGCCCAATGTTCTATGCTAATTAACTCACTCGGCAGTACTTAAGCGGAAATACAAATTCAATGATTTAATTAGATTTTTAACATCATTAATAAAAATTTATTGTCTATCCACTTAATAATTGTTTGTGCTAATTCCGTGCCATACAAAGTGCTGACAACTAAGGCTGGTTAGCAAGTCAAACAAGGCGGTTTGGCAAGTTCGTGTTTTGTTTGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18104-18313 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHG01000004.1 Gilliamella apicola strain Choc4-2 Gilliamella_apicola_Choc4-2_contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 18104 26 100.0 35 .......................... CCGAGATTGACGATATCGGTAAATCTGTCACGGAT 18165 26 100.0 35 .......................... CCGCTATTTGATAACAAACTGCACCACAACTTTAA 18226 26 100.0 36 .......................... CCGTAATTAGGTATATTATGAGTCAAAACCACAAAC 18288 26 92.3 0 T..........T.............. | ========== ====== ====== ====== ========================== ==================================== ================== 4 26 98.1 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CTAATTGAAGAAGTACTATCTGCAGGGGGGATTGAACCACCCCTTCCACCTGATGACATACAACCCCCTGCTATCCCCGAACCACAATCACTTGCTGATAGTGGTTTTAGGAGTTACTAACTATGAGTATGTGCGTTGTGGTTACCGAAAATGTACCACCTCGATTAAGAGGTCGTTTAGCTGTATGGTTATTAGAAATTAGAGCTGGTGTTTATATTGGTGATGTACCTCGCCCCATTCGGGAAATGATATGGCAGCAAATCATTGAACTAGCTGAAGAAGGCAATGTTGTCCTTGCGTGGGCAACAAATACCGAATCTGGATTTGATTTCCAAACTTATGGTACAAATAGAAGAGTTCCGGTAGATCTGGATGGGTTAAGATTAGTTTCTTTTTTACCTGTTTAAAATCAATAGGTTAAATTTTTTTAAAATTTTCAAAAACCTGGTAGAATTTATTCATTGCTATAACTCTAAATAAAACAAATAGCTACATTTGGA # Right flank : ATTCTAAACAACATTAGTTAAAGTTGCTCTAAAATGGCAATAATTTGGCCTTGCAAACCTTAAAATTTTTAGTGCGGTTTTAGGTGTTTGAAATATTAATGCTATTTCTTTCTTCAATGCTTGAAATGCCTGAAATTAAAACCGCACAAAACATCGTTAGAGGTTGTCGTTTTGCTATTCTTAATAATAAACAAACCGTTGTTATTAATAGTCATGTCAACAAAGGGACATTATCTATTTTAGTTTTTAGTTATTTTATGACCAAAATTAATGCCTATTCTTTCAATGAAGTAATAGGTAAAAATGCTAATCAATAATGTTATCAACATGGATACAAGGCTATTTAATAAAAAGTTTCCGCTTTTCATTATTACGCCGTTTATTAGAAATAAAACAAGCCCATGTATTAGATAAAAACTGTAGCTTAATTTACCTAATGTTATGAAGATTTTTGATTTGAGTAGTCCAAATACACTATTGTTGCTTGCAATGAGAATAAA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37171-37312 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHG01000033.1 Gilliamella apicola strain Choc4-2 Gilliamella_apicola_Choc4-2_contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 37171 26 96.2 35 A......................... CCGAGGTGATAAGGTTCAATTCTTGTCCATTAACC 37232 26 100.0 29 .......................... CCGTAGACAAATTGTAATACCTCAAATAA 37287 26 84.6 0 .A...................TGT.. | ========== ====== ====== ====== ========================== =================================== ================== 3 26 93.6 32 GCGTTCCCTGTATACACAGGGATAAA # Left flank : CATAGCAAATTGGTTTGTACCGGTGGTAAATTTCAAAAAATTTGATATAATGCCGATTTTTTAAGCCCAAGGAATTTAACGGCGATGAAATATTGTACTTTGTGTCAAAGAAATGTAATACCAAAAAGAAAAATTGGAACGGGAACGCTTATTGGTATTATTTTTACAGGCTTTATTTGGGTTTTATTTATCCCTTTTTACAAAAAAAGATGCCCACTATGCCACGGAGATAGACTAGTTAAACCTGAGAAGGCTTTGCAAAATTCAAATAATCATCAAGCAATTCAGAATCCGAATATATCCGTTTCTGATGAATTGAAAAAATTAAATGATCTAAAAGAAAGCGGCGTTTTATCGCAGGAGGAGTTTGAAAAACAAAAAATAAAATTACTGAATTAATGATTAGATGCCGGTTTTCGAACCCCTGACGCCCAACAAATAATGTTGACTCTGTTTGTATCTTAGTATATCTTCAAATTACCTACCCAGCATGGGTGGAT # Right flank : ACCCCCCTCTTTCGAGGGGGTTTTATTTAACGGGCTTTATTTTGCGTCGCCAATTCATTAATGGCTGCCGCTGCCAAAAAATTACTCCGATCCCTATAAACCGAGCTCGGCGCTTTAACTGCATTATCTATTCTATCGATCAGAATATCTGGCAATGTGATATTAATTCTTTTTTGTTTACCAACAAATGATGATAAATCAACGTCAATAATGACCCATGTATCGTAATGAGCATATTCACCGTTATTTTTATACGAAACATGATCATTATGAATATCGTTAACATCATAATCACCTGATTCAATCATATCCTGAACAGTTAACAAAATAGCCTCAGTTGCCATTGCTGGGATGTCGTGTTCTTTGTCGGCGGCAGAATAACAACTATATTTTTCATTGCATAACGCAGGCACGACAATGCCGTAAGCGGTATCGCTATCGTTCGGGGTTTCAATGCCAAGAGTAAAAAACATAATCCCTCCAAAAGTTGGCGGGCTATA # Questionable array : NO Score: 3.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 684-1258 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHG01000040.1 Gilliamella apicola strain Choc4-2 Gilliamella_apicola_Choc4-2_contig46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 684 26 100.0 35 .......................... CCGCAGAATCAAACATGTATCAAAATTACAGTTAT 745 26 100.0 35 .......................... CCGATTTGTATTTTTCTCGTAACTGATCAACTTTA 806 26 100.0 35 .......................... CCGAACAAGAATATCAATCATGCGGTTAGGCTATC 867 26 100.0 35 .......................... CCGTCCACGAACGACAGACCGCTTTGATAGTTTTG 928 26 100.0 35 .......................... CCGATCTCATCTGCGTAATTTCGAGAATGTGATTG 989 26 100.0 35 .......................... CCGTTAATATTTACTTGGAGTATAAGTGGCAACTA 1050 26 100.0 35 .......................... CCGATGGTCGCTATTCCATCGATAGTCGGTTTAAT 1111 26 100.0 35 .......................... CCGACAGAAAAATACGAGATCGCTAAAGTCAAAAT 1172 26 100.0 35 .......................... CCGGAAAAAATGGTTTTACACGTGATAATCCACAA 1233 26 88.5 0 .......................CCC | ========== ====== ====== ====== ========================== =================================== ================== 10 26 98.8 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CTATTTGAAGAAGAAAAGCAACAACAAAAAGCGCTTATTGAAGCGGGATTAGATAAACTTGGCATCACCGAGCCTTATCAGCGAGACTTTGCCATGAAAAAAGTGGACGAAGCGCACGAACATGTCAAAAGCAACTGGCAACTAGAAAAAGAAGAGCGCATTAACCCGTTATTCTGTATTAAACAATCGATAATAATTCAGAGTATAATAAACCTTGTATGATCGTAATTGTGTAAAAAACACACCATAAATAAGTAGGGCAAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAGCGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : CCCTTTATCTTAATGCGAAAACCCTAACCCCACTTAATTGATAAAATTTTAAGTGGGGCTTAAAAGCAGCAACCTAAAAAAACTTGGCTCACTAAACTTATCTTAAATTTCAATAAATTAACTTCAGTTAAATATTGCAAATTGTGTAAAAATCGTGTAATTTTTATGCCCAATTTTAGTTATCATTATTGATTATTAAAATTACCGATAAAAGCAGATAAATATGACAAAACTAAATAAAAATAAGTAACAAGGTAGTATAGTTAAGGATGTCTCGGTTGTTAGTATATCAAATGCCCACATTATGCAGCATGATATTCATTCATTTGCATTGGTTTATTCACAATAAATTTGATTATTGTCCCTTACGGTTTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 684-892 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHG01000042.1 Gilliamella apicola strain Choc4-2 Gilliamella_apicola_Choc4-2_contig48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 684 26 100.0 35 .......................... CCGGTGTAACTAATATCTGGTCTTTTTTTTTATTC 745 26 100.0 35 .......................... CCGTTAATGGCTTCCGCTCCGCTTTTAATAATAAT 806 26 100.0 35 .......................... CCGGAAAAAATGGTTTTACACGTGGTAATCCACAA 867 26 84.6 0 ......................ACCC | ========== ====== ====== ====== ========================== =================================== ================== 4 26 96.2 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CTATTTGAAGAAGAAAAGCAACAACAAAAAGCGCTTATTGAAGCGGGATTAGATAAACTTGGCATCACCGAGCCTTATCAGCGAGATTTTGCCATGAAAAAAGTGGACGAAGCGCACGAACATGTCAAAAGCAACTGGCAACTAGAAAAAGAAGAGCGCATTAACCCGTTATTCTGTATTAAACAATCGATAATAATTCAGAGGATAATAAACCTTGTATGATCGTAATTGTGTAAAAAACACACCATAAATAAGTAGGGCAAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAACGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : CCCTCTTTATCTTAATGCTAAAACCCTAACCCCACTTAATTGATAAAATTTTAAGTGGGCTTAAAAGCAGCAATCTAAAAAAACATGGCTCACTAAACTTATCTTAAATTTCAATAAATTAACTTCAATTAAATATTGCAAATTCTATAAAAACCGTGTAATTTTTATGCCCAATTTTAGTTATCATTATTGATTATTAAAATTACCGATAAAAACAGATAAATATGAAAAAACTAAATAAAAATAAGTAGCAAGGTAGTAAAGGAAAAAAATGGTAAAACATTTAGATAAAATCGTCGAACAAGCAGGACAAGCAGGGAAAGATTTGCTTAGCCAATTAACAAATAAAGTTAGCCATAACCGTTACACACTAACCATTGATGAACTCAGCACTCCTATATCGGTGTTAAACGTCAAAGGCGAAGAGGCCTTAAACCAGCTGTGGCATTACACCATTACTTTTACCAGCGCCAATAAAACCCTATCTACCGATGCTTTTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 78293-78501 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHG01000065.1 Gilliamella apicola strain Choc4-2 Gilliamella_apicola_Choc4-2_contig69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 78293 26 96.2 35 ..A....................... CCGTGAATGACCCAAAATACCCAACAACGCCGCCG 78354 26 100.0 35 .......................... CCGAAAAATTAATAAGGTTGGCATGCAGTGATTTT 78415 26 100.0 35 .......................... CCGCTGAAATTTTACTTTTACGAGTTTTTTTGTTC 78476 26 88.5 0 .......................CCC | ========== ====== ====== ====== ========================== =================================== ================== 4 26 96.2 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ATTTGTACCTAGCATGTTTATGACAGGAATTGCATTTGGCTGGTTAGGATTTTTATTATCTTGGAAAACCAATAATCCAGGCGAAGGAGCTAGTAAAATGATTTTCTTAGTTCCGCCGGGATTCATTATGGGCGGCTCCACCATGGCTGTAGGTATTATGCCAATATGGACTTACTATATTAGCCACGCCTTTCCTTTAGTTTGGTTATTTCGGTTTTTTCGAGATATCGCCATGCGAGGGCGTTCACTAGTGGATATGTTAGCAACGTATGGCACATTTATTATTTATTTAACTGTTATTGCTTTTGTGGTAATGATCGTTTTTGAACGAACGAAAAAAACAGCTACCCAACCACAATTGAATCAAAACACTATAAATAACTAATTGAAAAATTGATACATTTACTTGGTGAAGAAAATAGTATTTTAATAAATAAATTAAGTGCTTTTAAAACTTCATCGATTAACATTTGAAATGCTCTTTGCCATTTAGAACAAAA # Right flank : CCCCTTTATCTTAATGCGAAAACCCTAACCCCAGTTAATTGATAAAATTTTAAGTGGGGCTTAAAAGCAGCAACCTAAAAAAACATGACTCACTAAGCTTATCTTAAATTTCAATAAATTAACTTCAATTAAATATTGCAAATTCTATAAAAACCGTGTAATTTTTATGCCCAATTTTAATTATCATTATTGATTATTAAAATTACCGATAAAAATAGATAAATATGACAAAACTAAATAAAAATAAGTAGCAAGGTAGTATAGGTAAGGATGTCACGGTTGTTAGTATATCAAATGCCCACATTATGCAGCATGATATTCATTCATTTGCATTGGTTTATTCACAATAAATTTGATTATTGTCCCTTACGGTTTGGTTTTCTAATAAAAACAAAGCAATCACGCTATCAATGTAACAATCCTCAACGCCAGATTTATGGCTATCTATTCATGCCCCTTAAAACAACTAATCATTAATCCATTTAATGGGGTAAAACGCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1001-730 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHG01000059.1 Gilliamella apicola strain Choc4-2 Gilliamella_apicola_Choc4-2_contig63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 1000 26 100.0 35 .......................... CCGATGCGCAGAAAGATTATTTTCAGACAAAGCAC 939 26 100.0 36 .......................... CCGTATTAATTTAGTTGACGGGTTTTATATTAAATC 877 26 100.0 35 .......................... CCGGTTTTTTGCTCCTCGTCCCACTCGATCCGCCC 816 26 100.0 35 .......................... CCGCCTGAACGTTGGCGGGATAGTATGGTTATTGC 755 26 88.5 0 .......................CCC | ========== ====== ====== ====== ========================== ==================================== ================== 5 26 97.7 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ATAAGTAAACTAATACAAGTTAGAATATTCCTAAAATTTGCAAACATACCACTACTAATCTCTAAATATCGATCGTTATAGGCATAGGAAGATTTTATTGGTTTGAAGTTATTATTGACGGATTCTTGAGTATAGTCTTTGGGCTTCTTTTGGCGTCATATTATCGCTAGTATAGCCCATTTTCAATTTTTTGTGGGGTTTGGGTTTTTTAAGCCTTGAGAGTACAAAGACTATTTATCCGCATAATGTTAAAAATATCGAAAATTATAACATAAAACTGGGTAAAATTAATATTTGTTTTTATTTAGGGAGATGTAATTTTCGTATCTTGATGAATTTATATTAAAAATAGAGTCATTTTGGTAGGGCGACATAAATTGAATTGAGCTTGTTTTTTTATTTTTTAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATATCTACAATTAGA # Right flank : CCTCTTTATCTTAATGCTAAAACCCTAACCCCAGTTAATTGATAAAATTTTAAGTGGGCTTAAAAGCAGCAACCTAAAAAAACATGACTCACTAAGCTTATCTTAAATTTCAATAAATTAACTTCAGTTAAATATTGCAAATTATGTAAAAATCGTGTAATTTTATGCGTGATTTTAGTTATCATTACTGATTATTAAAATTACCGATAAAAATAGATAAATATGACAAAACTAAATAAAAATAAGTAGCAAGGTAGTAAAGGAAAAAAAATGGTAAAACATTTAGACAAAATCATCGAACAAGCAGGGAAAGACTTGCTTAGCCAATTAACAAATAAAGTTAGTCACAACCGTTACACACTAACCATTGATGAACTCAGCACTCCTATATCGGTGTTAAACGTCAAAGGCGAAGATGCCTTAAACCAGCTGTGGCATTACACCATTACTTTTACCAGCGCCAATAAAACCCTATCTACCGATGCTTTTTTAAACCAACC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.20,-10.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56809-56661 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHG01000059.1 Gilliamella apicola strain Choc4-2 Gilliamella_apicola_Choc4-2_contig63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 56808 26 100.0 35 .......................... CCGGGCTTCTGGCAACTCTTTGCTAGCATCACGCC 56747 26 100.0 35 .......................... CCGCGAATCATTTAAAAATGCTAACATGAACGCGT 56686 26 96.2 0 ...................C...... | ========== ====== ====== ====== ========================== =================================== ================== 3 26 98.7 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CTATTTGAAGAAGAAAAGCAACAACAAAAAGCGCTTATTGAAGCGGGATTAGATAAACTTGGCATCACCGAGCCTTATCAGCGAGATTTTGCCATGAAAAAAGTGGACGAAGCGCACGAACATGTCAAAAGCAACTGGCAACTAGAAAAAGAAGAGCGCATTAACCCGTTATTCTGTATTAAACAATCGATAATAATTCAGAGGATAATAAACCTTGTATGATCGTAATTGTGTAAAAAACACACCATAAATAAGTAGGGCAAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAACGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : CTGAATATGTAACTTGTTCTCCTAAACTAACATTGCTAAAAAAATAGGCATTGATTCTACAGTCAAAAAACTTCGCCATAAATATGGAATCGGTACCTCAATTTTTCTATAAATGGCGAGAAAATACAGTGAAATGAAAACATCAGAAATCAAACTTTTAAAAGAGTAAGAAACAAAATCGAAAGTTTAATATGTTTATATTTTTCAGCTGATTATTGATATGTAAACTATTGACATAGTGACGAAACTGTATTTCCAAGGCAATTAAGTATATAATACCTTGCAAATTCAATTAATGATTATTACTAAACTTATACTTTTATGAAATCTTCAATTATCAGTAAGTTAGAAGCTCTACAAGAGCGTTATGAAGAGGTTCAAGCATTATTGTCTGACGCATCAGTTATCGCCGATCAAAATCGTTTTCGTTCTCTTTCTAAAGAATATTCACAATTAACCGATGTCGTTAAATGTTTTACTGACTGGAAACGGACGCAAGA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1305-1636 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHG01000070.1 Gilliamella apicola strain Choc4-2 Gilliamella_apicola_Choc4-2_contig73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 1305 26 100.0 36 .......................... CCGCGGTTGAGCGTTGGAGCAAACAGCGAATAGGTC 1367 26 100.0 35 .......................... CCGCTGAATATGAAGCTGCGGAATATATATTGAGG 1428 26 100.0 35 .......................... CCGACGTTGTGCCAATTGTTGATGATATTGTCATG 1489 26 100.0 35 .......................... CCGTAGAGGGGTTCGAAAAAAACGGGCAGGGCACT 1550 26 100.0 35 .......................... CCGGGAACTGGCACAAGAGATAAATTTACATGCCC 1611 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 6 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AATAATCAATAATGATAACTAAAATCAGGCATAAAATTACACGATTTTTACACAATTTGCAATATTTAACTGAAGTTAATTTATTGAAATTTAAGATAAGCTTAGTGAGTCATGTTTTTTTAGGTTGCTGCTTTTAAGCCCCACTTAAAATTTTATCAATTAAGTGGGGTTAGGGTTTTCGCATTAAGATAGAGGGAATATCTTTTCGTAATCAGGAGTAAACCACCAATAAAAAAGGGAATTAATCTAAAACAGTTATGATAAATCTTGTACCAATACGAAAACAAAAGGTGATGTTTTTTATTTAGGCTCAATCAAATACTGCATCTTATTGAATTTAAAATAAAAAAATTTTTTTATTGGTAGAACGGTAGAAATTAAAACAAGCCTACTTATGACTTTTTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTATCGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : ATTACCCTAGAATCTTTCACATTCGCTTCAATTTTACAAAAAAGCGGAATATTGCTATACTTATCTAATTAATTTCCACGAAAAGGAATTGTTTTGTCGATATTCATTTAAAATTTAACTTACCGACATAACAACAGTTTTTGCTTTTTTATTATCCTCTATTTTTTATCTTTGCTTGATTTTTCGTCAAATTTAATTAATTGAAACACATAGTTAATATGTAATTTAAAACGTATTTATTCTGTATTAATAAGTAACCGATTTATTTTGTTGAATTATTCCTTTTCTTTTATTTGCATAAAAAAAGGCGGTATTTTATGAATAAAACAATAGACTCTAAAAATAAACCCTTAAGTATAAATGATATTACCATTATTGATGATAGTAAGTTAAAAAAAGCGATAACCGCAGCAGCACTCGGGAACGCTATGGAATGGTTCGATTTTGGGGTTTATGGTTTTTTAGCTTATGTTTTAGGGCAAGTGTTTTTTCCTGATGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19896-19504 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHG01000070.1 Gilliamella apicola strain Choc4-2 Gilliamella_apicola_Choc4-2_contig73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 19895 26 100.0 35 .......................... CCGGTGATATGCACAACTTGCAACCAGCAATCGGT 19834 26 100.0 35 .......................... CCGAACTATACATTGCAACGGCATCATCAATGCGT 19773 26 100.0 35 .......................... CCGGCGTGGGTGCCAGTATTGAAGCGAGCAGGAGT 19712 26 100.0 35 .......................... CCGTATGCCTCATCAGGAGCTAGCCAATTGACTGT 19651 26 100.0 35 .......................... CCGCACCCAATCAGGGGAATTAGATAGTGATAGTA 19590 26 100.0 35 .......................... CCGCAGATGCATTTGAACCGCCCTATCTTTATCAA 19529 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 7 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AACTTAACAGGCTATGCTGGAGGCATTGATAAAAAAATTAAGCTACTACAAATTGAAGGCATTGATACTCAAAAATTTTATCGCCCAACTAAAGGAACAGCACTTTAAAACAAAAATATAATTCAGCAAACTATAAAGAGAAACAGTAAATATCTACTTTAGAATATTTTAGCTTTAATTGAATAATAAATATTAAATGATCGCCAGATCGGATTAATTAATATTTTTAGCATTTATACCGTTAAAATTAAAAAGTTTCTTAATTTTCAAATTGAAACAAATATTTTGATTAAAATTTTTTATTTAGATACAATAAAATTTAAATATCCTATTGAATTTAAATTAAAAATTGGTGATTTTTGGTAGAATAGCATAAATTGAATTGAGCTTGTTTTTTATTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTCAAAAAATCTGGTAGAATTTATCACCTACTATAACTGCAAATAAAACAGATAGATACGATTAGA # Right flank : CCGGCTTTGCACAGCTTTCCAATACCATTGTCAGCAAATGGTTAAGGTGCTAGCTTCTTTGTTGATTGGTTATATTAATTAAATATCACACAATGCGCTGACAACTAAAGTTAACCTGTCAAATACGAACATTTGATAATGTTCATGCCTTGTTTAGGAAAATCACAAATGATTCGAAAAACTGGACGAGCATAGAAGAGGCAATTCCCATGCGACCACTTTGTTTCTAGCATCTGCATCGAGATTGTAAAGAAGGTTCGCCAAACTCTCTGCTCAGACATTACCAAAAAATTAATTGTATTTCGCAAAAGATAAAAACGCCTCAAATCCTAACTGTACTGAAAAATTTAAAGCTTACAGCACCAAATGGTTGCCATTTTAAAACAACGCTAACTAATGCCGTTTAGAGTTTATTTCTGTATATAGAGAACACGTTAATATGGTTATGAATAAAAAAGGATGCTCCTTGATCAATAAATTAATTATTTTCTATGATTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //