Array 1 3617-5770 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDJP01000044.1 Halorubrum amylolyticum strain ZC67 scaffold44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3617 37 100.0 37 ..................................... CGAGCGCCGGCGGCGACGAGTACGGCACCGACCAGAT 3691 37 100.0 37 ..................................... TACACCTGCTGGTACGTCTCGGCGTCGTCGGTCAGAT 3765 37 100.0 37 ..................................... CACCCGAGCCTTGACGACTGTAAGAGGTGCTCGGCAT 3839 37 100.0 36 ..................................... GCCGTCGGCCGCATACCCCCAATCGTACTCAAACGT 3912 37 100.0 35 ..................................... TGTACTCATACAGTCGTGTTTGCCGCGTTGCTACT 3984 37 100.0 37 ..................................... TTGCCCGTCGGAAACGACGTGACGACGAACGGGGCGT 4058 37 100.0 38 ..................................... ACGGCGACGTGTGAGAAATGGACCGGGGACGATCTGAC 4133 37 100.0 37 ..................................... CGAGCGCCGGCGGCGACGAGTACGGCACCGACCAGAT 4207 37 100.0 36 ..................................... CCCGGGAGCGTGAACCTCATCGATGGCGACGACGTA 4280 37 100.0 37 ..................................... AAGTGGCGCGTGGGTGTTACGGCGGCGGGGTACCACA 4354 37 100.0 34 ..................................... GTCATGGACGGACAGGAACTCGTGACGAGCGAGC 4425 37 100.0 35 ..................................... GCGAGTCGTTTCGAACAGTGAACCGGTCACCGCCA 4497 37 100.0 35 ..................................... AGTTCACGCCGGCCGAGCTCGCCGATCGGATCGGC 4569 37 100.0 36 ..................................... AATTCGTTCAACGGCGAGATGTACACCGAGTATATG 4642 37 100.0 36 ..................................... TATCGGATCGAGCCGCGCGACGAGTAAGCGCCGCCT 4715 37 100.0 34 ..................................... GGCCGAATGAGCGAGTACATCGACGTACCCGAGG 4786 37 100.0 38 ..................................... CCGACCGTCGACGACCCGACGCCGGCGCACAACATGAT 4861 37 100.0 36 ..................................... ATGATGTAGTGGAGCCCGATCGTGTCGCCCGCGGAG 4934 37 100.0 36 ..................................... CCCTTCCCGTACAGCCCGATCGCGCTCGACAGGATC 5007 37 100.0 36 ..................................... TGGTCGGCGATGAGGTTGTCGCGGATGTCTTCGGCA 5080 37 100.0 35 ..................................... GGCACGGTCGGCGTCGGGCTGCTGCAGATCGTGCG 5152 37 100.0 36 ..................................... TTTATCGACGGCCACCCACCCATGTCCGACCACGCT 5225 37 100.0 37 ..................................... TGACGAGCACTTCGACGAGCCCGCGCCCAGTCGGGAA 5299 37 100.0 34 ..................................... CTCGCGGCTGCGAATCCGAAGTACGGCCGCTACG 5370 37 100.0 36 ..................................... GCGGCGAGTTCGTCTCCGAAACGACTGACGCGGACG 5443 37 100.0 37 ..................................... ACCACGCACAACCCGCGGCTGCCAGTCGAACGCGAGC 5517 37 100.0 35 ..................................... ATCGTGCCGATGGAAAACCCGGAGGGGACGAACGC 5589 37 100.0 35 ..................................... CGAGCTGCCGACCGCCCGCTGGGGGACACGAAGGC 5661 37 100.0 36 ..................................... GCCTGACGTGGGATACCTCGACGACCGAGTCGACCA 5734 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 30 37 100.0 36 GTCGAGACAGCTAGAAAACCCAGTACGGGATTGAAAC # Left flank : TTGAGTATACCGTCTCACGGCGGAAGGCAGTCCGACAACAAGCGATCTTGTTGCGGAAAGCGATCACTGGTGAGCTGGACGAGTATCACGCATTGACGTTCTCGAAATGACCATGCGCTTGGCGATCGCCTACGACGTAAGTGAGGACTCGAACCGCCGGCAAGTGTATCGAACGCTCCAGCGGTATGGTGCGTGGCGACAGTACAGTGTCTTTGAGGTCGACGTAACGAAGACAGAACGTGTTGAACTTGAAGACGAACTCGAATCCCATATCGAGCCATCCGACGGTGATCGCATCCGGATCTATCGTCTGTGTGAGTCTTGCCAAGACAACACGACCGATATCGGTTCGGAGCCTCCAGACGAGCAATCGAATGTTCTCTGAGTTAGGCTACGTGGACCTTTATTAAATCCGTGTACAGCCCCCGTTGACGTAACCGGGGTTGAATTTCGAGAGTTGAGAAAGGTTTTTGGCTCCTATAGCCGTAATTTCACCCCCT # Right flank : CTCGCTGCAGTGTTGAACGCAAGACAGCGACAGAATCAGAATTATGATATTAGATTTTCTACCGGCAACTACGCTCTCTCTGCGGATTCTAAGATCAGACAATTCGATTTTAGCGGATTTGCGCAGTGATCAAAACATCAGTTTCACAAGATACCGCACGAAGTATGAGGTGGACGATGGCGATGCCTCTCCCGAATACGTCCGGAGAAGGGGAGCAGGCGGCGAGCCCTAACTCGCCGCCTGCGCGAGGTTATGTACGATGCACTTCCGTGTGAGCTCCCGGAATTGGCCGTGCCAACTCCGGGAGCGGATCTCGTCGCCGTCGTCCTTCAGCATCGCAAACACGGTCTCACTCATCGACCGCTGGTTGTAGACTTTGTCGTCAATTCTGGCGTTGTGTGCCTTCTTGAGTGCGTTTTGCTCGTAGTGTTTGATCACTGGACGCGTTGATGCTCCACGACAGGCTTCCCGGAGATCGCTCCATGAGTACATCTTGTCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGACAGCTAGAAAACCCAGTACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 19105-24763 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDJP01000033.1 Halorubrum amylolyticum strain ZC67 scaffold33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 19105 30 100.0 35 .............................. CGAACGATCGAAACGACCTCGGGCGCGACGTCCGA 19170 30 100.0 34 .............................. TCGTCTCTCACTCCGGCGCGTCGTACACGGTCGA 19234 30 100.0 36 .............................. TCGGGGTCGACCTCCGACGCGAACTCCCCCGAGTCG 19300 30 100.0 36 .............................. GACTCGCCCGTCCGACGCTCGACGTCGAAGATGGAC 19366 30 100.0 35 .............................. ACCAACGAGGAGGGTGAGCTCCAGAGCATGAGCGC 19431 30 100.0 35 .............................. AGCCACACCTCCCGAATCGCCGGGTACTCGGTGAG 19496 30 100.0 37 .............................. CGGCAGGTGGAGGACGCCGTCGTGGAACGCGAGTGGA 19563 30 100.0 36 .............................. TCGGTGTCGAAGTAGGTCCGCTCCGCCGTCCATCTG 19629 30 100.0 36 .............................. ATCGACCAGATCGACGGGAGCGCGGCGATCAACCGC 19695 30 100.0 32 .............................. CGAGGCCGAACACACACACACGCCGCGAACGA 19757 30 100.0 35 .............................. TACGATGACGGCGGGACGGCCTCTCTCACCGAAGC 19822 30 100.0 35 .............................. GACATCGAGCGGTTCGACCCCGTCCAAGAGGCCCA 19887 30 100.0 36 .............................. ACTCAGATCCATCAGCCAAACTGCCGTGGTTGACTG 19953 30 100.0 36 .............................. CGCGAACAGCAGCACGAGCACCTTGTCGACGAGGGC 20019 30 100.0 37 .............................. TTCGAGGCGTCGTCTCCACGAGACGCCGGCGAGCTGG 20086 30 100.0 36 .............................. ATCCGCCCGGGCCGTATCCACGCGAAGTACATCGCA 20152 30 100.0 34 .............................. TTCTTCGAACCGCCGGAGGTGATGTCTCCCTCTC 20216 30 100.0 36 .............................. GCCGACACAGAGCCATCGACCGCACAGTCTGAAGAC 20282 30 100.0 36 .............................. CTCCTGGAGCAGCTCGCCGCGCTCCCACGCCGCGTT 20348 30 100.0 36 .............................. ATGGCTCTCTCTGTGGGTGTAGTTTGGCGATAAACG 20414 30 100.0 35 .............................. CCGCAGCGACACCCCCATGTCCGAGTGAGGTGCGG 20479 30 100.0 35 .............................. CGTGTCAGACTTCGGGCCGAGCGAGATAAGGAGGC 20544 30 100.0 35 .............................. TCACAGAAGGCGCGCCTCGGCGCGTACTACGGCGA 20609 30 100.0 35 .............................. GGCCTTGTCCGCGCCGGCGTCCTCGGTGACGATGA 20674 30 100.0 36 .............................. CTGTAACACCGATCAACACAGGCGGGAGTTCGTGCA 20740 30 100.0 36 .............................. GGCCACCCGATCCCGGTCGCCATCGACTCCGCGCAA 20806 30 100.0 36 .............................. GTCGTGACGCCGCGCGGAACGTACCATGTCGACGCG 20872 30 100.0 36 .............................. GTTGAGACAGCGAGCGGCGTCTAGTGGTCGGGAGAC 20938 30 100.0 37 .............................. GGGTTCGGAACTCGTGATCGAAACAACCAGCGAAGTC 21005 30 100.0 35 .............................. TTCAAGGGTGTCGAAGGTCCGCAATGGAAGACCGG 21070 30 100.0 35 .............................. TCAGCGAGATCGTCAGGGAGGTCGCCGTCAGCCTG 21135 30 100.0 36 .............................. GGCTCGTGGATCGCCATCCCGTCGACGCTCGGTGGC 21201 30 100.0 35 .............................. GACTGACGACAGGCGTATTCGAGATCGACAGCACC 21266 30 100.0 35 .............................. ACCGTGTAGGTCCGGCTCCGACAACCGCTTTTGGA 21331 30 100.0 35 .............................. GCGACGGGGGAGATAGAGATCACCACGACCAGCGA 21396 30 100.0 35 .............................. AACGAGAACACATGGGCGAAATCAATATATACCAC 21461 30 100.0 36 .............................. TCGATAAGCCCATCCTCAATCTGGCTGTCGAGGTTG 21527 30 100.0 36 .............................. GACCCCGCGGACGACTCGTACACCTCGGGACCGACG 21593 30 100.0 34 .............................. GGGGTTCGTGACGCCCTGGACGCCCTGCGGCGGC 21657 30 100.0 35 .............................. GAGGATCCGATCGTCGACGGCACCATCGCGAAGGC 21722 30 100.0 35 .............................. CCGACATCCCCGACGGCTACGCGCACGTCGACATC 21787 30 100.0 35 .............................. CAGCTGCTCGTCCTCGGCGAAGTGATCGTGGACGA 21852 30 100.0 35 .............................. CCCCGGGCAGTGAAGCTGATCAACAGCACCGCGAC 21917 30 100.0 34 .............................. CCCTCGCCGACGGTCGCCTCGACGTAGTCGTCCT 21981 30 100.0 36 .............................. AGCGCTGACGCCGAGGAGTGCGACATGCGGGCGGTG 22047 30 100.0 36 .............................. GCGTCGAAGTTGTCGATGAAGACGAGTGTACCGCCG 22113 30 100.0 35 .............................. GGATGTCGGTCGGCGATCGTCTCGGCGACCTCGGC 22178 30 100.0 36 .............................. GTCCATCCGTCCCGGCAGTCGGTTGAGCGTGGACTG 22244 30 100.0 32 .............................. GACCGGCGCCTACAGTGGGCCCGGAGGACTGA 22306 30 100.0 36 .............................. TCGAACCCAGTCCTCGTAGCGGGTATCTTGCCACTG 22372 30 100.0 35 .............................. TGCCCCGGCTGCGAGCACGACCTCCTCCACCAGGA 22437 30 100.0 36 .............................. CGTATTGCGACATACACTATACGAACAGACGAAACG 22503 30 100.0 36 .............................. GGTTCGATCGTGACGGTGGTTGCTGCGTATGACATC 22569 30 100.0 36 .............................. GTGGGGTTGATCTCCACCAACGTCTTCGGGCGCACC 22635 30 100.0 35 .............................. GACCGTCAGTGGCTACGTCTCTGACGCGGAGGACA 22700 30 100.0 36 .............................. TCGGTACACTGAGGTCGGAGCGGGCGGCAGTGCTTC 22766 30 100.0 36 .............................. TGGTAGATTGGAGCTGAGATCGGTCTCATGTCGCTC 22832 30 100.0 36 .............................. GGCTCTCCAGCTCGTCGAGGCGCTCTAAGACCTCAG 22898 30 100.0 35 .............................. GGTGAGGTCCTCCCGACGGAGCAGCACCGTCCCGC 22963 30 100.0 33 .............................. ATGAGCTACACGGGGACGATGGAGCCACTGCTT 23026 30 100.0 35 .............................. AGCTGCTCGGTCCCGACGTGCCGCATGTCGTCGTC 23091 30 100.0 36 .............................. ATGTCTGAGTGCGCTGACTGCGGCGTCGGCTCAAAC 23157 30 100.0 34 .............................. ACCACGGGCCCGAGCCAGCGCGGCGCCGACCGCG 23221 30 100.0 36 .............................. TCGACAACCCGCGCTCCCCGACGAACCTCGATAGCG 23287 30 100.0 37 .............................. GACACGGTCGAGGCGCGTCGGACGGCGATCATGACGC 23354 30 100.0 37 .............................. CGTGGACGCGCCGTCTCGTAGGCGATCTGGCGGAGAG 23421 30 100.0 35 .............................. GGGGAGTCTGTCGACGGGCGGCAACGCGGGGCCGG 23486 30 100.0 33 .............................. GCTCGACAGTGGCCGTCTTGGCCTCCCGTTCGC 23549 30 100.0 35 .............................. GTGACACTATACCGCGAACGCGGCGACGGCGAAGA 23614 30 100.0 36 .............................. GAGATCCCCGCCACGGGTGGCCGCGTCGCCGCTCAC 23680 30 100.0 36 .............................. CACTTTCACCACACGGTTGGCGAGTCACTAAGTAGC 23746 30 100.0 35 .............................. CCGATCGGCATGGCCGCACCGGCGCACCACTCCCA 23811 30 100.0 38 .............................. CGCCGAAGCTTCGCGCAGGCGCGTGCGAAAGGCGAGCA 23879 30 100.0 36 .............................. TCGACGAGCTCCGTCGCGTCTGCCGGCGCATCGGGA 23945 30 100.0 35 .............................. GATCCATCCACCCATGGATGACGGGCAAACGATAC 24010 30 100.0 34 .............................. GACGTTCTCACCCGGTTGAAACCAGTTCGGGATG 24074 30 100.0 37 .............................. AAGAGACATTAATCGCCTCCAAAGCGGTCTGTTTGTC 24141 30 100.0 36 .............................. TTGGGGATCGCGCGCTTGACGGCGCGGCGCACAGCC 24207 30 100.0 36 .............................. TCCGCCCGGACGGTGCGGCGAATCTTCGGTTCGGAA 24273 30 100.0 36 .............................. CACCTCGGCGTCGGCGTGCGTGCCGATCGTCTCCGA 24339 30 100.0 35 .............................. TGGTTTCGGGAGAGGGCGGGTCTGCGGACACAGTA 24404 30 100.0 37 .............................. GCCGTAGTACCGCCGCTTGCCGTGCCGGACTTGGACG 24471 30 100.0 38 .............................. GTGTGGCGTACCCCGACGGCGCGGTGCATCTACAGTGG 24539 30 96.7 35 ............T................. ATGCTTGTCGCCGACGACCTCGCGTCAGACATTGA 24604 30 100.0 34 .............................. GCTCCGAGAAGCGCCAGCTCATCGAAGACCGCGA 24668 30 100.0 36 .............................. TGGAGAACGTCGGCGTTGAAGGTCGTTACCTCCCGT 24734 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 87 30 100.0 35 GTTTCAGACGTACCCTCGTGGGGTTGAAGC # Left flank : ACACTCGAACGAACAGTCGAGCACCCGACGCTGAACCGGAAGGTGAGCTATCAGTATTTGCTTCGCTTGGAGGTATACAAGCTCAAAAAGCACTTGTTAACCGGCGAATCCTATGATTCGTTCAAGCGGTGGTGGTAGATGTACGTTATCGTCGTCTACGACATGGAGGCTGACAGGACCCACCTGATGCTGAAGCTCTGTCGCCGATATCTTGTTCACGTCCAGAACTCAGTACTGGAAGGGGAAATCTCGGAGGGAGATCTAGCGACACTGAAGGGAGAGATTGAAGATCTCCTTCAGGAGGGAGAATCAGTCATGGTCTACGAACTCTCTTCGGACCAGTTATTGAACCGTACCGTGTACGGAGACGACCCGACCGAAGATAGTCGGTTTCTCTAGCTGATGTCGACCCCCAGGGGGTTTGGGGGGGATTGCGGGTCGACGGAAATGATGAAGTGTATTCCACTGGTAGAGGTGATATGGTGGACAAAATCACCATG # Right flank : CGAGCAAGATGTCGAGTTCCTCCCCATGTTCGATCCGGTCTCAGAAGAACCCTACATGGCGAGATAGGGGCCGCAAGCCCGAAATCTGGCACTCCTGCCGATCGTCCAGCACGAATTCAGTAATATACGCCGACGACCGACGCGGTTATCGCTCCAAAGTCGGCGGCTATCAGGCCCACTCATCGAGTTGTTGAGAACTTCCTATTTCATCTAGTGAAACAACTGTTGGCCTAGTGATATTGTGATGGGTTGGTGTGTAAGATGTAGGGCGCGAATGTGGCACGAACTGAGGCCAATCTACGGAAGAGAGTGATCGGTCAGTACAGGTGAAGGACACCCCATTTAGCACGATGACATTTCCCGTAAGGAGGGAAACAGATTTATATACAGAATGAAAACGTGAATGAACAGATATGACCCCGCTCAGCAGATTCCGTAAGAACATAAATTACGGACAGTTTCGCACAGCGGTCCTCCTCGGAATCGCCTCGATTCCATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 69996-63670 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDJP01000013.1 Halorubrum amylolyticum strain ZC67 scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 69995 30 100.0 44 .............................. AGCGTGACGTGGGCTGCAGCGGCGGCTGTCGCGNNNNNNNNNNT 69921 30 100.0 35 .............................. TCCTAGCCGGATACGTCACAGACAAGTTGGGAATT 69856 30 100.0 36 .............................. CCTCGGCGTGCCGAACACCCTGATGATCGGCGTGCC 69790 30 100.0 34 .............................. AGCGTGACGTGGGCTGCAGCGGCGGCTGTCGCGC 69726 30 100.0 36 .............................. AAGGACGGGGGTGTCGTCGAGTATCAGTGTGCTGCG 69660 30 100.0 36 .............................. GACCTGATCGAGAACAGCGGTATCGTACTCGTCGAG 69594 30 100.0 36 .............................. TCGGTGTACAATTCGATCCACCGAGAGAGCCAGATC 69528 30 100.0 36 .............................. TGCTTGATCGATGCGCTCGTGTTCTTCGAGTTGGTT 69462 30 100.0 36 .............................. GACGTCCGGTACACCACGCAGGGCACCGACTACCCG 69396 30 100.0 35 .............................. AGCCAGACCGACGTCGTCAAGCACGCGAACGACGC 69331 30 100.0 36 .............................. AGATCAACGGGAACCAGACGCTCAAGAATGTCTCCT 69265 30 100.0 37 .............................. CTGTTTTCCCGAACACTTTAGACCCCGCTTACCGACA 69198 30 100.0 37 .............................. ATCTCCGAATACCGCGAGCACCAGGTCGTCGCGGAGA 69131 30 100.0 35 .............................. GACGTGCTCTTCGTTGACCTGGAGGCGCAGTACCA 69066 30 100.0 35 .............................. GGTTCGACGCCACGAAGATGTCTTCCTCGAAGTGG 69001 30 100.0 36 .............................. GGACGGTGGTACGCGGACACGCACGATGGCGTGACG 68935 30 100.0 37 .............................. GCTCTTTGTACCCGTGGAAGAGTACTTCATTTGTACA 68868 30 100.0 35 .............................. GCCCTCGTAACTATCGAGTTACTGACTATCTTCGT 68803 30 100.0 36 .............................. TGCTTCGGCATGTCGTCGGGGTGAGCATCGGGGATG 68737 30 100.0 34 .............................. ATCCTGTAGCGACCCGAGCGAGGAATGCAGTCTC 68673 30 100.0 36 .............................. GCCCGGCTCACCTTGTCCTCGGCCCGAATGTGCTTG 68607 30 100.0 37 .............................. GACTCGACTCCGATACGCGCGACCGGCTCCGAGCGGA 68540 30 100.0 37 .............................. GACCATGTCTACCTGTCGGTGAGTGGCGGCAAGGACT 68473 30 100.0 36 .............................. AGCCAATCGTGGACCGAGTACGAAGACCGTTTCGCG 68407 30 100.0 34 .............................. CGCCGCGTCGCGGACGACCGACTCGTCGAGGACC 68343 30 100.0 35 .............................. GACCCGGACGACCTGGTGGCCCGGGACTTCGACTT 68278 30 100.0 36 .............................. GCCCGGCGCGCAGCGACGTACATCGGCGTCGGCACC 68212 30 100.0 35 .............................. GAGGGGCTCAGATATCGGGACCGTGTTTAGCGAGC 68147 30 100.0 35 .............................. GGCCTTTTGCGGGTAGAGTCGGTCGCGGCCGCCTT 68082 30 100.0 37 .............................. GGCCCCGAGCGACTAAGCCCTACCCCCGCTTAGTACA 68015 30 100.0 35 .............................. CAGATCCGGCGGGATCGACGCCGTCACACTCTCGG 67950 30 100.0 36 .............................. AACAGCTGGAAGGGCGCGACCGGGCCCGAAGACAAC 67884 30 100.0 35 .............................. AAACTGCAGACGCTCTTGTTAAGTAACGGGGTATT 67819 30 100.0 35 .............................. CACCGATCACGAGGACCGTCGGAGGGCGAGAACCA 67754 30 100.0 36 .............................. GTCCGCCAGTGCACGTACGACAGCCTTGAGGCGCAC 67688 30 100.0 36 .............................. AAGCTTTACTGGAGGGGGTAGAACGTTCTCGATGTG 67622 30 100.0 35 .............................. ACGCTCAACGAGGTCGTATTCCCGAAGCTTGTCGA 67557 30 100.0 36 .............................. CCGGTTGACACCACCAAAGCGGAGGTGCTCAAGGCC 67491 30 100.0 37 .............................. CTGCAACGCTCATCGTGCCGTCGCCCTGCCACCCGCC 67424 30 100.0 37 .............................. TCGTCGTCGAGCAGGAATACGACGATAGCACGACGAC 67357 30 100.0 36 .............................. GGTCACGTCGCGCGTCGTCGTCGCCGTCGCGAACTC 67291 30 100.0 35 .............................. GATCTGTGGGGAGTCCGCCCCCACTTGCTCGGCCA 67226 30 100.0 35 .............................. CTGTTGACGTGGGACGACATCTTCCTCGCGTCGGA 67161 30 100.0 34 .............................. GCGTAAGGAGTCGTCCTTGTGGTCAATCTGCCGG 67097 30 100.0 36 .............................. GTCGGCAGACTCGATGGCGAGGAGTACGAGGTCAGG 67031 30 100.0 35 .............................. CGCCGCCAAGAGCGTACGCAGGCCCCGCAGGACAT 66966 30 100.0 35 .............................. CCCTTCCAGGAGGCCGAGGCCGCTGCGGGCGGCAA 66901 30 100.0 35 .............................. TTCATCACGGGCAGCGACCAGTTCGACGTCGCGTG 66836 30 100.0 35 .............................. CACTCCCGAACCCGCCGGACGTGAGCGGATTTGTC 66771 30 100.0 35 .............................. GAGTGCTACTACGTCAACGACCTGTCCCTCGACAG 66706 30 100.0 36 .............................. GGTTGTTGAACGTCCGCTGGCTGAGGTCCGGAACCG 66640 30 100.0 36 .............................. ACCATCCACGGACCTTCCGGTGGGTCGAGAAGGACA 66574 30 100.0 37 .............................. GCTGATTGAGTGTGCTCATGGGCTCACCTCGTCGAGA 66507 30 100.0 33 .............................. ACGTCGGGAAAGCGGGTTTTGATCTCGTCCCGC 66444 30 100.0 35 .............................. AATCGGACTTCGCAGGGCTCATCTACACGCTTCGC 66379 30 100.0 35 .............................. GCGTCACTCATCGGTCGCGGTCCCCGGTTCCTGTT 66314 30 100.0 33 .............................. GATCGCGTCGGCCGTCGACGGGCCGATACCATG 66251 30 100.0 34 .............................. CATATTCACCTCCGTCGGTGCACGGTCAAGTTGC 66187 30 100.0 35 .............................. CGGTATCGCGGGCGGTATCGGTATCGGTACCGATT 66122 30 100.0 35 .............................. GTCGTGTCGCCTGCCGTGGCCGACTTCTTCTCGTC 66057 30 100.0 38 .............................. TCGGCCATGGGGTTGATTGTATCGTTGGATGAGCGAGC 65989 30 100.0 35 .............................. GGTCACCGTGATCTCCGTCGGCGCCTCGATCTCGG 65924 30 100.0 36 .............................. CTGTTCGGCGGCGTCGCGGATCCCGTGCTCGATCGC 65858 30 100.0 36 .............................. CTGCGGGTCGCCCGCCACCTCCAAAATATTTTGCTC 65792 30 100.0 35 .............................. GCCTTCTTGCTCGGGTAGTTCGACGGCCCGGCTTC 65727 30 100.0 34 .............................. GGTGACGGTGTCGACGCCGGACGAGGCGGTGGTG 65663 30 100.0 34 .............................. GGTGTACTGCCCCGAGTGCTCGTGGAGTGGTGCG 65599 30 100.0 35 .............................. TCGTCCTCGTCGTCCAGGCCGACCACCGCGAGGCG 65534 30 100.0 35 .............................. TCGTGAAGCGCCTGGGCCGTCTGCTGGACGTACTG 65469 30 100.0 36 .............................. GAGCCACGCCGTCGCCTCGACGCTCGCGCCGTAGTG 65403 30 100.0 33 .............................. ACCTTCAAGCTGAAGTTGCCGGCTGACAGGAAC 65340 30 100.0 35 .............................. GACTCGATCACGATCGTGTCCGCCGTGGGAGTCGT 65275 30 100.0 38 .............................. CGGGATCCGGGCAACGAGTACAGCTCGATCACGGTCGA 65207 30 100.0 36 .............................. GAGTAGCCACAGACGGGCGTACGTCCGCCCGTCGTC 65141 30 100.0 35 .............................. CGGTGGGTTGTGGTGTCACAATCCGAGATAACATC 65076 30 100.0 35 .............................. ACGAGATCCCGCACGTACGAGCTGATCGAGCTGTA 65011 30 100.0 37 .............................. ACGCTCGCGGCGGCGGCTGTCCCGGTCGCTTCAGGGC 64944 30 100.0 35 .............................. AGATGACCATGGGTACGTTAGACAACCGGGGTCAA 64879 30 100.0 35 .............................. TCGTCGAGGGCAAGGAGCCGGCCCAACTCGACCCG 64814 30 100.0 36 .............................. AAGCTGAAGCTGCCTGCCGACCGGGACCGCATGACG 64748 30 100.0 37 .............................. ATTACTGTCTGGGAGGCTGCGATGCTGATTATTGCGG 64681 30 100.0 35 .............................. GTAGCAGCGAAGCCGGCGGACGGCGTGATCGGCTT 64616 30 100.0 37 .............................. TCGGGTTTGAACACCTCGTCGTTGTTAGCCGGGACGA 64549 30 100.0 34 .............................. GATCTCTCCCGCTACCTCTCCCGCCACGTCGCCG 64485 30 100.0 35 .............................. CTCTTTGACTTCCTGGTGGGTCCGTCCTGTCTCGA 64420 30 100.0 36 .............................. TTCCGTCGGGCCTTCCGGATGAGCCGTTTGTTGACC 64354 30 100.0 35 .............................. AGACCACTACCGCCGACCTCGACGACGAGCTGGCC 64289 30 100.0 37 .............................. CTCGGACAGTGCGAGGTCTCGAAGTGGAGCGACACGC 64222 30 100.0 35 .............................. CGGACCGCCCGGTCACGGTCATGTAGAACGCCGTC 64157 30 100.0 35 .............................. ATGACCGCCTTCCCGCCCGAGGAGGTCGCCGACGT 64092 30 100.0 35 .............................. CTCGTATCCCCCGGCCAGTACGGGGCCATGCTGCC 64027 30 100.0 36 .............................. GAGTTTTCGGACCTCACGCTCACCATCAGCTGGGGG 63961 30 100.0 36 .............................. AAACGCTCGTAGAAGTGCGAGCGGGGCAGCTCGATG 63895 30 100.0 35 .............................. TACAACCGACAGTCGTCACAGAGCGGGGAACGCAT 63830 30 100.0 35 .............................. CACCGAGCTAAAACCGAAGCAAATCCTGTTCTCGA 63765 30 100.0 36 .............................. ACTACGTTCTCGACGTCGGCAACGCGGTCGGTAGCG 63699 30 96.7 0 .....................A........ | ========== ====== ====== ====== ============================== ============================================ ================== 97 30 100.0 36 GTTTCAGACGAACCTTTGAGGGATTGAAGC # Left flank : GGGACACCGGTAGCGCCGTTTCAGACGAACCTTTGAGGGATTGAAGCAGATTGGTCCCGAGGTCGACGAACGGCTCTGGAAGCGTTTCAGACGAACCTTTGAGGGATTGAAGCTATTTCCGGGGCGACCGAGACCGAATCGAGTACCTTGTTTCAGACGAACCTTTGAGGGATTGAAGCGATCATCTCGTCGGCGATCGCGTTCTCGTGAACCCAGGTTTCAGACGAACCTTTGAGGGATTGAAGCTCCTAGCCGGATACGTCACAGACAAGTTGGGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : ACTTATAAGGGAGTGGGTTGGGGCAGATTTGAACTGCCGGCCTCCTCCATGTCAAGGAGGTGTCATAACCGGACTAGACTACCAACCCACAGGGGCTTACTGACGCATCTCATCGTATCCGGGGGACGTAATTGAACCTTTCGTTTCGGTCGCCGACACGGGGGTGCGGTCGGCCGATTCTCCCGTCGGGTCGATCGATTTTTCGCGGACCGAAGCGGTTCCGACCGGTTTTACTGGCTCGGGGAGAGTCGTCGGGTATGGTCGATCTCGCCGCCCGCACCGAGAGGCTCGACGCGTACCTCGACGAGCGCGGGCTCGAAGCGGTCTGGTTCGCCAAGCCGAACGGGTTCGCGTGGCTCACCGGCGGCGACAACGTTGTCGACGCCGACGCCGACCGTGGGGTCGCCGCCGCCGGCTACGACGGCGAGCTCCGGGTGATCACCGACGACATCGAGGCGAACCGGCTCGCCGACGAGGAGCTCCCCGACGCCGTCGCCGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCTTTGAGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 71988-70250 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDJP01000013.1 Halorubrum amylolyticum strain ZC67 scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 71987 30 100.0 37 .............................. CCGTCTGATGGAGAGCAGCGGATCACGGACGCGCTGA 71920 30 100.0 34 .............................. CCGATCACGGACCCGTCGTTCAACCCCGAGGAAG 71856 30 100.0 37 .............................. GAGGCCAACGTCAGCGCCGGCGGGATCGAAAGCGCCG 71789 30 100.0 35 .............................. GCGATGAGCGAAGCGGTCTGGGCGAGCGACGGCGA 71724 30 100.0 36 .............................. TTGTGCGAGACGATGGCGATCCGGATCTGCGGGAAG 71658 30 100.0 35 .............................. ATCAGACGCCGGACGGAGTGGTTCTGCGAGAAGTG 71593 30 100.0 36 .............................. TCGTTGATCGGCCCGAGCGACGGCGGGGCGTCGACG 71527 30 100.0 34 .............................. GGCCGCGAGCTCGGCGAGCATCTCGACGAGCGGC 71463 30 100.0 37 .............................. CCCATCACCTCGACGTCGGGCTCGGCGAGGGCGGCGC 71396 30 100.0 35 .............................. TGGATGTCAGAGAGCTGTAACGGGAATCCGGACTC 71331 30 100.0 34 .............................. GACTTCGCGGGTCACGAACTCGTTGGCGACGCGG 71267 30 100.0 35 .............................. CTCCTTGGAGCACTCGTCCTTGGCGTCGTTGCCGG 71202 30 100.0 36 .............................. CGCGAGTCGGTGGTCGTCGCGATCCTTGCGGGCGTG 71136 30 100.0 35 .............................. AAGCACGTCTGTCACTCGTGTCGGAGTGTCACCTG 71071 30 100.0 37 .............................. TCGACGTACTGGTCGGCGCTGACGTGGTACCAAGCGG 71004 30 100.0 36 .............................. CGCGTGAGCATCCAGCCGTTGTACAGCAGCGTGCTG 70938 30 100.0 36 .............................. CATCATGTCGTCGACCTGGTCGTCCGGATAGATCCG 70872 30 100.0 37 .............................. CAGCGAACGAAGCCTCGAGCTTCGGGTGGTGCGCCGG 70805 30 100.0 34 .............................. AAGTTGGAGCGTGTCGGAGTCGTTGCCATACCGC 70741 30 100.0 34 .............................. CTCATCGGGATTGCGGGGCTGTTCGGCCTCGGGA 70677 30 100.0 37 .............................. GCGGTACTCGGCGGTCGCCGTGTTCACGACGAACACG 70610 30 100.0 37 .............................. TATCAAAAGATCGGTGCCCGAATAGACGATCGCGACG 70543 30 100.0 35 .............................. GATTGAGGTGTGCCCGTCGGGACACCGGTAGCGCC 70478 30 100.0 36 .............................. AGATTGGTCCCGAGGTCGACGAACGGCTCTGGAAGC 70412 30 100.0 36 .............................. TATTTCCGGGGCGACCGAGACCGAATCGAGTACCTT 70346 30 100.0 37 .............................. GATCATCTCGTCGGCGATCGCGTTCTCGTGAACCCAG 70279 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 100.0 36 GTTTCAGACGAACCTTTGAGGGATTGAAGC # Left flank : GACATTGGAACGAACGGTCGATCATCCGGATCTCAATCGAAAGGTAAGCTATCAGCATCTGTTACGGTTAGAAGCATACAAATTAAAGAAGGATCTTCTCGCCGGGGAGTCGTACGAGCCGTTCAAGCGGTGGTGGTGATGTACGTAGTTCTCGTATATGATATGGAAGCCGAGCGCACACAGAAGATGCTTCGTCTGTGCCGCAGATACTTGACTCACGTTCAGAATTCGGTACTAGAAGGAGAGATCTCAGAAGGCGATCTCACAGGATTACAAGAAAGTATCGATGATCTGCTTATTGCTGGGGAATCGGTCGTCATTTACGAAGTATCCTCTGAAATGCTTCTTGATCGGACGGTCTACGGTGACGACCCGAAAGCGAACGACCGATTTCTGTAGACTTCCGTCGACCCCCGGGGGCAGATCGGTTATTGGGGGTCGACAGGAAAGGATTGTTATGGATGGACGTGAGAGGGCCTATATGTCCGAAATTGGGCATG # Right flank : TCCTAGCCGGATACGTCACAGACAAGTTGGGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTCAGACGAACCTTTGAGGGATTGAAGCAGCGTGACGTGGGCTGCAGCGGCGGCTGTCGCGNNNNNNNNNNTGTTTCAGACGAACCTTTGAGGGATTGAAGCTCCTAGCCGGATACGTCACAGACAAGTTGGGAATTGTTTCAGACGAACCTTTGAGGGATTGAAGCCCTCGGCGTGCCGAACACCCTGATGATCGGCGTGCCGTTTCAGACGAACCTTTGAGGGATTGAAGCAGCGTGACGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCTTTGAGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //