Array 1 355461-357679 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYS01000004.1 Haloferax sp. Atlit-47N P_contig000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 355461 30 100.0 36 .............................. AGCGCCGATTGGACGGTGGTCGATGATGCCTAACCC 355527 30 100.0 39 .............................. GTCGCCCGTGCGATGTAGACGTCGGCCGTCTCACCAGCC 355596 30 100.0 35 .............................. ATGGTCAACCTCCTCTGCAACGGGCTCATGACCGC 355661 30 100.0 38 .............................. CCCTGTTACAGTTGACTTTGAAGTTCGCAAGACGCCCC 355729 30 100.0 33 .............................. ATATGCCAGAACTCGCCGTAGTTGGCGAAGATA 355792 30 100.0 36 .............................. AACGCTGTCTTGCGACGGCAAGGCAATCCAACTAGA 355858 30 100.0 36 .............................. GGAGGTTGTTGAGAATCCCGTCAATGGCCTCCATTG 355924 30 100.0 39 .............................. CCCGACTTGCTTTAAGTCCTCTGTCCTCGTGATTGCGGT 355993 30 100.0 35 .............................. AAGTGCCTACGGCGGGAGTGGTCTCGACGACAACG 356058 30 100.0 37 .............................. TGCCGACGATATCGTTTGTCGCAAAATCAAACGTCGC 356125 30 100.0 37 .............................. AACGCGATAGTCTCCATAATTAAGCGTGTTGGGGCTT 356192 30 100.0 35 .............................. TCGGAGACCCGCGCCGTCAGCACCGCCACACTGGA 356257 30 100.0 37 .............................. CGGTTGCCGTGACGGTTGTCGCTTGGAGATTCGTCGG 356324 30 100.0 36 .............................. GCCTGTACTGACCGATTGGGACTCGACGCGGTTGGT 356390 30 100.0 39 .............................. TCGCCCGCGGACGCAATCGACGCCGGAATCGGTATGATT 356459 30 100.0 37 .............................. TGTTCGCCGTCATCCTCGCTGACGAAGTCCTCGGCGC 356526 30 100.0 34 .............................. CGTCTGTGGGAGGACCAGCACGTGTCGCTCACGA 356590 30 100.0 38 .............................. CCTGATATCTCCCGGTCGGAGTTCCGCCGGCTCGACGA 356658 30 100.0 35 .............................. ATCTGAACGTGGAGGACGAGTCGTGACCGAAGCCG 356723 30 100.0 35 .............................. GGCGTCCCGGACACACGGGGGTACAGAGACTAATG 356788 30 100.0 35 .............................. GGGTTCATTGGTCTGGAAAACGGTGGGTGGGTGGG 356853 30 100.0 36 .............................. TGTCGTTCGTGCGCGTGCACGGGAACGGGGCCAACT 356919 30 100.0 39 .............................. TTGTATCGGTCGCGCCCCTGCAAAACGCCGCGCCACCCG 356988 30 100.0 38 .............................. TTCTTTGTGATTGTTGGCCGCATCGCGGAATCTATCGC 357056 30 100.0 34 .............................. CCAAACGACACGGATTATGGAATATTCCATAGTG 357120 30 100.0 37 .............................. TCAACTCCATAGCCGTCCCACTCAATGCCGTCTGCCT 357187 30 100.0 36 .............................. GAGCACCGAGATAGACGCCGACGTGGACAATCCCGA 357253 30 100.0 36 .............................. CGCCCGACCTTGGCGGAAGTGAAACACTTGGGCATC 357319 30 100.0 37 .............................. GGACCAGAACATCAACGTGAGTCCGCGTCAGCGTGGC 357386 30 100.0 36 .............................. ATACCCACCCACGTCCATCCCAGTGATGAACCGTGA 357452 30 100.0 36 .............................. AACGGCTTCGACTTGGACTTCGCTGGCGCGCAGGTC 357518 30 100.0 33 .............................. CAGCAGCGTCGTTCGGTGGTCCTCCTTGCGATT 357581 30 100.0 39 .............................. GCCCAACGTTGCTTGCTCCGTCTCGGTCGTGCTCTGAGA 357650 30 76.7 0 ...............G.A.C.AAG.....A | ========== ====== ====== ====== ============================== ======================================= ================== 34 30 99.3 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CCCGCTCGTCGGTGAGTCGCTCACCGACTTCCGCGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTCGACTAGCGCTCTCGACGCTCCCCCTCGAATTTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAACCGACCGCGTGACGACTGCCCGAGTGGTTCTCGACACCGCCAGTGACGACCCGACGTTTTCGTCGACCCCCCGGGGGTTGCGGGTGAATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACGTCATTGTACCCGTGAATTCGGGATG # Right flank : AATCAGGAGACGGCATTGCGATGCCCGTATTAGTCAATCACGTACTGAAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGAGGGACGGGTCACCACGGCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 176053-176610 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYS01000005.1 Haloferax sp. Atlit-47N P_contig000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 176053 30 100.0 36 .............................. GACACATGAGCTACCGACACGCGACTGACCGCGTCG 176119 30 100.0 36 .............................. CCCAACGCGACCGACGCAAACGGCGTCCTCCCTGGC 176185 30 100.0 36 .............................. CTCCTGGTGGCGCTGCTCGCGCTCGTCGTCGAGGCG 176251 30 100.0 37 .............................. TTAGTCGTCGAACCTCCCCTAAGGGGTCTGAAGACGA 176318 30 100.0 37 .............................. CGCATCGAGTCCGCCGCCGTTGGCGTCGACGACTCGC 176385 30 100.0 35 .............................. CACACGTGATAGGAGCCGCTCGAGGACTCGAACAC 176450 30 100.0 34 .............................. ATCACGCGCTTGATGACCCACCCAGTCTTGTCGT 176514 30 100.0 37 .............................. TGGGTCGAACTCGCAAATGACGGCTCCACGTTCACGC 176581 30 90.0 0 ...............C..A.C......... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.9 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGCGACGTCCACACCTACGGCGGCCGTTCCACCATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTGCTCGACTCGGCGTGCGAGCGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAGCGCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAGCTCTGGGTCCGCAAATACATCGACCGCGAAGGTCGCGGCGTCGAGGAAGGTCCCGTCGGTGCGGCGGAAGCCGAAGACGCGCCGCAACCGGCCGACTGAGTTACTCGAACCACTCGATGGACTGTCCAGTCGTGTGGAACTGCGATTCGTTTCCGTCGACCCCCCGGGGAAGCGAGGACTACTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTACGCGACGCTACGCCCGTGATTTCGGGACG # Right flank : CAGAGAAACCACCCAACGAAAACAATCACCCGAACAGTCAATCCTGGTTTCAATTATTGCTGACCCGTCAAACTACGGGCATAATTTTATGTCGAGGAGCAAACAATCACGAGTACAACAATGAGTAGAGAAGGAGGTATCGGATAACGTGCGAATCATGGCACACTTATCAGCGCGTTCCGATGCTGCGTATCAGAACGATTACCATCACAAGATTCGCGGGCGAATCTGGAACGCGCTCGATGGGACGGCCTACGGAGAACGACACGATTCCGGCGAGCCGCCGGGGTTCGCTTACTCGAATCCGTTTCCGCCTCGAGATATGCGGGAAGGTGACGACCGGAAGTTACTGGTCGCGTCGCCCGACGAGGAACTACTCGCAAACGTGGCGGCGAATCTGCTCGACGACCGAGAGTTCAACGTCGGTGAGATGCCGTTTCACGTCGACGAGGTAACATCCCTCGAACCCGACGTGGGCGAGCCAGGGACCAGGGGGACGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 186148-188349 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYS01000005.1 Haloferax sp. Atlit-47N P_contig000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 186148 30 100.0 38 .............................. GTTGATGACGACAGCGCAGGACTTGGACTCGACTTCAG 186216 30 100.0 38 .............................. TCACTGCTCATCACCCAACTCAAGAGCCATGACTAACG 186284 30 100.0 39 .............................. GAGATACGGTTGTGAGTCTGGCAGTTCGTCGGCGTAGTC 186353 30 100.0 37 .............................. ACACACCATTGATTGGTGAGTAAAGTATAAGTAACTG 186420 30 100.0 37 .............................. GAAGTTGGGGCTGAACTCTGGCGATGCGAACTCCGGC 186487 30 100.0 35 .............................. CGAGTTGTGCCTCTCCCGGACGGGGTTTCGCAGCG 186552 30 100.0 37 .............................. GGTGGTGGAACATTCGGCGTCTCAGACAAATTACTGC 186619 30 100.0 38 .............................. ACTGACTGGGTCGGCGTCGAGGTCGTCGACGCTCATGC 186687 30 100.0 37 .............................. CGACGACTCTCGCCAAACGTCGAGCACTCGCGGCGCT 186754 30 100.0 37 .............................. TTGTGGAAGACTGTCCACATCCCGGTCTGTGCCGAGG 186821 30 100.0 35 .............................. TTCTCGTGTGTCGAACCCGTCGACGAACGACGCCA 186886 30 100.0 37 .............................. GCATACGGTCGACCCGCACCTCAGCAACGGCTTGTTT 186953 30 100.0 35 .............................. CCACAGACGCCGCTGGCGGGCGGTGCTGGCGGGGA 187018 30 100.0 35 .............................. GGTCGCGCTCGTAGCAAGAGTCACCCGCATAGGGG 187083 30 100.0 34 .............................. TCCATTCGATATTTCAAATCCGTCCCCTCCCCCT 187147 30 100.0 34 .............................. CGCCAAATCACATCCGCTCGTCTCTCCATCACGT 187211 30 100.0 36 .............................. GCATCCGAGAGACGATTGCGTCATTTAATATCAACG 187277 30 100.0 38 .............................. GACCGGCGCGTCGCAGGTCGGACACGAGACGGAGCCGG 187345 30 100.0 35 .............................. GTGTACGCGGGAGCTCTCGAGCGCGTCGTAAGCGT 187410 30 100.0 34 .............................. ATCGACGAACACCCCCGTCTGCCGCGACGACCTC 187474 30 100.0 36 .............................. GACCTGTTCGGTGACGACCGCGACGTCGTCGACGTC 187540 30 100.0 34 .............................. GTCGGGTCAAGGTCCCCAGCCGAATACGACGCAT 187604 30 100.0 35 .............................. GCCGGGGTCAGAACCCAGTACGAACTCACCGGCGT 187669 30 100.0 37 .............................. GTCGAACCAGTAGGCCGTGTTGTCGACGAGTTCGTGA 187736 30 100.0 35 .............................. GGGAGTTTCGGGAGTCCTACCTCGAAATTCCACGC 187801 30 100.0 35 .............................. GGGGTCGGCCTCACGCCGGAGGGCGGCACGGACTT 187866 30 100.0 35 .............................. TGTTAAGATTGAGGACGGGTGGTACCTGAGATGTA 187931 30 100.0 37 .............................. CTATCGTCGAGGTCGGTTACGTCTGCCGAGTTTGCAC 187998 30 100.0 37 .............................. ACGACTGTTTCCTGTGCGCCGAATGCCGGTTTCAGGG 188065 30 100.0 35 .............................. GCGTGTGTAAGCACCCAAATCCAGACGCGGCGCGG 188130 26 86.7 35 ...............----........... GCTCACCTCGGCTCTGCCGTCGACGAGGACGACGA 188191 30 100.0 35 .............................. TGCATCACCGCGACGTCGCCGCCGCCCTCGTAGGC 188256 30 100.0 34 .............................. GGCACCTACGACCGCCGCTACAACGACGACCCGC 188320 30 83.3 0 .......G.......G......A..A..T. | ========== ====== ====== ====== ============================== ======================================= ================== 34 30 99.1 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CGCTCGAACGAACCGTCGAGCATCCGAAGCTCAACCGCAAAGTGAGCTATCAGTACCTGATGCGGCTCGAAGCGTACAAACTCAAAAAGCATCTGCTGACCGGAGAGGAGTACGAGCCCTTCGAACGGTGGTGGTGAAATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGCACAAAGCGCTCAAGCTTGGGCGACGCTATCTGACGCACGTTCAGAACTCCGTCCTCGAAGGCGAAATTTCAGAGGGTGATTTAGCGACGCTTCGAAACGAGGTCGAAGACCTGTTGAAGCCGGGTGAGTCAACGATTATCTACGAACTGTCTTCTGACACACTTCTCAACCGCTCGGTCTACGGCGACGACCCGACCGACGAGAAACGCTTCCTCTGAGTTTCCGTCGACCCCCCGGTCGGCTCGGGTTACTGACGGTCGACGGAACTTCTTTATCGTAGTCACCCCTCAGAGAGTCTGTGTCCTCGATATCGGACATG # Right flank : CGAAAACTCGTCGGGACGAAACCACGCGAAAGAAACAGAACCCGGCGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGAGCGGTTCGTCCGACCCATGCGGACGGCTTCCGCGGGGTCGGAGACGAGTCGGGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGCGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATGCTGCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATTGGAAGCCCCTCGGCGTAAGTCGGGAGGACGAACACGGTTCCGCGGCTGATGAGGTCGCGTTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACCACGAAGTCGAGGCCGGGCGTGGATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //