Array 1 4-823 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIC01000054.1 Haloterrigena hispanica strain CDM_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 .............................. CGGGAATAGCTATCACGTTGATCCTGGGTGCCAGCAC 71 30 100.0 37 .............................. CGAGGTGACGACCGATGACGATCGTCCGAGACTACGA 138 30 100.0 37 .............................. CGGGAATAGCTATCACGTTGATCCTGGGTGCCAGCAC 205 30 100.0 37 .............................. CGAGGTGACGACCGATGACGATCGTCCGAGACTACGA 272 30 100.0 34 .............................. CTTATTTTGATGTTTGACGAGCCATTTCGGACGG 336 30 100.0 35 .............................. GAGGCGCATCTTGCTGACGGGAAGACGCTGCCGGT 401 30 100.0 36 .............................. AGGCACGACTCGGGGACACCGTCGGTCTCTTTGACG 467 30 96.7 33 .............................A GGGCTGGCATGGGGTAGCGGTCATACTGGATCG 530 30 96.7 37 .............................A TCGGTCAAATCGGTCTACGTCGAAGGCGAGGAAACGA 597 30 96.7 36 .............................A CTGACGAGTCCGGCGAGGAGAAAACTGGCCGTGACT 663 30 100.0 36 .............................. GACGAGGAGGTGCGCGACCGATGACGCTCGAGTGCC 729 30 96.7 35 .............................C CTGACGCAGGTGAACGACTATCAGCTGAACCACAA 794 30 80.0 0 ...A...C..A.....C..C.........C | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 97.4 36 GTTTCAGACGGACCCTTGTGGGGTCGAAGT # Left flank : CGAG # Right flank : CATCGAACAGTGGGATAAACATCTTGTTTCAGACTTACAAAGAGTCGATCAGATGGGATGATCTCGGAGAGAGCCACGGCCATGAGACTGGCCGCGTGGAACTGCAATCAGGCGTTCCGCCGGAAACAGCACCACCTCCTCGACCTCGAACCGGACATAGCGGTCGTGCCGGAGTGCGAGGATCCCGAAGAGAAGGGCGACTGGTCGTCGTGGACGGACTGGGAGTGGACGGGCGGCGACCCGCACAGGGGCATCGGCGTGTTCACCCGAAACGACATCGCCATTTCGGACACAACGGAGATTGCCGAGGCCGACCACTTCCTCCACGTGGAGACCGATGCCGTGGACGTTCTCGCCGTGTGGGCGATGAACGACCGAGAGAACCCGCGACAACGCTACATCGGTCAAGTCCACACCGCCCTCGAAACCCATCCCCAGTTGGTCGACGAGGACACGATCATCGCCGGCGACTTCAACTGGAACGTGACGTGGGACGAGTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGGGGTCGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 11032-12771 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIC01000050.1 Haloterrigena hispanica strain CDM_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11032 30 100.0 37 .............................. CGAATCGCTTGGTTCGACTTCCCAAGTTGATCCGCTA 11099 30 100.0 35 .............................. CGAATCACCGATTTTGATTAGCGCCTGCGGGTTCG 11164 30 100.0 35 .............................. AGAATGAGTTGACAGAGTTCCGTATACGTCTGATT 11229 30 100.0 35 .............................. CGCAGCTACTACGACGAAGACATTCGAGAGTTGGC 11294 30 100.0 35 .............................. ACAGACAGGAGTCGGATGAAGTGTCACCACACGCG 11359 30 100.0 35 .............................. CGTTCAGACGGCTCTATTGACCCACTGAGCGAATC 11424 30 100.0 36 .............................. TCGCTCGGTACGGCACTCGAGACAGGCAAAGGCAAT 11490 30 100.0 37 .............................. AGAACTGGGAGGTTGAACGTGTCGCTGGCGGCGAGGC 11557 30 100.0 35 .............................. GGCGACCGCGGCGGCAAACACGATCGTGAGCGACA 11622 30 100.0 37 .............................. TGTCGATACCACCGCGACCAGTGGGAGGACGATCCAG 11689 30 100.0 36 .............................. AACGAACACGCAGACAACCCGGATTTTGACCCGTCG 11755 30 100.0 36 .............................. TCTCCCTCGATCCACTTGCCGAGGACGTCTCGCATG 11821 30 100.0 37 .............................. TGCTCCTGTTCGTTGTATGTCTTGTCCGTAACACGGA 11888 30 100.0 36 .............................. ACGCCGCCGAGGAGCGAGGGGACAGCGCCGACTACG 11954 30 100.0 34 .............................. ATCCGATGCTGTGGCGCGTCGGGAAGATCGTCAA 12018 30 100.0 37 .............................. AATATGCGGACTCTGATACGGAGTGGACAAACGTAAC 12085 30 100.0 35 .............................. GAGGGCAAGCCGATCACGCTCGCCGACAGTCTCGA 12150 30 100.0 34 .............................. TGGGCGGCGATGACGTCCCGGACTTCGCGCCTCG 12214 30 100.0 37 .............................. GAGGCCTACATCCACGGCATCATTTCCTGATATACAT 12281 30 100.0 37 .............................. GGCTGGGAAAGCACCCGCCGTGCGCTCGACGTCTCGA 12348 30 100.0 35 .............................. AAAATCGAAGCCGAGGAAGACGAGTCGCCGATCAA 12413 30 100.0 36 .............................. GAATCGAGAACTCATAGCAGGATGCTGAATGTGGGT 12479 30 100.0 37 .............................. GTGATCACGCCGATCTCGTGGACCTCCTCGAGGACTC 12546 30 100.0 36 .............................. CTCGACGACCTCCTCGACGAGACGACGACCCAGGTC 12612 30 100.0 35 .............................. AGAATGTGGAAACGAGTACCCTGTCGGTGGGGACA 12677 30 100.0 35 .............................. GCTTGCAGTCCATGTTTCCCCATTCCCAGGCTCTC 12742 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 100.0 36 GTTTCAGACGGACCCTTGTGGGGTCGAAGG # Left flank : TTGACCACCCGGACTTGGGAAAGAAGGTGAGCTACCAGTATCTCCTTCGTGTCGAAGCGTACAAACTGAAAAAACACCTCCTGACCGGCGAGGAGTACGTCCCGTTCCAACGGTGGTGGTGAGTGTGGTCTACATTGTTGTGGTCTACGACATGGAAGCCGATCGTACTCACAAGATGCTGAAGTTCCTCCGCAGATATCTCACACACGTGCAAAACTCCGTACTTGAAGGAGATGTGACCAAAGGCGACCTCAAAAAGATCCGATCCGGCGTCGACGAAATACTCAAATCCGGAGAATCAACTATCATCTACCACGTCTCCTCTGAAAAGATGGTCGAGAGAACCGTCTTTGGTGACGATCCTGCCGCAGACGATCAGTTCCTCTGACTGTCCTCGGTTGTTCCATCGACCCCTGGGGGTACAGAGGTTATCGCAGGTCGACGGAAACGATGAAGTGTAAACAGTCAATAGAGCTATTTACGTGGTCTAACCGGCCATG # Right flank : GGGACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGGGGTCGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 11551-11296 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIC01000029.1 Haloterrigena hispanica strain CDM_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 11550 37 100.0 36 ..................................... CCGTCGTCAGTGGCCTGCTGCCCGTCGAAATAGCCT 11477 37 100.0 34 ..................................... TTGGCGTTCGGTCTGTGGGTGCGGGCTGTGCTCG 11406 37 100.0 37 ..................................... TACGTCGTGTGGTTCACGATCGGGTCCTGCACCTCGA 11332 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 36 GTCGCGACGCCGTAGAAACCCGACCTGGGATTGAAAC # Left flank : TTGAAGCTGCCGAGGGGACGGTGGTACTCAACTTCGACGGGGGCCCGCGGGAGATTTTCCTCCCGCTGACCGTCGCCGCGATCGCTCGGCCGGAGGTTGTCGACCTCGCACTCCAGTTCAGGGACGTCGACGAGGTGATCGAAGAGATCGGTCTTCCGAACCTGATGAGTCGCCCGTCCGACGCGACCCTCGATACGCTCCGATATCTTGTCTCCATCGACGAGAGTACGACACTTCCGAGAGTCTCCGATGAGACCGGGAAATCAAGGAGCACTATCGGTCGACACCTCGACGCGCTCGACTCCGATGGCGCCGTCGAGACGTGGATGGAGGGCAAAACCCGCCACGTCGCACCGACACTTGCCGGCCGACTCCGCACGTGAGTACCAATCTTCGTCAACCTTTTTCAAAGCCGTGTACAGGTGGGGTCCACGAATGACTCCTACATTCTCGCAGCCACAGAGAAAACTATAGGTGCTATCCCTCAGAAAACACCCCCT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACGCCGTAGAAACCCGACCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 2 24685-25010 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIC01000029.1 Haloterrigena hispanica strain CDM_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 24685 37 100.0 35 ..................................... AAAACCAACACGGTCGCCGCGAAGGACCTTCAGCG 24757 37 100.0 36 ..................................... TCTGCCCGGACCCCGACGCACTCGCCCTCGAGTCCG 24830 37 100.0 35 ..................................... CCGTCATCGTCCGAATGGGGCGCTGATACCAACTA 24902 37 100.0 35 ..................................... ACCGTCGCTCAATATGCACACGACTTTCTGCGGCT 24974 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 36 GTCGCAGGGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC # Right flank : CAGGTTGCCCATTGGTGAGCGTGTCATAGAAAGCGTCACGTGCGAAGCAGCAGGGTGCGCGAAGTGTGTCCAACACAAGCGCAACCCTGCAAGACATAGCTTCGGTAGACGACTTCTTGAATGTCGCGGCCACCGAGACAGTACCGCTGTTCGAACACCTTGAGTTCGAGTTTCTACTGGAATACGACGTGTTCGCCCCCTCGAAGCGGGGGCGAACACGAGTTCACCAGCCACCAGACCTCTTTCGCGGCTTTCTGCACTGCTACTACAAAGACACCTACGGCACACGTCCAGTTACACGAGAACTCCAGCACGGCCTCGTCTGGTACTACTGCGGACTCGACAAACCACCGTCTAGAGACACGATTGACCGGTTTCTTACCGACCTCGAACACGTCGTCGACGAGATCTTCGAGAGACTCGTCGAGCAGGCCGCTGCCCGCGGCCTGCTCGACTCGACGTACTCCATCGATTCGACGCACATCGAGGCGATCCAGTAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : NA // Array 3 26122-26378 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIC01000029.1 Haloterrigena hispanica strain CDM_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 26122 37 100.0 37 ..................................... CCGGGATCGCGGCTGCACGGAGGGACTGAGATGACCG 26196 37 100.0 36 ..................................... CGCCGATCTCGTAGCCGTCGCCGACGTCGTAGACGC 26269 37 100.0 36 ..................................... CGGATGGTGGTCGGCGGGGCGATGACCGAGGGCAAC 26342 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 37 GTCGCAGGGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : AGGCCAAACAAGCAGACCAAGAGACGGCGATGCGCGTCACACGTGACGCGCTCGCCGTCGACACACCGACCTGGATGCTTGGAGACAGCGCCTACGACATCCTCGATTGGCACGACTACCTGCTGACCGCAGGAGTCGTGCCAATCGCTCCATACAATCCGCGAAACACTGACGACCCGAAAGACATCGAATACAGAGTCGAAGACCGGATCGAGAAACACAGCGAGGACGTTCAGCTGAAACAATCCATCTTGGAAGAGACGTACAACAACCGGACAGGGGTCGAACGAACCAACGATGCAGTCAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTCCACGCACGAACAGAAGTGTTTGTTGCGCTGTGTCTTCGGATCGTCATTGCAATCACCAACTACGAGCGAGGACACGATCCAGGACGTGAGAAGCTCAAGCTATGAGTTGGATTCTATGACACGCTCCATTGGTTGCTGCTCTTTGGCGAACGC # Right flank : CAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA // Array 1 1-287 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIC01000026.1 Haloterrigena hispanica strain CDM_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 1 28 100.0 37 ............................ GACTCGAGTCGAACGTCGTCAGCGACGTCCCGCTCGA 66 28 100.0 39 ............................ GGGCACTCGATGGGATCATCCACATCGATACGTCGATCG 133 28 92.9 37 .........C.............T.... GCCGCTCGAGGTCCGTCGAGTGAGATCACGCTGTGGA 198 27 82.1 33 ........G.T.-T...C.......... ACTCGTAGAGGTAGTCGCGACAGATCACACAGA 258 27 85.7 0 ....A....-..G..........T.... | C,AG [274,278] ========== ====== ====== ====== ============================ ======================================= ================== 5 28 92.1 37 GTTCGAGATAGACCCTTGTGGGGCCGAA # Left flank : | # Right flank : AATTATAAGGTAGAGTGGTCTGCGTCACTTCTGCATCGTGGCTACGCCAGTACGCTGTTCAAATCCGGCGGCTCGAGCGGATACTTCCAAAACGAGTATTCAAATCAAATCCCGATCACTCATCTTTATAATTTCGAGTGCTACTCGTTGTTGATGCCGTCTCCTTCAAGTTCGATGTGGGTGTGCTCAGTGAGCCATTCGTCAACCGGTTGTTCAACACCCTTCACTTCGAATACGGGTTCAAGCTCGAAATGATCAGAGACGAGCTGATCAATATCGTCAGTCGTGAGAGCCCCGCGATCGTGATATTCCTCACCAACTCGAGCAGCGAGAGAGACCAATGTCTCAGGCTCAACCATGACGGTGACAGTGACGCTCTCAGTCTCGCTCATTCCTCGCTCACCTCAGTGTCACCGTCCTCAACAGCCTCAAGTGGCATATTAGGGTTGACTGGAGCACCGTCAACAGTGACGTAAGCGTTGCCCGTCTGAGTGTAGTTC # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGAGATAGACCCTTGTGGGGCCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //