Array 1 27606-27311 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QQJW01000004.1 Haemophilus haemolyticus strain M26161 M26161_HUY4190A151_cleaned_ctg_3565, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     27605	    32	 100.0	    35	................................	TTAAAGACAGGATGCCCTGCTTCTTTTTTAAAGAA	
     27538	    32	  96.9	    33	...........T....................	CAAGCAGAATTCATCTTTTTTAATTCGTTTGAC  	
     27473	    32	  96.9	    33	..............A.................	ATTTCTTCTGTTGGATTATCTATATATTTAATA  	
     27408	    32	  93.8	    34	.......T.....T..................	GTCACGACATCATATAGCAACCCAAGCTGGATTA 	
     27342	    32	  84.4	     0	..T.......T..A........A........T	|                                  	
==========	======	======	======	================================	===================================	==================
         5	    32	  94.4	    34	GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC	                                   	       

# Left flank :   TCGGCGTATTTGGGCTGCTTTTGAGCGAAAAAAGCGGCTTTTCTTTTGACGACCCAAACGGGCAAGCGCGATTGCGCCGCATAGCAAAACATTGCTTAGATTACGGCGTGCGGGCGTAATATTCAGTATTTGAATGTGATGTCACGCCTGACCAGTGGGTCATGTTGAAAAACAAACTGTTGGAAACCTACGACCCGACGTGTGATAGTCTGCGTTTTTATCATTTAGGCAGCAAATGGCGTAATAAAGTGGAACATCATGGGGCAAAACCAGCAATAGATGTATTTAAAGACGTACTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGAGATCTTTATTTTCTTTAACAATTTGGATGAGTTAATCTATTTGTATAACGGCAATGTGGCCGTTATACTGACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTATTTAAGACACTGATTTTTATTGTTTTTTTTATGTAGGGA
# Right flank :  CCTCACGTATTAAGCCAAGGGCAACCCTTACAACGCAGCTGTTTCAGCCAGCATATGTTAAAGTAGTTCTGTTTTTCATTATTTAAATGTTATTTTTTTGTTAAATATATTTTGCTTAAGTATAATGCTCAACATTATTCCTCACGGAAGAGAATCCGTAGAATAATGAGATTAATCGTAAATATAAGGAACAAAAATGGATTTCAATCGAATTATCACTCACATGAATGATCATCACCAAGATGATATGGCTGCCCTTTGTAAAAAATTTGGGGGCGTAAATGAAATCACGGATGTGAGATTAGTTAATGTAGATTTTGGTGGTTTAGATTTTAAATATAATGATGGAAAAACATTACGCGTGGAATTTCCACAACAAGCTGATGAAGGTTCAATTAAGCAAGCAATAATCAATCTTTGTGTAGAAAATAAACCAGTTGCAAATTACGATCGTATCAAAGCTAAAATTGATGAATTTCGTCAAGAATTTAAAAGCTGTG

# Questionable array : NO	 Score: 3.79
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.40,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.55   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//