Array 1 173526-177601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZOH010000001.1 Hydrogenophilus thermoluteolus strain thermoluteolus NODE_1_length_430236_cov_29.997373, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 173526 29 100.0 33 ............................. GCTGGTACCGTGCCGAGTGGTACGTATGCCGGC 173588 29 100.0 32 ............................. GCAATGACGCGATCATCGCCCACGACGCGCGA 173649 29 100.0 32 ............................. AGACGAGAGACTGCGTCTTGGTTTGAGTCAAG 173710 29 100.0 33 ............................. GCGGAAAGTTCGGCGGGAAAACTCTCCACCGAT 173772 29 100.0 32 ............................. TAGCGCTACGGTGCCAAGCCGCGCCCCTTTTC 173833 29 100.0 33 ............................. AATTTTGAGATGACGATACCAGGTACGACGAGA 173895 29 100.0 33 ............................. ATCAGTAGGATATTGACCATCAGGAGATTGGAA 173957 29 100.0 33 ............................. GTACACCCAGTCAAGCGTTTTCCCTTGTGTACC 174019 29 100.0 32 ............................. TTCGCCAACCCGATCACCGACATCTGCTGGTC 174080 29 100.0 32 ............................. GCGTGCAGATGCCGCAGACCGAAGACGCCGAA 174141 29 100.0 33 ............................. AACGAGGTCGTTCGGCGGCTTCGTGAAAATGGA 174203 29 100.0 32 ............................. ACCGCGCGCTGTTTCCCATCCCAAATTCTCAA 174264 29 100.0 33 ............................. TGCGGCAACAATCGTGCCGCCAAGCGCAAGGAC 174326 29 100.0 32 ............................. ACCCCAGAATCAAAAAGGTCAATCACAAAATC 174387 29 100.0 32 ............................. CAGACAGATTGACCGTAGCCGACCGCCCGGTC 174448 29 100.0 33 ............................. TTTTGAACCTGGTTTTCCTTGCGGTTTTCATGG 174510 29 100.0 32 ............................. GACCGGCTGGAGTTGAGCGTCTATGACTGGGG 174571 29 100.0 32 ............................. GTCATGCACCTCAATAGTATGGGGCGGCTGCC 174632 29 100.0 32 ............................. AGCTTTGAGCGCGCGTTCAGGAAGATAGAAGC 174693 29 100.0 32 ............................. GCTCCTTCTGCCCCCTACAGCGTGAACGACAC 174754 29 100.0 32 ............................. CGGCGCGGCGATGCGCTCCCGCTATATAGCAG 174815 29 100.0 32 ............................. TCCTCCATCGGCTCTAGGTGCGCGGTGTGGGC 174876 29 100.0 32 ............................. ACCTACTGGATGATCTCGGATCAACCCGTATC 174937 29 100.0 32 ............................. AAGAGCTACGTCACGCAGTCCCGGTGGGTTCA 174998 29 96.6 32 ............................A TCGACGACCGGGTCATAGTCCAACCGTGCAGC 175059 29 100.0 32 ............................. TTTTCGGCGCACGCGGTCGGCGTCATCGTTCC 175120 29 100.0 32 ............................. AATACCCTGCGTGCGCCGACCCGCAATTTATC 175181 29 100.0 32 ............................. GCCGGGTGGTCGCAGGCGAAGATCGCCGAACA 175242 29 100.0 32 ............................. CCTTGGTACGCTTGGGAAAACGGGCGATTTCG 175303 29 100.0 32 ............................. CTGACTGTCGAGGTTTCATCGTACCCTGGCGC 175364 29 100.0 32 ............................. CGGGAGCGGGAGCGCGAGCAGTAGCAGCGGGA 175425 29 100.0 32 ............................. ACCGACGTGCGGGTCGAGGTCTGGATGGACAA 175486 29 100.0 32 ............................. ACATGATCAGCGGTTCTACTAGAAATCCCCGC 175547 29 100.0 33 ............................. GTGCGGTACGGCAAATTATGTTTGATGCACCGT 175609 29 100.0 32 ............................. TCTTGGTCGTCCTTGAGGTCGGACGGCTTGGG 175670 29 100.0 33 ............................. CAAACCACCAGCGCGGCGGTGTCGGCCATCGCC 175732 29 100.0 32 ............................. AACGATTTGTCCGAGGTCTATTCGCTGCTGTC 175793 29 100.0 32 ............................. ACTTCTTCACGGAACCGCTCGAAGTCTTTCGC 175854 29 100.0 32 ............................. TGCGGGTGCGCGGATCCATCTTTCCCTTTGGT 175915 29 100.0 32 ............................. GTGCCGACTTCGTCAATACCGCGATTCGCGCC 175976 29 100.0 32 ............................. TTCAGCGAAGGAGAACAGTAATGGCATCGGTC 176037 29 100.0 33 ............................. TATTTGCCGCTGGCCGTGCGAATCAGACGAACC 176099 29 100.0 32 ............................. TTTCAGCGATATTGACGATACGCCGTGAAACT 176160 29 100.0 32 ............................. TTTTCGAGCTGATGTCGTTGCTGCGGGAGAAA 176221 29 100.0 34 ............................. CGGTGATCCGTCATGGGACGACAACCCTGTAGCG 176284 29 100.0 32 ............................. AATCCCGTTTTTCTCGTCTACCAGGATCGGGT 176345 29 100.0 33 ............................. CCCGATGCCGCCAGCGGAATGCCCTTGGCCCAC 176407 29 100.0 32 ............................. GCTGGGGCGATCGACACGCGCCAGTGGTCCCG 176468 29 100.0 32 ............................. GCGGTTGATTTTACCGGTTTGCTCTGGCGTCA 176529 29 100.0 32 ............................. TCATTACGCGCAATTCGCGCGACATTGGGACA 176590 29 100.0 32 ............................. CATCCGAAGCGCTTGGGGAATTGCTGGACGAT 176651 29 100.0 33 ............................. ATTTGCGAGCCGGTCGACGCCGTCTACACCTAC 176713 29 100.0 32 ............................. AACAGTTCCATCGCCTCCCACCGCGCGTGTGC 176774 29 100.0 33 ............................. CCGGAGATGCTCATCGACGCGCCGTACCCAGAC 176836 29 100.0 32 ............................. TGCTCGCTCGCGCGACGCTAGCCCCGGGCGCG 176897 29 100.0 33 ............................. GCGGATCTGGTCGATGATCGTCGCACCAGACAC 176959 29 100.0 33 ............................. GCCATCGAGCCGGATCGGGGCAGGCCGCTGCGC 177021 29 100.0 33 ............................. GTGAACCCCTACGCGGCGGTATTGCCGGCGCCG 177083 29 100.0 32 ............................. AAAAAGCGGGCCGCAATCGCAGGTGAGATTGC 177144 29 100.0 33 ............................. TCACTGTTCGTCGCGGTACTTTTGGGCGCCGGT 177206 29 100.0 32 ............................. GATGCCGTCGAGACGAGGCGGCAAATGCGCCG 177267 29 100.0 33 ............................. TTTCAGCCATTGCTGGTGTCCTCTCGCGAAAGG 177329 29 100.0 32 ............................. GTGTAGCTTTGCGCGGCAACATCCCCAGAATC 177390 29 100.0 32 ............................. TGGTGGACGCATTTAGGATCTGATGATTTAGT 177451 29 100.0 32 ............................. GCGATGACACGCTCGTCGCGCACGACGCGCGA 177512 29 100.0 32 ............................. TCAAGCGACGAGACGACGCAGTTGATCCCAAC 177573 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 67 29 99.9 32 GCGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : GCCAAAGCCACCAAAGGAGTCGGTACCCCCCGCCATTCCGGAACAGGAGAAACTGGGTGATGTTGGTCATCGTGGTTGAAAACGCGCCTCCCCGCCTGCGCGGCCGTCTTGCGGTGTGGCTGGTGGAAGTGCGCGCCGGCGTCTATGTCGGCAATCTCTCCCGGCGGGTACGGGAGATGCTGTGGCAGCAGATCGAGGCAGGGATCGAAGACGGCAACGCCGTGATGGTTTGGAGCACCAATACGGAATCAGGCTTCGACTTTCTCACTCTCGGCAAGAATCGCCGCATTCCCATCGAACTGGATGGCCTGAAACTGGTATCCTTCCTACCGGAACCAAATGAGGGTAAGAAGGAGGGTTGGTAAACGTGCTCTTTGACAATCCGAAACAAGAAACTTTCCCTAAAAATCAAAAGTTTACTAAATTTCTTTTTAGCCCATTGTGCTGGTACGCTTTTCAAGCTACCAAAACACCATAAAATTCATAGGGTTACATGAAGT # Right flank : GTAACACGAACACGAGGCAACCGGCGGTGATTAGCGTTCCTGTCAACACCGACCACAATTGACCGCTTTTCACCGATTCGAGATGTCCGGTTTTCAACGGAATGCTGCTTGGCTGCCCAGGCCGTAGGTGGTGGGCTACCTGTCTCCTTCTGGTTGGGGTAGGTTGGCCGCTTTGGTCAGGAGCCCGGCTTTGCGCTTTTCCTTGAGCCGGAAGCTCTCGCCCTTGATGTTGAGGGTGGTGGCATGATGCAGCAGCCGGTCGAGAATGGCCGTGGCCACCACTTGGTCGGCAAAGATCTCGCCCCAGTCGGCAAACCCTTTGTTCGAGGTGAGAATGATCGAGCCTTTTTCGTAGCGTCGGGCCACCAATCGAAAGAAAAGGCTCGCTTCCTGTCGTTCAAGCGGCAGGTAGCCGATCTCATCGACGATCAGCACCTTGGGGTAGGTAAGCTGCTGCAGTTGCCGCTCCAGGCGTTTCTCCTGCTGGGCACGCTTGAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4285-1607 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZOH010000025.1 Hydrogenophilus thermoluteolus strain thermoluteolus NODE_25_length_4531_cov_43.231153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 4284 36 94.4 37 ..................................TT TGTAAAAGCAAATGAAGTTGTCAAATTTTTCATAGTT 4211 36 100.0 35 .................................... TTTCTCCTTCGTTGAGGTCTTGACGCCAAATAGAT 4140 36 100.0 36 .................................... AAAGTAGGCAAGATCGAACCACAACCCGAGATCATC 4068 36 100.0 36 .................................... CCCGTCTGAGCCGGTAAACGTGGTGCCTGCTTTAGT 3996 36 100.0 35 .................................... CGTGGCGACATTGATCTTGTTGTATTTGTAGGCGA 3925 36 100.0 35 .................................... ACATCTTCGCTGAGGTCTTTTTTATCTACGATGTC 3854 36 100.0 34 .................................... ACGCCAATATCGTTGATTTTTGGCAGCACACGCT 3784 36 100.0 36 .................................... TTTTTTACAGAATGGGCAATTGGGATCGGAAAAGAG 3712 36 100.0 34 .................................... GCCCGAAAGATCGTTGAAGGCACGCGCCTGTTGG 3642 36 100.0 35 .................................... CGCGCTTCAGGGTGTTGATTGCCTTGCGGTTGGTA 3571 36 100.0 35 .................................... TCATGAAAGAGCGAATAATAATCGGCAATGATGCC 3500 36 100.0 36 .................................... TCATGGTTTGCTCCGTGTTATTGGCTTCACCAGTAG 3428 36 100.0 34 .................................... GGCGAAAAATCACATGATTCTAGGCGCAGCATCG 3358 36 100.0 37 .................................... GCCGAGGATGGTCTCCACAAGTGCAACGTGATGGTCG 3285 36 100.0 35 .................................... TTTCTGTGCAGCATCAATTTTGCGCGCAATCACGC 3214 36 100.0 37 .................................... CCGGCGCTTGTGGTTTCGGTTCAGCAAACGCTGCTTC 3141 36 100.0 34 .................................... GAAGTAATGTCGCGCAAGCAGTTTGTTACGTGCA 3071 36 100.0 34 .................................... CATTTCAGTTAGTTGGTTTGTTGTGTGGTGCTCA 3001 36 100.0 35 .................................... CCAACCCCTACCGTGCACATACCAGGGCACGCCGT 2930 36 100.0 35 .................................... CGCAGTTCTGCTCCGGTTTCAGGGCACTTTACCAC 2859 36 100.0 36 .................................... CAGTTTTTGTGCAATAATTTCGCGATCAAGCCCGAT 2787 36 100.0 37 .................................... GAAAATAGGGAAAACGATATTATTTATAAACTACAGC 2714 36 100.0 34 .................................... CCCACCAAGCATCCGAATTGCTGTTGCTGCATCC 2644 36 100.0 35 .................................... GCGATCGATTGTCAAAGATCGCCAATCGATCGTTA 2573 36 100.0 37 .................................... CTGGTGGATGAGTGACGACTTGCCGATGCCCGGCGAC 2500 36 100.0 37 .................................... ATAGATCAGATCGTCGTAGGTATAGGCGGTGCAGATC 2427 36 100.0 38 .................................... CAAGGTGCTGCGCTGGAAAGCGCAGGAAGGACTGCGCC 2353 36 100.0 36 .................................... TCAATGTCAGTCCAAGTGCCATTCCAGCTCATTTCT 2281 36 100.0 36 .................................... TTTTCGGAAACGGATTTAACTCGTTCCAGAATTTAC 2209 36 100.0 36 .................................... GCTCCATACCGATGACTTGCGCATAGGTACGCACGG 2137 36 100.0 35 .................................... AGGACGTGGGTGAACCTGTTGAGAAGTGGGGTGGA 2066 36 100.0 34 .................................... AGCTTTTGGGCGATCACTTCGCGATCAAGCCCGA 1996 36 100.0 35 .................................... GGTAGTGTCCTAATTCTAGATGCTTAAGATATTCA 1925 36 100.0 33 .................................... CCGTTGTTTGGTATATTTTCTGCACGAGGTGGT 1856 36 100.0 37 .................................... ATAGCTATTGATGCCGAAAGTTGGCATTTGGATTACT 1783 36 100.0 35 .................................... TAAAGAACGAACCCCAGTCCCGGACAGTCGGCAGC 1712 36 100.0 34 .................................... GTTTCGTGCCCGCTGTTCCCAACGGAACGAAACT 1642 36 97.2 0 .............................C...... | ========== ====== ====== ====== ==================================== ====================================== ================== 38 36 99.8 35 GTTGGAATCATGCCCTGATTGAGAAGGGATTAAGAC # Left flank : ATTGGTTTCGACACGCATCGCCATGATGGGCATACTCCTTTCTCGAAGTCATGGCGTCAGACCGAGCGCCGCGCGCTTCCTGCCATAGGCGCTAAACGGAATTTACAGAAAGGATGGTACACAACCTTTGGTTTATCCAATGTCGCACAACCAACTGTACAAAACACACGTAGTCAAAGTGGTTAATTTTTTGGGAACAGTGGTTGTAACCCATTGTTCCAAAAAGCAGAAAAATGTGGGTGCTGT # Right flank : AGTGGCAAGCGCAATCACCTCTGCGTACGTCGGGTCGGATGGAATTATGCTTGTCAGCACCGATGGTAAATGTCCGCAAAACACCGGTTTGAGATGTCCTCCCGACAAAGCTGGTGCATCCTTGTGTTGTGTCAAGAAGCAAGGAGAGCGCCATGCTCAACCGAGAGGACTGGCTCATGATACGCGAAATGCGAGAAAAGGGGTGTTATCTCCGTGAGATTGCCGAAGAAGTGGGATGCTCGGAGCGAACCGTGCGTCGGGCGCTGCTGCGCGGTGGGCCGCCGCCGCGACGGCGAAGCGGGATTCGGTCCAGCAAACTCGACCCTTACAAGGCGCAAGTGGATCGGCTGCTTGCCGAAGGGGTCTGGAACGCCACGGTGATCTTTGCCGAGATCCAGGCGATGGGCTACCGCGGCGGGATCAGTATTCTGCGTGACTACATTCGACCCAAGCGAGCGCTGAGAAAGCCCAAGGGCACGGTGCGCTTTGAGACCGCGCCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAATCATGCCCTGATTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //