Array 1 180737-181802 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTLU01000003.1 Escherichia coli strain 10432wE11 NODE_3_length_303098_cov_27.9681, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180737 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 180798 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 180859 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 180920 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 180981 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 181042 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 181103 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 181164 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 181225 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 181286 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 181347 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 181408 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 181469 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 181530 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 181591 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 181652 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 181713 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 181774 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 207503-208020 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTLU01000003.1 Escherichia coli strain 10432wE11 NODE_3_length_303098_cov_27.9681, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 207503 29 100.0 32 ............................. ACGTTGGTGATTTCGCTGTCGGGATCGGCATG 207564 29 100.0 33 ............................. GTCGCTGGCTAATCCATTTGTCGAGGCGCAAAA 207626 29 100.0 32 ............................. ACCTCCTCGTAATCCTGTCCCTGCAGAGCCAG 207687 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 207748 29 93.1 32 .A........A.................. CGATACTTCCGGATATCCGCAGTGATGTGGAT 207809 29 96.6 32 .A........................... GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 207870 29 96.6 32 .A........................... TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 207931 29 96.6 32 .A........................... GACGCACTGGATGCGATGATGGATATCACTTG 207992 28 75.9 0 .A.........C..T....A..-.C...C | T [208011] ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //