Array 1 154185-151961 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069940.1 Klebsiella pneumoniae strain FDAARGOS_1312 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 154184 28 100.0 33 ............................ CAGGGTTCAATCGGTATTTGCGCACTCTAACAG 154123 28 100.0 33 ............................ TACACATGGATTGCGCGTAACATGGCATGGGAC 154062 28 100.0 33 ............................ CCACTCTATGAGGATTTAAAATGACAGTACAAG 154001 28 100.0 33 ............................ CGAGTCAGAGGACACCCAGATAGAGACAGCGAC 153940 28 100.0 33 ............................ CTGCGAACAGCAACGACAGGGCTGCTGCACCAG 153879 28 100.0 33 ............................ TATGGCTAAAGCCATGAACCCCAAGACGATAGT 153818 28 100.0 33 ............................ TCACCCGTGAGGAAGCAGAAGACCTGACCATGA 153757 28 100.0 33 ............................ TAATCGCAGAGAGATGGGGTGGATAGTGGAGGA 153696 28 100.0 33 ............................ TCATGTCGAGCGCTTCCTTCTGGCTCGCCGTCA 153635 28 100.0 33 ............................ TGCTGGTACGGTAGAGCTGGACGCAGTGTTTTT 153574 28 100.0 33 ............................ TGAAATTGTGGCAACTAGAAGCCGGTGTATCGG 153513 28 100.0 33 ............................ TGACCAGAGGATAACTGGTGGCGCTACTGCATT 153452 28 100.0 33 ............................ TGATGACGGGCTGCTTGAGTGCCCGTTTTGCGG 153391 28 100.0 33 ............................ TTCCGCTGGCGATTACTTCATATTTAGCCATGA 153330 28 100.0 33 ............................ CACCCGTCCAGAAAATGGATGCGATTATCAAGG 153269 28 100.0 33 ............................ TAAATGCAACGAATGGTTTACAATGGATATTGA 153208 28 100.0 33 ............................ CCTCTCCGTCAGCCGGAGTTGTGTTTATTTCGT 153147 28 100.0 33 ............................ TTCGCCGGGATTTCTCGGGCCGAAGCAAGGTGT 153086 28 100.0 33 ............................ CGGCTTTTGATGCTTTGTCTACTGATTGTTGTG 153025 28 100.0 33 ............................ TATCCACCAAGCCAAAGATTGTGGCTCGATGAA 152964 28 100.0 33 ............................ TGCGCAGGCTGATGCGCAGTGGGACGTGGCTGA 152903 28 100.0 33 ............................ TCATTCAGGTCGTTAGACGGGACTGGCTTGTTA 152842 28 100.0 33 ............................ TCCTTCTGATAGTTTGTTTCAACGGCAAACATT 152781 28 100.0 33 ............................ TCAAACTCAACAGGGGGAGCTACAGGCTTTGGA 152720 28 100.0 33 ............................ TCTCATGAAGGGCTGGCGCTTGCAGTCTACCCC 152659 28 100.0 33 ............................ TGATACTGATGAGTCTGAAATTTACATCACATT 152598 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 152537 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 152476 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 152415 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 152354 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 152293 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 152232 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 152171 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 152110 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 152049 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 151988 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 37 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163393-162938 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069940.1 Klebsiella pneumoniae strain FDAARGOS_1312 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 163392 28 100.0 33 ............................ TGTTTTGTTTGATCCGCTATTTGAGGTATTGCT 163331 28 100.0 33 ............................ CAAGATAAGCCAGAGGATCGGCACACTTAGGAG 163270 28 100.0 33 ............................ TGTGGATTAATGGGGATTTTGTCGAGAAGTGCG 163209 28 100.0 33 ............................ CAAAGCAGGTTGTATTTAACCAACGCATCATCG 163148 28 100.0 33 ............................ CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 163087 28 96.4 33 .............G.............. TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 163026 28 96.4 33 .............G.............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 162965 28 85.7 0 ............TG.....A.......T | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 33 GTCTTCCCCACACACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //