Array 1 10645-11995 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATQ01000033.1 Escherichia sp. E3659 sequence33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10645 28 100.0 32 ............................ TGTGTCCATAAATTCCTGATAGGCTTTCGCGT 10705 28 100.0 32 ............................ CTATTAGCGTCGAGAAATATGCTGATTTGATT 10765 28 100.0 32 ............................ GCAGCCAGTGCTGGTGCTGCGCATACATCTGA 10825 28 100.0 32 ............................ TAGTATTTTAATAAATATCAGTTAGTTGAAAT 10885 28 100.0 32 ............................ GCCTGCAACGTGACATATGAGATGGCGCGGCG 10945 28 100.0 32 ............................ GATCATGTCAGGTTTCCAGCTAGGGCATTTTT 11005 28 100.0 32 ............................ TCATCCGGGAGCGTCTCAATAAAAACATTGGG 11065 28 100.0 32 ............................ GTTATTAGTCTTATTATCGATTAGATAAAGAC 11125 28 100.0 32 ............................ GCGTTGGAGCGCCATTCACTTTCCGCGTGGAA 11185 28 100.0 32 ............................ ATCGCTTTCAGCGCATCAAGTACAGTTTCCAT 11245 28 100.0 32 ............................ GTTAGCCTGCGCGTCCCAGGTGTGCTGGCGAA 11305 28 100.0 32 ............................ AAGGGGCGTACCGCAACTGTCAGAATCAGAAT 11365 28 100.0 32 ............................ AGTTGCCCGTCTCTATTTCAACGGCGTAGGGG 11425 28 100.0 32 ............................ TCGCCGATCATCTCCGCTGAATAACGTAAATT 11485 28 100.0 33 ............................ CATACCGGAATACCTTCGGAAAGTGCTTCTGGA 11546 28 100.0 32 ............................ GACCCGCCGACAACAGTATTGAGCACGAAACG 11606 28 100.0 32 ............................ TCACTAAATCTCTGTTAGACGCCCTGTTTGAT 11666 28 100.0 32 ............................ TGCTCTGTTTGACTCTGCTTCGAATGAACGAA 11726 28 100.0 32 ............................ AGTGTCAGACCAGCGGCGCTCTCCGGATTGCT 11786 28 100.0 32 ............................ TACACGCTCAATCGACTTGGTTGCAAAACCGT 11846 28 100.0 32 ............................ GTCGCAAGGTAGCGCGTTCCCGGTGCACGTAA 11906 28 100.0 33 ............................ CAAAATTAAAGGCGGCAAGCCAACATCTGTCAT 11967 28 92.9 0 ..........C.............C... | C [11990] ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTGATTCAGGATAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGCTCGCTGGTGGATGGTGGCCAGGTGACAGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGATTGTTAGGTAAGTTGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATAGGGTGGAGGAGGTCCAGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACTCCGAACCATTAGCCACAACACGCAATAACAATTGTGATAATTGCGATAGAAATCAATTTCTCGCACAGAAATCAATGTTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACTCCATCTGACCTCAAAACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 62818-61814 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATQ01000028.1 Escherichia sp. E3659 sequence28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62817 29 100.0 32 ............................. CGATAGTTTGATAATGTGTCATGATTAAATTG 62756 29 100.0 32 ............................. ACATACTTTGCAGGCGATCGGCAGCTCTGGAA 62695 29 100.0 32 ............................. TTTCTAGCTATCGTATTCAGCGACTTAAAAGG 62634 29 100.0 32 ............................. GTATTAATCAGCACCCTGTCATGATCTTTTTT 62573 29 100.0 32 ............................. AGATGACGGGCAGGAAATCATCAAAGTCATAC 62512 29 100.0 32 ............................. GATGCGTTGTTGTATTTAGCCGCGATGGCGGT 62451 29 100.0 32 ............................. TACGTTCGAAGCTGCTCAATACTCGCCTGGGA 62390 29 100.0 32 ............................. TAGATTTTGTCCGGCTCAGGTGCGCCGATGGT 62329 29 100.0 32 ............................. AAAGAACGTTTCAGCATAGCTCGCTTTATCAA 62268 29 100.0 32 ............................. CGAATCCCAATTTTGGTGTCTCGGTTGGCGCT 62207 29 93.1 32 .A..........T................ TGTCGCGCAAGGCGATATAATCCCCTTTTCGC 62146 29 93.1 32 .A..........T................ GCCATCTATTCAGGGCGACTAAATGATGCTGT 62085 29 93.1 32 .A..........T................ GCAGAACGAGGCGTCAGTCTGCCGGAGATAAT 62024 29 96.6 32 .A........................... CACGTAAACGACTGAGTGAGTACATAATCACA 61963 29 96.6 32 .A........................... GTGAGTTTTTATTTCTGATTAGGCGTAATCAG 61902 29 96.6 32 .....................T....... AGCGGGAGTGATTTAAAACCGGCGTTATACGT 61841 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGGATAAACCGACTTATTCATAACATCATAGCCAGCCAATAATGTGTTCCCCGCGCCAGCGGGGATAAACCGGAACACCGGCGCGAGAATAAATGAGGCGCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCACCTCAGAACGCGTCGACTGGAGCGCACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGAAAGGTTGCAAAGCCGCTAAAATGACGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTATTTACAATGTAAATATAAATGTATTTCAATGTGTTCCCCGCGCCAGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCCCGCGCCAGCGGGGATAAACCGGCACAATACAACTCCTTTCGTCTCGCAGTCAG # Right flank : AACTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGGCGTTCTATTCTTCCAGGAAGTGCCTTATCTATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCTGCAGGGAATGCGGCTGTTTTTGCTCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTTGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTGGTAGCGGCAATTCGATGACTGCGGGCAATTGCCAGCGCCCGGTCGCGCGTTAATTTCCTTACTGCTTCAGGTGTTTTTACGCCACTGTTGAAATACAGCTTATCGCCAACAATCAGATTATCGAGGTTAACCACCAATAAAGTATTTTTCTTTTCGGTATCACTCATGCGCTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63944-63061 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATQ01000028.1 Escherichia sp. E3659 sequence28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63943 29 100.0 32 ............................. TTTATCAGCCCACTCAACCCCCGTCATCGGTA 63882 29 100.0 32 ............................. TTTGATAAACCAGCGGCGGCGGGGTGACAATG 63821 29 100.0 32 ............................. TATATAGCGTGAATTTTGCGAATTATGCACTG 63760 29 100.0 32 ............................. GCGCGGTCGCTGCAATTATGGGCGTTGGCCGC 63699 29 100.0 32 ............................. TTATCCCATTCCTCGATTCTGACTCTTTATCG 63638 29 100.0 32 ............................. CCAGCCTTTCTCCCAGGCTGGCAAAGGCGCTG 63577 29 100.0 32 ............................. CCGCTTGGCGTATTACAGCGCGACTACGCGGG 63516 29 96.6 32 ............................T GAGTCAGAGGCATCAATCACTACACTGAATAG 63455 29 100.0 32 ............................. ACCATATCGAATTGATGGCGCGGGCGGGCTAC 63394 29 100.0 32 ............................. CCTTATACGATGTCAATGGTGCCAGAAATTTA 63333 29 100.0 32 ............................. ACTTATTCATAACATCATAGCCAGCCAATAAT 63272 29 100.0 32 ............................. GAACACCGGCGCGAGAATAAATGAGGCGCTGG 63211 29 100.0 32 ............................. CCACCTCAGAACGCGTCGACTGGAGCGCACCA 63150 29 100.0 32 ............................. CGGAAAGGTTGCAAAGCCGCTAAAATGACGGA 63089 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCGCCCCAGCCTGGTGCTGGCACACAGTGCCCGCACATTAATGGACCGCTTTAATGAATCACTCTGGTCTGGTGATTTAGTCGGGTCAGAAGAACCGGACGAACAAACGTTCAGTCAGGGATGTGCGGCCTGGTTTGCCGACAGTAACAAGAAGGCGTTGCTGGCTGAAATTGGCGTCGGCACTTTGGATCAGGCGATGATGGCGGTGCTGCCGTTCAAACATAATAATCTGCGGCTTCTGGGGCTGAGTAATAAAATCCTGCTGGCTGATGAGATCCACGCCTGTGACGCTTACATGTCGTGCATTCTTGAAGGGTTGATCGAGCGGCAGGCGCGCGGCGGAAACAGCGTCATTTTGCTTTCTGCTACGTTATCCCAACAGCAGCGCGACAAACTCGTCGCCGCCTTTGCGCGTGGCGCAGAGGGTCAGCAAGAAGCTCCGTTCCTGGAAAAAGGAGATTACCCCTGGCTGACGCATGTCACGAAATCGGATGTGAAT # Right flank : TATTTACAATGTAAATATAAATGTATTTCAATGTGTTCCCCGCGCCAGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCCCGCGCCAGCGGGGATAAACCGGCACAATACAACTCCTTTCGTCTCGCAGTCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGATAGTTTGATAATGTGTCATGATTAAATTGGTGTTCCCCGCGCCAGCGGGGATAAACCGACATACTTTGCAGGCGATCGGCAGCTCTGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTCTAGCTATCGTATTCAGCGACTTAAAAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTATTAATCAGCACCCTGTCATGATCTTTTTTGTGTTCCCCGCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 82987-81982 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATQ01000028.1 Escherichia sp. E3659 sequence28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82986 29 96.6 32 .............C............... AAAAAAATCGACCTGAGAAAAGCTGCACGTGG 82925 29 93.1 32 .............C..............T CGATCTCATAGGTCTCGATATTGCTGCCGGAA 82864 29 96.6 32 .............C............... CTATCGCTGCTGCCTCGGCCGTGTCCGTTGCG 82803 29 93.1 32 .............C..............T TGTTATATTCCTGCCGTGTCAGACCACATTTC 82742 29 96.6 32 .............C............... ACGCCAGCGGGTGGAAACTACTACCTCAATCT 82681 29 100.0 32 ............................. GTTGCAATGATTAGAATAAATATTGTTCCTGC 82620 29 100.0 32 ............................. TTTTCAGGCGGCTTGTCGCGCGCTTCACAAAG 82559 29 100.0 32 ............................. CGGGCACCGCGCACGTTTTCCAGTAAAAGCGG 82498 29 100.0 32 ............................. CCGAATTCAGTGGGTGCGTGTGGATCTGGTCC 82437 29 100.0 32 ............................. CAATGATGGACAGTGCTGAAATCGGGGAGGTA 82376 29 100.0 32 ............................. AAAATTGCTACAGATAACGAGACGGCACAGAA 82315 29 96.6 32 ............................T GAGTATCAGTAAGCAGGAGGGCAGTCCGGTGC 82254 29 100.0 32 ............................. AGATCACGCGCGAATGCTGCGTAATCGAAATA 82193 29 100.0 32 ............................. TTGTGAAGCGATGCCATATCTGCGAAATTCTG 82132 29 100.0 32 ............................. TAGAGGGTGACAACCTTAACGGTCTGCATAGA 82071 29 93.1 32 ..........T..C............... CTCGGTGATTTTCTTGATTCGCAATTGATGAA 82010 29 79.3 0 ............TT........C..T.AT | ========== ====== ====== ====== ============================= ================================ ================== 17 29 96.8 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACTTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACCCATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACCCATTTATATTTTTTGTCGCCTCTGAAAACTCATCCATTTTGCCCATTCCGGACTAATCATTGTCATTCTCTACAAATTCTGTGGCGTTAATTTTTCTCTGGGATGAAAATTATTACGTCGGAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTCAATCAACGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTCGACCAGCTCTGGATAGAATCCGCATTCCCCAATTCACCATGCATCACTTCATACGATTTTTTCAGAATCACATCAGTGTGTTTGGTTAAATCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCATTGCCCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGATACAACCCCAGACCTACCGCCGTATTAATCGCTGCCCCCAGGCTTGCACAACCGTTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATTTGCATAAACAGATCGCTGTTCGAACCACCGCCAGTAATGATTACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGGTATATCCATGCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 551-2080 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATQ01000007.1 Escherichia sp. E3659 sequence07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 551 28 100.0 32 ............................ ACGACAAACGGCGCGTCCAGATCGCTTGGTCT 611 28 100.0 32 ............................ TCATTTCGCGCCGCCGTTACCAGTTCCTGAAT 671 28 100.0 32 ............................ GTTACGACTGGTGGCAAATAACCTGAGTGATA 731 28 100.0 33 ............................ CGGCCATCAAGGCCATCAGAAAGCATTCATTTT 792 28 100.0 32 ............................ AGGTTATGCCTATTCCTCCGCTTCACTACCTC 852 28 100.0 32 ............................ CCTCCTGGCTTATATCTACAATTTCAACAACC 912 28 100.0 32 ............................ AGCCCACACAGCTACTCGATCGTTACCTCATT 972 28 100.0 32 ............................ GTTGAGGCCAGCCATTTTTCCGACGTTATCCC 1032 28 100.0 32 ............................ CACTGGTATCCCGCCTTGATGCCATATCTGAA 1092 28 100.0 32 ............................ TGCATTGGCTGACATAAAAGAACGAGTAGACG 1152 28 100.0 32 ............................ AGATTCGCTTCATACGCCTCAGAATCAAAATT 1212 28 100.0 32 ............................ TTTACGGACAGAACCACGTGTTTTATCTGGCG 1272 28 96.4 32 ...A........................ TTTATGAGCAACCGGGTAGAACAGGCTGAAGA 1332 28 96.4 32 ...A........................ TAAACATCGTTGATGATCCCACATACGAGCAC 1392 28 96.4 32 ...A........................ AAATGACGCGACACGATGGCCTTGTAGGTTTG 1452 28 100.0 32 ............................ AGAAACACTGAAAGCCGCGTTATCAGTTATTC 1512 28 100.0 33 ............................ CTGGCACAGCGAACTCATTGCGGGCAGTGTAAA 1573 28 100.0 32 ............................ ACAAGGTTCTGCTTTGCTGCCTCCTGAATGCT 1633 28 100.0 32 ............................ GTCTGCGGTGGTCAGTGCTTCCGGTATGACTG 1693 28 100.0 32 ............................ GATTGCCGGTCGCGACTTCCTCCAGTCCTCGC 1753 28 100.0 32 ............................ ATAGCGTATACCGCTGGAATCTAGGGTGATTA 1813 28 100.0 32 ............................ ACAAGGTTCTGCTTTGCTGCCTCCTGAATGCT 1873 28 100.0 32 ............................ TTCGGCAGATGGTCCGAGGCCATGATGATACG 1933 28 96.4 32 ..........................G. TGGCATTGAGTCGGTAATTTTGCCGTTGGTGT 1993 28 96.4 31 ............G............... GCAAGCTGTCTCGCCCCTTCGGGCTTCCGGC G [2019] 2053 28 82.1 0 ..A.T...............T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCATCCCCGCCAGGCTGTGCAACATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACACGCCGTTTGCGTGACGGAGATTATGAGCGTATTTGTTCTGTTCAATTGTTTATCAAAAGCTATGCATAAAATATGAGATTGAAGAAGTACCAAATTGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTTTTCTTGCTATTTTGAAGTCTGGAAAAAGGGGTTGAATCTGCGACTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTTAACACACCATCCTCCAGTATTTATTCCCCGTAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGGGCGGTGAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //