Array 1 157251-157398 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGW01000001.1 Gilliamella apicola strain WF3-4 Gilliamella_apicola_WF3-4_contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 157251 28 100.0 32 ............................ GTTAACTCTAATGTTTGTACAGGGCGAGCGGG 157311 28 100.0 32 ............................ ATAGCTAAACCCTCCAATAGTGATACTTGAAT 157371 28 92.9 0 ........................A.T. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 97.6 32 GTTTACCGCCGTGTAGGCGGTTTAGAAA # Left flank : TTTTATTAGCCAAATTGGACGATCATGTTGATTATGTTGGTGAAACCAGTCTAATCGACTCTCAACAGAAACCGGCTCCGTGTCGGCAGTAACTTGCCTGCCGGCAATTGTTGAATTATAAACATCAACAATAAAAGGCAAATCGGTTAATGTGGCATCTTGATAAGTAATCATAGCTTTTGTTATAAGTGATTAAAGTAATTTTATTGTAGTTTTATTATTTGTTTTAGGCAATAAAAGATATTTTTTCAACAAAGAAGATAAAAGCCAATCGTTTGTTATTTTATCAAATAATATTAGGATAATATTGTTTAATAATACTGGATGCTGACCAAATGGGTTGTTATCATCCTACCAAAATCCTTGCCAACCCTTTTTTTTAACAATAAATTAAAGTAAATAAAAACAAATAGTTAAAGTGATGCCTAATAAAAGGGTTTTTGAAGATAAAAATCTTATTTGCCTTTTATTAAACAACGTTTATAGTATATTCGATTCTA # Right flank : ATTTTTCTTTATTGTTATATAGATCATGCCTGCCTGCTAATATATAACCGTATTTCGCTAATTAAAAAATTAAATAAAATCAATGGTTTTTCTGAACGATTTTTATGTGTAAAATGGACTAATTTTTATATTTATTTTTGTTAGTTAACTCACATTATTTTTAAGTCAATTCATCTTCTCTTTAAATTAGAAAACATAAAATATTGTAATGTTAAATAAATATGTTAATGTGCCTTATGTTGCTTTTTATCTATAAAAGCAATATTTTTTTGTTAAAAATTTTATACAGAAAGTTAAAATAGTCAGTAGAAAGTTATTACGTATTTTTGAAAAAAGCTTTTAATTAAATTTGATGATAGAGGTGAAATTTTTATTAGTATGATTTTATACCATTAAAACAACATAAAGTCGATTTTATACAATATGTTATGCTGTTTTAATGGGACATATTTAATATAATGCGTAAAAATAGCAATTTTGAGTGGCTTAATTACCTATAT # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 33983-33562 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGW01000052.1 Gilliamella apicola strain WF3-4 Gilliamella_apicola_WF3-4_contig56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================================================================================================== ================== 33982 26 100.0 35 .......................... CCGCTATCCGTGCGCAGATTATGAAAGAGCAGCGC 33921 26 100.0 35 .......................... CCGCTGATTTTCGCCGGAACTAACTTTATATCGCG 33860 26 100.0 123 .......................... CCAGGAGATGACTAATGACTAAACATTCTAAAACGATTGCAGATTTAGAGTCTGCTATGCTCAATACAGAAAAATCAAAAAAAGCGTTCGAAGCTGCAGAATATGAATGGCGATTAAAAGAGC 33711 26 92.3 35 ............C.....A....... CTGGTCAAGAATCAAGTTCATCTTCAGGAGAAAGT 33650 26 80.8 36 ........C..G..A.T.A....... TATATTTAATTTTTAATGTGTTTTTTTACTTGTTGG T [33626] 33587 26 73.1 0 CATA.....A........A.....T. | ========== ====== ====== ====== ========================== =========================================================================================================================== ================== 6 26 91.0 53 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AAAAACACACGCATTTTAAAGCGCATAGGAACCGAATACCCCTCTAAGTCAGCAGGTATTGACGGCGCACCAATGGATTTTAATTACCGTCAGTATTTAACAGAAGATGAAGCGCAGATTGTTGATAATGCTGTTTTAAGGCTCAAAGCGGATAATATTGAATATTGGGCGGTATTAACCTCTTTTTATCTACGTGACATTTCATGCAGTAAGCAAGCAAAAATATTAGGTAAGCAAACAACAGAAATGACAAAAATATTATTAGCAGCAGAATGTTTTATACGGGGGCACATTATTGAATTATTCCCAAAAGTGGCGTAGATAACCATGATTATAAAAAGAGGTATTTTTGATTGTTAATTAAAATTTATTTAAAACAAAATGTTATGTCTGATATAATCTAATTGGCCATCGCATAAGTGGTTTAGCAAAAGCGCTTAAAAATTGGTGGAAAATTTTAGTTAATTATTTTATTTATAAAACAAATAGTTATAATTAGA # Right flank : CCCGTGCTTTTAGGTGTAATGAGTGAACTTCGTCCCAAAATGGACAAATGCCATGCCAGTTAAATATAAGTATGTCAGGTTATTACCAAACGTGGACCCAAATTAAACGGGCTATTTAGTTATATCAAAACATCTGATTAGCGATATAAAGTACGTTTAGGTGTAGCTTAGTGTACGATATCAGGAACAAAGGCTATGATATAACAGAAAAACGGCAAATCGGGCATGATAAAAGTCATTCAGAAAACCTATTGATTTTATTGAAGTTTTTAAGTGGTGGTGAAAGGTGACATTAATGTTTTTACCACAAAACTACCTTAGTTTAATTCTATGCCTAAAATTATTCATACACTAGAAATGGAGCTACAAATTATAGTAATAAAAAAAGCGTGAAATATACAATAAAACACTTGACTGTTTAAACGTTTAAATATATGATATGCACATGATGCGGTTTTGAGCGCGCAGAATTTAAGCCCACTAAAATAGTTGGGCTTTTT # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-1.87, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14129-14276 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGW01000007.1 Gilliamella apicola strain WF3-4 Gilliamella_apicola_WF3-4_contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14129 28 100.0 32 ............................ TGCGCACCTTCGACATTTATTTTTGAAAAATC 14189 28 100.0 32 ............................ TTTATCGACTAAGTCCATTTTGCAGTTTTCCC 14249 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : TGCCCTTTATCGTTAATAATTAGATATTATCACTGCCACCAACCCCTTTAAATTTTTCAACCATTGTTGCTATTTTTTCAAAAACCCGACGTTTTTTGATTAAATATTGTGGATTAAGTGGGCTCATCTTCGGTAACATTTCGTTTAATTCAGTGCCATTTTCGGTTGCATATTTGCGTTTTAATGAAGAAGCTAATTGATATAGATTATCTATTTATAGATAGATAAAACTTGAATCAGAAAACGCTTAACGCCATTTTTAATGGCTTTTATTAAAAAACGAATGTAAAAAAGCGAAGCAAATTAGTCTTTGGTTTTTAGGTTTAGGTTGTGCTATGTTATGACAAAGTCAAAAAACTAAAAGCCAAAACCCTTTTTTTCGCCATATTTTAAAAGTAAAGAAAATCAAATAATTAAAAACTTTCCTCAAAAAAGGGTTTTTAATACCTAAATCACTATTTGCCTTTTTACATACAATATTGATAGTATATTAGCTTCTA # Right flank : ATGATAAATGATCTCCTAATAACGATAAGCTGTTTTGCTGAAAAATACTTTACGCAGTATTACCGTATGATAAAAGCGAATAGAGCGTTGTCAACGTTATGAGGCGCTAGTTATTTGTTGTTTTTGCCATATCTCCGTGAAATATCTATCTCTTTGGGCTGTTTTATTCGTTTGTGGGCATGGGGGGGATTTTGTCAAATTTGATTAATACCATGGTTATCATATGTTATTAACAAATAAGATACTGTAAGTTTTTATTTATTTCGAAACGGCATAGAATCCTGAATATTTTTTACAAAAAAATAACTTAAAACGTGACAATTGTGTAAATATATTCATAATGATCATACAACCACGTAAAAATTACGTTGCTTGTTTTTTGTGTGGTATATGCAATGGGTATTATGTTAGTTGATGCTTGATTAGGTCTTTTGGGGTTATCAATGGTTGGATAATTGATCCATAATTCGTTTAGCCAAATTAATAGCGATGGTTTTTTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //