Array 1 497-1076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXK010000021.1 Nocardiopsis sp. B62 B62_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 497 30 96.7 31 .............................T CGGGATCATGGGCCAGATCCGGGCCGTCGAA 558 30 96.7 31 .............................G CGAAGGCTGCCGAGAACGCCCAGCTCGTCAC 619 30 96.7 32 .............................G ACTTCCTGCACAAGCTCGAAAACCATCGCCGC 681 30 96.7 31 .............................A GGAAGCCGTTGCCCCAGAACGACGAGGCGGC 742 30 100.0 31 .............................. AGGCAGAGTTTTCGGTGTGGGGCAACGTCGC 803 30 96.7 31 .............................T CGTCCATGAAGTCGGTGTCGCCGACGGCCGG 864 30 100.0 31 .............................. GGTTGGTCACGCTGGTGACAGAGCCCCGCCG 925 30 100.0 31 .............................. GGTTGGTCACGCTGGTGACAGAGCCCCGCCG 986 30 100.0 31 .............................. GAACGTCGGTACGGGGCCACTACCGTCCTCC 1047 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ================================ ================== 10 30 98.0 31 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : ACCGCCAGAAGGGAGTCCGACCCATGAACACCACCCCACCCCCCACCGCACAGGCACCCGTTCCCACCGCCGAGACCGGGTCGGCCTCCACCCCCACCCACCAGGCGAAGGCCACCCACCCCCACGCACCGGCCGCCCTCGCCGCCGTGGTTTCGATGGCACGCGTGACCAGCCGCGACACGCAACCCGCTCCCCACAGGCCGGAAGGCCTACCCTCCTTCGCTGCCGCTTTTGCGCCCACCACCCCAGCCACCACGACACGCGAAACGATGAACACCAGCCCTGGCCCCGCACCCTCCTTTGCTGCCGCTCTTTCGTCGGGAAGTGTGACCAGCCGCGACACGCATCCTGTTCAGCGCAGGCGTGGAGGAACACATCTCTCCCGCTATAGGCTCGCCCGTGACAGCAACAACGAAGGCGGATGCCGGTTTTGTCTGTTTCTCAACAAGTTGGAAAAACGAGCACTTGCCACCGGTAAGTTCGCAGGTGAAAAAGTC # Right flank : GGCGGCCATGACTCCGGCCCAGGCGGCGAGAGCCTGCTCCCCGCAGTCACGCGGGGCCCTCCTATTACTGAGCGACGGCTGCGCGGGCTCGGCGACGGACGAAGACCACCAGCACACAGGTGGAGAGGAAGGTGGCGACGGCCATCGGGGTGAATGCCCATTGGTAGGAGGTCGGATCCTCTGGCAGGGCCTGGAGGAGGGCTCCGGCCGCCACTGTGCAGATCACGGCTGTGGTGAAGCCGCTCATGTTGACCAGACCGGAGGCGACACCGGTCCGGCTGGCCGGGATGCCGTCGCGGGCGAAGTCGAAGGAGACCGTGGGTGCCATGGTCTGCCCGAGGGCGCTGACCGCCAGCACCGCCACACCCACGGCCACGGGGGCGCCGCCGGGCCAGGCCACCAGGAGCAGCCAGCCCAGGCTCAGGATGCCGCTCAGGGTGAGGGCGAAGTACACCCGCACCCCGGGCCAGCGGCCGACGAGGAGACCCGCGACCGGGGCC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 287204-287355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXK010000001.1 Nocardiopsis sp. B62 B62_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 287204 30 100.0 31 .............................. GATTCACGTCGGGAGCAGGTGCCACGTATTC 287265 30 100.0 31 .............................. CGGGGAAGAACATCATTCGTGGCCTGATCAA 287326 30 96.7 0 ............................A. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 98.9 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CCCGACCCGGGCTCGTCCCGACCTCCTCGTTGACCTGCGGATGAAGGTCCTCAGGCTCATGTGTGCGTGTTCGGCCAGGTCAGACAGGGGGCCTGGCCGCCGTCGCGCCAGGTTCGCGCCACCCGGTTCGCGAGCTCGCTGCCCGTGGTCGGAGCGGACCAGGTGCCTGCTACCCCTTTCCGGAGAGGTGGTCGAGTGGGCCTCACCAACGCGACATCCGAGCGGTGGCGATGCTGGACGAGGACGACCACGCCGGAGTGGAAGCGATCGCCGGACTTGTGGACGAGGGAGTCCTGAAGGCGCACGTGGAGGCGACGTCCCGCTGTCCGAGGCCGCGAAGCCCACTCGCTGGGCGAGACCGGCCGGACCACGGGGAAGATCGTCCTGGTCATGGAGGACAATGAGGCGGGAGAACTGGAAAGGCTGCGCCGGATTTGTCTGTTTCTGGAGAACTTACAAAAACAGGCCCTTGCCGCCGGTAAGTTCGCACGTGAAAAAGG # Right flank : GTCGCTCACTCCAGATCCACTCCAGATGGAAGTGTTCCCCGCACGCGAGGATGGGCCGCATCAGGCCGGGGTGACCGCCTGCGGCGCAGGGGTGTCCTGATCCGGTCACGGGCGTGGGTGTCGCCCCTACGAAGACCCGGACCCACCCGAGCCCGAGCCCGCTGACGACGGGCCGAAGGAAACCCACGACGACCACTGCGACTGATCCCTGACGCAACGAGGCAAGGACACTCGCTCGAACGGAGCGCGCTCCTACCGGCCTCGGGCTGGGACCTCGGCTTTGAGGAGTATCTCCTCGTACTCGTCCTCGGGGTCGGAGTCCAGCACGATCGCCCCGCCAGCGCCCACGGTGACCCCACCGTTGGCGTGCACGGCCGTGCGGATGACGATGCTGAGGTCCGCCTCGCCGGTGTACGAGACGTAGCCCAGCGCCCCGGAGTACACACCTCTGGCTGAGGACTCCAGCCGGTCGATGAGCTCCATTGTGCGCAGCTTCGGCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 353-1113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXK010000023.1 Nocardiopsis sp. B62 B62_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 353 30 100.0 31 .............................. GGTCGTCGCCCGGTTCGCCGGGGGCCAGGGC 414 30 100.0 31 .............................. GGTCGTCGCCCGGTTCGCCGGGGGCCAGGGC 475 30 96.7 31 .............................G ACGAAACGCCCGTAGGGGGTACTGGGGGGTA 536 30 100.0 31 .............................. CGCCAGCATCGAGGCGGTGGCGCGCGATGAG 597 30 100.0 31 .............................. GCGCGCCGGTATCGGCGCCGGGCCAGGAGAC 658 30 96.7 31 .............................G GTACGCCGCCCTCCGTCCGCCCTAGGGGCCC 719 30 96.7 31 .............................G GGGCGTTCGTGGACTTCACGGCTGCGCAGTG 780 30 96.7 31 .............................G CCAAGGTCGAGACGTGGCGGGCCTACATCCT 841 30 100.0 31 .............................. ACCCGCCGGACCCTTCGTCGAGGGCGTCGGC 902 30 96.7 31 .............................C GCATGATGGCCACACCGCCCCGGGACTCACA 963 30 86.7 31 T.............T..........C...G GCTACCGGTGCTCGATCGGGCTCGCGGCCCA 1024 29 80.0 30 ........T..A.G...C.....-.....C GAAGCGTGGATCGCGCGACAGCCCCAAGCA 1083 30 76.7 0 .G...........GG.T........G..GC | G [1088] ========== ====== ====== ====== ============================== =============================== ================== 13 30 94.4 31 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : CTTCCGCCGGAGCCGGTTTGGTCTCCACCCCCACCCATCCCGCGCGGCCCGCCCGCCCCCACGCACTGGCCGCCTTTGCTGCCGCTGTTTCGCTGGCAAGCGTGACCAGCCGCGACACGCGACCCGCTCCCCACAGGCCTGGGGGCCTACCCTCCTTCGCTGCCGCTCTTGCGTCGGGAAGCGTGACCAGCCGCGACACGCATTCCGGTCAGCGCAGGCGTGGAGGAACACATTGCTCTCGCTATAGGCTCGCCCGTGACAGCAACAACGAAGGCGGATGCCGGTTTTGTCTGTTTCTCAACAAGTTGGAAAAACGAGCACTTACCACCGGTAAGTTCGCAGGTCAAAAAGTC # Right flank : CAGTATCCGTCCACCGGGGTGGCGGGAGCCGCAGGGTTGCGGCTCCCGCCGGGTGGTCAGCGGTCCTCTTCTTCTTCGAAGAGGCGGATGGCCGGGGGCTCGGTGTCCGTCGGGGGGACCTTCATGGTCTTGAGGGCGAAGGACATGATGTCGTTGAACACCGGTCCTGCGGCCTCGCCGCCGTAGTAGGTCTCCTGCGGGTTGTGCAGGACCACCTGGACGATGAGTTCGGGATCGTCGGCGGGGGCGAAGCCCGCGAAGGTCGCCGTGTAGCCACCGCCGTCGTAACCGCCGGTCTCCGGATTGATCCGGTTGGCGGTACCGGTCTTGCCCGCTACCCGGTAGCCGTCGATGCGGGCCTGGGGCGCGGTTCCCTCGTCACTGGTGACCGCTTCGAGCATCAGGGCGAGCTGGTCGGCGGTCTCCTTGCTGACGACCCTGGTCTTCTCCGGCTCCTCCGCGGGGGTGAACTCCCCGTCGGTGTCGACGGTTCCCGCGAT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 191216-191502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXK010000003.1 Nocardiopsis sp. B62 B62_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 191216 30 93.3 31 ..........T..................C GGCCCGGCGCCGGACACCGGTCAGGCACCGG 191277 30 100.0 31 .............................. GCATCCGGACCGCCTCGGAGAGTTCCTCCGA 191338 30 93.3 32 A............................T CCTCCGCGACGTTGATCGCGAACCTGTCGGCG 191400 30 86.7 43 ..............T......C......GG CCGAGGCCGTCGCTCCGGCGTCATCGAACCCGTTGCGGAACCG 191473 30 70.0 0 G.....................GCACTTGG | ========== ====== ====== ====== ============================== =========================================== ================== 5 30 88.7 34 CTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : CCCCACGGAGAGCGAACCCGCCCGGCCCACTCAGGGTGCGGGGGTCGCGCTGGCGACCCGCTCCACCGGAACCGGAGCGGCGGTGGTCACGGCCCTCGCCCTCACCTGGCTGAACCCGCACGTGTACCTGGACACCGTGTTGTTCCTCGGTTCGGTCGCCAACCAGCAGGTGGGGGAGGCCCGCTGGTGGTGGGCGGGCGGTGCGGTCACCGGAAGCTTCGTGTGGTTCTTCGCCCTGGGCTTCGGTGCCCGGCTGCTCCGCCCGGTCTTCGCCAAGCCCGGGGCCTGGCGGGTGCTCGACGGGATCATCGCACTCGTCATGCTCACCCTGGGTCTGCGCCTTGCCCTGGGCGGCTGACCCGAAGATCGGTAGCCTGCTCTGGTGAGGGGGAGAGAGGCCCCTGTGCGGGCCCCCTTTGGGGTGTTTGTCGCCGGAGTCTGTTTCGCGAAAAGTTGCAGATTTCGCTGGTTCCGCGCTCTGGAACCGCAGGTCAACGAGT # Right flank : GGGCGGTTACGAAGCGACTGCTCGCGTGGGGTTGGGCTTTGAGTGCAGCTTCCACAGGCCCAGGGTGGTCAGGCCCATCACGACCATGGGCACCACGAGCACCGGTCCGGTCACCACTGACACGTCGTCGAGGCGGTCGGCGAGGATCATCGACACCATCAGCACGGTGTTGTTGACGGCATGGACCAGGACGGCCGCTTCCAGGCCGCCGGTGCGCTGTGTCATCAGGGCGAAGCACACCCCGGAGAAGACGTAGGAGGTCAGGGCCCAGGGGTCCAGAGAACCGTGGATCGCACCGAAGGCCAGAGAAGTGACCACCGTGGACACAGCCAGGGAGACCCCAGGGCGTCGGAAGCGTGCCCCCACCGCTCGGAAGAGCAGCCCCCGGAAGAGGTACTCCTCCCCGGCTGACTGGAGGGGGACGACGACGATCGCGACGAGTGCGAGGGCGATGGTCGCCGTCGTGAGCTGGAGTGACCCGAACGGCATGATCAGGTGCA # Questionable array : NO Score: 3.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4397-4793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXK010000040.1 Nocardiopsis sp. B62 B62_contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4397 30 96.7 31 .............................G CGGCCAACGTGCTCCAGAACGAGGGCCTGGA 4458 30 96.7 32 .............................C TCAGTCTCGATCTTCCCCTGGAAGCCCTCAAA 4520 30 100.0 31 .............................. CCTGCTCGCCCAAGATGGCCTTCGGCACCCA 4581 30 100.0 31 .............................. TCTGAGTCTCGGCCTCTGGAAGACCTAAGGC 4642 30 93.3 31 ............................GG CTCCCGCGATGTAACCGGGGCCTGCGTCATA 4703 30 100.0 31 .............................. TCCACCGCCAGGACCTGTACCCGCTGGAGGA 4764 30 96.7 0 .........................G.... | ========== ====== ====== ====== ============================== ================================ ================== 7 30 97.6 31 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : ATGAACACCACCCCACCCTCCACCGCACAAGCACCCGTTCCCACCGCCGACACCGGGTTGGCCCCCACTTCCGCCGGAGCCGGTTTGGTCTCCACCCCCACCCATCCCGCGCGGCCCGCCCGCCCCCACGCACTGGCCGCCTTTGCTGCCGCTGTTTCGCTGGCAAGCGTGACCAGCCGCGACACGCGACCCGCGCCCCACAGGCCTGGGGGCCTACCCTCCTTCGCTGCCGCTTGTGCGCCCACCACCCCAGCCACCACGACACGCGAAACGATGAACACCAGCCCTGGCCCCGCACCCTCCTTCGCTGCCGCTCTTTCGTCGGGAAGCGTGACCAGCCGCGACACGCATCCCGGTCAGCGCAGGCGAGGAGGAACCCATCGCTCCCGCTATAGGCTCGCCCGTGACAGCAACAACGAAGGCGGATGCCGGTTTTGTCTGTTTCTCAACAAGTTGGAAAAACGAGCACTTACCACCGGTAAGTCCGCAGGTCAAAAAGC # Right flank : AAGGAGGCCACCATGGCGCCGCAAGTGGCTGGAGTGCTTCCGTGCGAGTTTCAAAACTGCCCGAAGCAGAGACAAACGATCCGCGCACGCGGAATAGTGAGTTGGCTAGGGGAATGACGCGAGTGCTCGGGAGAGGGCCTTTTCGCCTGCGGGCTTCCAGGTGGGCTTGCCACCTGGGAGGCCCTGTTCGCCGGCACGGCCGATCTCGATGAGGCCGAGGCTCCGAAGTACGGCCCAGCCTCGGGAGCGTTGGACGGTGGCCTCGTCGGTGGGATACCTGGCGAAGAACTCCGTGGCGTTGGGGAGCAGGACCCATGCGGCGCAGAGGTCCGTGGTGGGATCGCCTGAGCAGAGTTCGCCGAGGTCCACGACACCTGTGAGGGCTCCGTTGGTGGTGACGACGTTGGCCGGGTGCAGGTCCGCGTGCAGCCACACCGGGGGGCCATGCCACTGGGGTGCGTCAACTGCGGCCTGCCAGACCTTCAGGATCCGGGGAATCT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26216-25272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXK010000004.1 Nocardiopsis sp. B62 B62_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26215 29 100.0 32 ............................. CCGAGGAGGTCAGCGCGGAGGGCATACCTCCG 26154 29 100.0 32 ............................. CGGGCCAGAAGTACCCCCCGCGCACCGAGGGC 26093 29 100.0 32 ............................. TTCAGCCCCAGCTGACCGCTGTCGTCGTCCAT 26032 29 100.0 32 ............................. TTCAGCCCCAGCTGACCGCTGTCGTCGTCCAT 25971 29 100.0 32 ............................. GTGGGCATGGACTTCACGTTCGTCCGCCAGAA 25910 29 100.0 32 ............................. TCGTAGTCGGCGTCGACGACCTGTTCCATGCC 25849 29 100.0 32 ............................. ATCGTCTGCCGACCCGCACAGATGGTCTCGCT 25788 29 100.0 32 ............................. ATCACCCTGCAAACCGTGGGGGGTGAGCGGAC 25727 29 100.0 32 ............................. GCGAAGCGGTCCCCACCTGGTCCGGCGGGGAA 25666 29 100.0 32 ............................. GAGGGCCACGTCGTGGGCAGGGACGCGTACTG 25605 29 96.6 32 ...................T......... TCACCGGACGCTTTGGGATGGTCCGCCCGAGC 25544 29 100.0 32 ............................. ACGGTCTGCGGGATAACCGGATAGATCGCTCG 25483 29 100.0 32 ............................. ATTGACGCGGCCGTGACTTTGGTCATTGCTCG 25422 29 100.0 32 ............................. GCGGTGAGGCGGTAGAGCCGCTCGCGGAGCAT 25361 29 100.0 32 ............................. CCCGGCCGAAACCGGCCGGGCCCTCCTGCATC 25300 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CGACCGGGCTTCCAAGGGACTGGGGATGCGCCTGGTCGAGGCCCGCGACGGGTACGCGGTGGTGGAGATGGTCGTGGGGCCGCTGATGCTCAACGGCTACGACATCACCCACGGCGGGTTCGTGTTCGCGCTCGCCGACACCGCCTTCGCCTGCGCGTGCAACCTGGACGGCGGCGACGTCACGGTGGCTTCGGGCGCGGACGTGACCTTCGTGGCCCCCACCAAGGAGGGGGATCTGCTGGTGGCGACCGCCGAGGAGAGGGTTCGGTTCGGGCGCAGCGGCGTCTACGACGTCACGGTCCGTCGGGGTGACCAGGTTGTCGCGGAGTTCCGGGGTCGAAGCCGGAGTCTTCCCCAGAGGAGTTGATGGTGTGGGGGCCGGGGTTTGGGGCTGGGGACTGAGGGTCCCAGGGCCCCGGCCTCTGACATCATGTGCATTAGATGTGTGGCTGTGAAGGTCAAGCGGAGATAACGGCCCGCGTTGTCGCAGGTCATTAAGC # Right flank : ACCACCCCCATGACCCAGCAGGCCGCCGCGTGGTGAGGGTGGCGTTACAGCACTGGCTTGTCTCGGTCCGCCTTCAGATCCGACTTGGTAGGACTCGCTGCATATCGCGCCCAGAGCGCCCAGAGCGGCACGGAAGCAGTCAGCGGGATCAGCGCCATCACCATGGACCGGGCCCGCGCGTTCATGCATATCTCATCCTGGACCAAGGCCACCCCCTCTCGGTACGTGTAGAGGTTCGTGGATGGGCAATCAGGGCGAGGCGTTTCCAGCACGATGGCGGGTTGAGGGGGTGGGGCCAGCAGCATCCAAATGGTGATGAACCACAAGAGCAGCGCCCATATGAGGACAAAATTGTGAAACTTCAAGACGGTCCTGTCGTTGGAAGACGGGCCACCGAAGAATTTCATTCCTGTATTTCCATGTCATCCCTTTGGCCCGATCTGGTCAGTCAGGTTTTGAAGAAAGGTTCACCCCCATGACCCCCAACAGGTCGCCGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 73043-73420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXK010000005.1 Nocardiopsis sp. B62 B62_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 73043 30 100.0 31 .............................. ACCAGCCCCCCAGGTACGCCCGCCGTCCACC 73104 30 100.0 13 .............................. GGTCTCGGGTCAA Deletion [73147] 73147 30 93.3 31 AC............................ GGTCTCGGGTCAAACTGGCGTACTCGGTGGC 73208 30 96.7 31 .............................A GCATCATCCCCGACCTGGTCAACGGCGTGAT 73269 30 90.0 31 ............TG...............A CCGCGTGGATGTTCTCCAACATGGCCCCGGC 73330 30 90.0 31 ............TG...............A GGGTCACCCTGCGGCCGCGCCGGGAGGCCTG 73391 30 93.3 0 ....C....................G.... | ========== ====== ====== ====== ============================== =============================== ================== 7 30 94.8 28 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CCTGCGCACCTACACCAACGACGCGTCCGAGGTGACCGCCGAGGGCGGCACCCTGGCAGAGGTCCTGGACCACCTGGAGGCCAACCACCCGGGCATCCTCGCCCGCGTGCTCGACGACGGCGGCAAGGTCCGCCGCTTCGTCAACGTCTACGTCGGCGACGAGGACGTCCGCTTCGAGAAGGGCCTACAGACCGAGGTCCGGGACGGCCAGCAGATCTCGATCATCCCCGCCGTCGCCGGGGGCTGCTGACGCACGGGCAGTGGCGAACCACGGGGCGGGCGCCGGTCGGTGCCCGCCCCGCCGCGTGCCCGGACCCTCGTAACCTGGGAGGGAGATTCTCCAGGGGACGAGGGTGGCGATGTCGGCGACGCGGTTGTTGGTGCGGAGAGAGAAGAGATGAATCACGTGGGTCCTTTGGGGTCTCTTGTCTTCGGTGTCCAACTTCTGAGAAGTTGGAAAAACAACCCCTTGCCGCTGGTAAGTTTCCTGTTCAAATAGT # Right flank : GCTTGCGCGCCAACGTTCAACCAGATGGTGGGCGGGCCCTTGGTTACCGGGCTGGCGGGACCTGGCCACCCGGTTCCACCAGGGGTTCGTCCGTTGTTCGCCGAGCGCTCAAACCGCCCTGTGGAGGGAAGTCCGCGCTGTTCAGGGCTGTTTCCGAAGCTGGGGAAATCGTGACCACATCGTTTGCACTCTCCATGGCCGAGTGCTAAAAAAGGGAGTGGTTAGCACTCACCTATACCGAGTGCTAACCGGATCGAGGCTGCGAGATCGTGGTCCTCCGGCAGCAGGGTTGCCGGTGCGAACGCGGTCGTCCGTCGCGGGCGCACGCCTCGTCCCATCGCGTATCAGCCCGGTCACGGGAGGACAAGAACTCAATGGCAGCCAAACTGATCGCGTTCGACGAGGAGGCCCGTCGCGGCCTCGAGCGCGGCATGAACCAGCTCGCTGACGCCGTGAAGGTCACGCTCGGCCCGAAGGGTCGCAACGTCGTCCTGGAGAAG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.29, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : CTGCTCCCCGCGTGCGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7276-7485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXK010000006.1 Nocardiopsis sp. B62 B62_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7276 29 100.0 32 ............................. TACCCGGAGATCCCGAACGGCAGCAACCGCAA 7337 29 100.0 32 ............................. GGATTCCGTTCCCCCGCCGCACCCCCGAGGAT 7398 29 100.0 32 ............................. TGTGCTGTGCATGCACCGCGCATTACCCTCGT 7459 27 86.2 0 ....................--C..G... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 GTAGGCCCCGCGCACGCGGGGATGGACCG # Left flank : AACGCGCCCCACACAGGTGCTGGGGGTGATCGCGGGGTCGGTGCTTCGGCGCGGATCGTCTCCCACCACGGCCGTGGCACGGGCGGGTTCACCCAACCAGAGGGGTCGGTGTTGCCCATGGTCTGGGTGGGAACCACGAGGTTCCCCGCGGGCCCAGCGCGTCCAGCAGCGCCTGGACCACGGCCTGGTCTGCCCCGCACGCCCACCCGAGGGAGCGCAGTGAGGTGTGGACCAGGAGTGTGTTACCAGGGCGCACTCCCAGGCGCGCCAGGTGCAGGGTGAGTGAGGCCGCCGTACGCGGCCCGCCCGAGAGGTAAGGGGGAGTGAACACGGGCGCTCCGGTGCTGGTGGACGCTTCGGGTCACTTTCCCAGGGCGAAGGTCCGCGAGGCCATTCAGTTTCGCTCTCGGGCCCTCTCTGCCATGATGCGACTCCCGGAACGCCTGCCGACGCGATTATCAAGCGGAGATAACGGCTCGCGTTCCCGCAGGTCGCGAAGT # Right flank : GGGGCAAGGGGCTTTGCCCCCATCCGCCTCGACGAACCCCGTACGCGGGAGCTGGCGGAACCTGGCTAGTCCAGGACTCGCATGACCAGGCCGGTGCGGGGCTTGGGGCCGAAGGACGTGGACTTGCGGGGAGTGAGTTCGCCCCGGTCGGCGACGGCGTAGACCTGCTCCACGTGCAGCGGGGGCACGATCACCGCCGTGCCCTTCTCGTCGCGGGCGGCGGCCTCGGCCTCGGCCGGGTCGTCATGGACCATTCGCACGTGTTCCTCGGGGAAGTGCCACAGGGGCAGGAGCACCTCGTGCAGGGCGGCTGTGGCCAGGTGGCGCCAGTCGGGGGAGCGGTCGGGCATGGCGCGTTGGAGCACGGCCTCGTCGAATCCGCTCACCAGGTGGGCGTCGCCCTCAGCTGACACCAGGAGCAGGGCCGGGGCCTGCGCGTCCTCCAGGAGCGCGGGGTCTGCTTCGGTGACCGGCTCCACCCGGGCCACGGTTCCGGCGGC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 130829-131650 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXK010000006.1 Nocardiopsis sp. B62 B62_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 130829 29 100.0 32 ............................. CAGGACCACACCGGCCTTACACCAGGAGAACC 130890 29 100.0 32 ............................. TCGTCGAGGCCCTGGAGCTGCTCCGCTCACAG 130951 29 100.0 32 ............................. ACGCCCTGTACGGGCGTCGGGAGTCGTTGATC 131012 29 100.0 32 ............................. ACCGCCCGCACCCAGCTGCTCGCCCTCGCCGC 131073 29 100.0 32 ............................. CTTGGTGCCCGCCCCGAGGGCGCTGTGCTGAA 131134 29 100.0 32 ............................. GTCCAGGCGGGCGAGCTCGTCGACGCGGGCAT 131195 29 100.0 32 ............................. ACCGGTGAGGCGAAGCTTCGCCAGCTCATAGG 131256 29 100.0 32 ............................. CAGGCGGAGCGGGACCGTGCCCGCCGTGCCCG 131317 29 100.0 32 ............................. ACCGACACGTTCACCACCCGAGCATGGGTCCC 131378 29 100.0 32 ............................. GACCCCTTGGGGGTCGAAGCAGGGAGAAAGTG 131439 29 100.0 32 ............................. AAGGGCGACAAGGGCGAGGCCGTCAAGGCCCT 131500 29 100.0 32 ............................. GTCGGCAAGCCGGGTGTCCCGCTCGTCTTGGA 131561 29 100.0 32 ............................. GCGACCGCGCGGTCGCGCCACCAGTCCCGGTC 131622 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : ACATGACGGTTCTGGCCCTGGAGGGGTCGTTCGCGTCGGTGCTGGGCGGCGCTCCGGCCGCTGCTGTGGTGTTCGCCGGTGAGGTGAACAAGCGCACCGCGACGGACCCGCGAGTGACCGAGCTGCAGACCCGGGTGTCGGAGGCCGGTGCCGCCGAACGCGCCGAGCTCAACGCGGAGCTCTCCGAGGTGCAGGCCTCGGTCCGAGCCGAGAAGCTGAGCGAGGTCGCCACGGAGTTCGACGGCGTGCACAGCATCCAGCGCGCGGTCGAGGTGGGTTCGGTCGACGCCATCATCCGCGCCGCCGAGCTGCGCCCGAGCATCATCGACGCCATCGCCAAGGGCATGAAGCGCTAGACGGTACGGAAACGGCCAGCCCCGTTCTGGGGGCTGGCCGTTTCCGTGTGTTCGTGTGGAATGATGTCCGCCAAGCGTCCGCAGAAACGAGTCAGGCGATTATCAAGCGGAGATAACGGCCCGCATCGCCGCAGGTCATTAAGC # Right flank : GTGCTCGGTGTAGAAGAGTTCGGGGGCGTGTCATCGCCTCGAAAACGCGGGTCCGTCAGGCGGGTGCCCCCACCACCCGAACCGGTGGCGGGGGCTGGTGCCTACTTCGTGTCCTCACCGGCGGGGAGCGGCAGCGGGAGCGCCGGTGGGCCGACCGGCAATTCCCCCTCCAACGCCCTCCAGGCCGCCGCCCACCGCTGGAAGTCGGCGGACGTTCCCTCAAGAGCGACGACGAAGGCGTTGAGCAGGGCGAACGTGGGGAGCCTGTCGGATCGGAGCGCCTCGCAGAAGCGGGACGAGGACCTCACACCCACCCGGTCCGCCATCACCCTGAAGGACGGCGATCCGGCCCAGCGCCGGTACTTGTTCATCAGTTCGATGAACTCGGGGACGCTCGTGGCCTGCACCGGGTCCGGCTTCATTCCGGCACCGGGCAGATCCTCGGGAACCTCGGGTACGAATCGCGCCTGCACGAAACTCCGCTCAGTCGGGGACCAGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 38652-38925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXK010000009.1 Nocardiopsis sp. B62 B62_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38652 29 100.0 32 ............................. TGACTGGTTTACATCAACGTCCAAAAGAGACG 38713 29 100.0 32 ............................. CTGACCCGCATCGAAAACAACGAGTGGCTCCG 38774 29 100.0 33 ............................. CTCGCCGAACGTACGCACCCGGCGTCGACTGGC 38836 29 100.0 32 ............................. ATGTCCGGGGTCGCAGCCCACACCATGCTCAC 38897 29 96.6 0 ..C.......................... | ========== ====== ====== ====== ============================= ================================= ================== 5 29 99.3 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CCTGCCGCAACTTCTGGACCTGTTCCAGCGTCCGGCCAGTCTCGTCCTCGGAGTGGGCGGAACCCTGCTGCTGACCGTGGCCTTCGTGCTGTGCCTGCACTTCTCGGTCCTGGCCTTCGCCGGGCCCGGACTGGAGGTGAGTCTGGTCGCGGTGGCCGTGGTCTTCCTCGCTGGAAACGCCATCGGTTCGGCCGCCCCCACTCCGGGCGGCCTCGGCGCGGTCGAGGCCGCGCTGATCGGCGGGCTCACCACGCTCACCGCGATGCCCGCCGACGTGGCCCTGCCCGCCGTCCTGCTGTTCCGGGTGCTCACCTTCTGGTTCCCGGTCCTCCCCGGCTGGGCGGCCTTCAGCTACCTCCAACGACGCGAAGCCATCTGAGCCTCCAAGGACCGGTGGAACGGGTTGGGTCGCCTCGATGTCTGCCAGGATGTGTGCCAGAGGACGCCGGTGCAATGATCAAGCGGAGATAACGGCCCCGCGTTCTTGCAGGTCGTTAAGT # Right flank : GCGGCCTTCGGGAGGGCAGCGGGAAAGGCCTGGAGCGTATCCAGCAGCACCTGAGGTGAAGAAAACTGCCCCGTGTCAACTCAGCACGGGGCCACACAAAATCCCTCTGGGCACAGAGAAATCCACAACGTGAAGTCTGCGCATTCAGCGCTGGTTGTCGCGCCACCCCCTGCACGGCCTGCCATCGTGGACATGCTTCGCCGGGCGAAACGTGGAGGTCTGGGGAACCCACTTATCGCAGGCCAGGCAGCGCATTTTTCCTCCTCGCCGTTTCTTGGACTCGCTGATGGTCCGGTAGTTCGGCACCGCTCCTTGGTCGGAGGATCCTCGGCATTCCAACAGTGCGTAGGAGAGCAGTGCCCAGGCGCTCGTCTCGTTGATGTAGTGCTTCTTGCGGCGGCCGTCGGCCCGCGTGCCTATCCGGCGCTCGCAGTACGGACACACTCCGGGGGTGGTCATCCATGCCTCCCTGTCAGCGGTTGAGAGCGGCTGCCAGGATC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 18120-18576 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXK010000015.1 Nocardiopsis sp. B62 B62_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 18120 30 96.7 31 .............................G ACCGAGGGCAGGACGCTTCCCGGCTGGTCCT 18181 30 96.7 31 .............................A CGAATAACTTTTCGGCAGACGGGCGTTCTCG 18242 30 96.7 31 .............................A TTGTCCATCGCATCGCGAACTCTCCTGATCT 18303 30 100.0 31 .............................. TCGGTGCGGACGGCGGTCGGCCGGTGCTCGA 18364 30 96.7 31 .............................G CCGAGGGGGCCGCACGCCTCCGGCGGCTCCG 18425 30 100.0 31 .............................. GGGGTCGGGCCACGGGCCCTCTCGAATTGGT 18486 30 93.3 31 ..A...........T............... ACGTCAGCAAGGTCACGGGGGAGCTGGAGCA 18547 30 93.3 0 ..............T..............A | ========== ====== ====== ====== ============================== =============================== ================== 8 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : TTCGAGATCTCCGAGGAGATGATCGCGCTCGCCCGTCAGAACGTTCCCGAGGCGACGTTCCGCCGGGCAGACATCGTCGACCTGGACCCGGTGGAGTGCTCGTACGACGCCATCGTGGCGTTCTTCTCGCTGCTCTGCCTGCCCAAGGGGCGCATCCCGCAGGCCCTGGGCCGCGTGCGCGCCTCGCTGGTCCCCGGCGGCCTGGTGTGCCTGTCGATGGTCGAGGCCGACCTGGACGACCAGCCCATCTCCTTCCTGGGGAACGAGATCCGGGTGTCCGGCTACCCCCGCGACGAACTGAGAGAGGTCGTGGAGCGGGCCGGGCTCATCATCGAGGACGAGCGCGTGGTCACCTACTCCCCCGACGGCGCCCACCCCGAGGTCCAGATCTTCCTCACCTGCCGCCGAGGCGCGTAGCCGTAGGGAAGGTGGAAATGTCCGTTTCTCGAGAAGTTACAAAAATGGCCACTTGCCATCGGTAAGTTTGCAGGTGAAAAAGG # Right flank : ACCGGTGTCCAGGGCGAGATGGCTGGGACTGTGTGCGCCCTGCTGGGACGGGACATGACTGAGGGGGACCACCCTCATGGTGGTCCCCCTCATTGGTCAGATGGCTAGTCCAGGCCCAGGATCGGCTCCAGGCCCAGGGTGAGGGGCTCGGGAAGCTCTGCGGTCCTGCGGATGCCGAGGAGGACTCCGGGCATGAACGAGGTGCGGTTCATCGAGTCGTGGCGGATCTTCAGGGTCTCGCCGTCGGTGCCGAACACGACTTCCTGGTGGGCGATCAGGCCCTGGATGCGCAGGGCGTGCACGCGGACGCCCTCGACGTCCGCGCCACGGGCCCCGGGGATCTCCGAGGTGGTGGCGTCGGGCATCGGCTCGGTCCCGGCCTCACGGCGGGCCTCGGCGACGAGCTCGGCGGTCCGGTAGGCGGTGCCGCTGGGAGCGTCGGCCTTGTTCGGGTGGTGCAGCTCGATGATCTCCGTGGAGTCGAAGTAGGGCGCGGCCTT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //