Array 1 3858235-3857607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKAKC010000001.1 Escherichia sp. Marseille-Q3837, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3858234 28 100.0 32 ............................ AGCTGCGTGGAGTAAGGCCTGTTATTGCGTGT 3858174 28 100.0 32 ............................ TGCACACACTGAACGGCGGGATATACAACCTC 3858114 28 100.0 32 ............................ AAACGGACACCCGCCGTAATCCGGGATGGAGT 3858054 28 100.0 32 ............................ GTTCTGGATAGGCAAGCTATCCTGAATATATT 3857994 28 100.0 33 ............................ ATCTTCGGTTATACGTTCTTTCACTGCCGTGCA 3857933 28 100.0 32 ............................ TCACTAAATCCCTGTTAGACGCGTTATTTGAT 3857873 28 100.0 32 ............................ TGGGTAAACCCCGCATGACCCGCGCAGACAAA 3857813 28 100.0 32 ............................ TTGACGATACTAGAGGGATTTCTTACAGGGAA 3857753 28 96.4 32 ..............T............. CGGGGGTCTCTGGCATACGCTGCTAGAGAATC 3857693 28 100.0 32 ............................ GCCGAAGCCCGGCGTAGCCGGTACGGATCATC 3857633 27 89.3 0 ...........C........-...T... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCTGGGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGTTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCATGCGGTTCATCCGTCCAGGATTGTGACTGTACATGCTCTGGGCAAGTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCTAATCGACCCTTTTTTCAGGGTGAGATGTAACTCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ATCCATAACCCAATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3867906-3867397 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKAKC010000001.1 Escherichia sp. Marseille-Q3837, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3867905 28 100.0 32 ............................ TGGTGCATGGCATCTTTGTCTGTGATTCGTTC 3867845 28 100.0 32 ............................ ACACTGGATCAGGAACAACTTGCAGGGTTAGG 3867785 28 100.0 32 ............................ AGCCTCGCATGTTCCGAAACTCCTGTTCGATA 3867725 28 100.0 32 ............................ GTCAAGCGTTGACCGCCATCAAAAATGGTACA 3867665 28 100.0 32 ............................ TACATCTGACGCGACAAAACCAGCACCATTAA 3867605 28 100.0 32 ............................ GGTTCCGGTAGCTGCACCGATTGCGCCTGCAC 3867545 28 100.0 32 ............................ GCTCGGTACCTCTACCAACCCATCCACATATA 3867485 28 100.0 32 ............................ AGACACTCTCTGGTGGAGAGAAGCGGAAGATT 3867425 28 89.3 0 ....................T...C..T | C [3867401] ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAGCTGGATCAAAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCACGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGCCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTTCTGTAACTTATTGATAATTAACGCTGCTGGAAGGCAAGGATAAAAAAGGGTGGCAGCAGGGAAATTGGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGTAATGGTAGACGTTTGGTCATATCATGATGCTCTCAACGTCAAAACATTAGCCTTAGCACACAATAACAATTGTAATAATTGCGACAGAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTAAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACTATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //