Array 1 205513-203957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCKD010000006.1 Haloechinothrix aidingensis strain YIM 98757 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 205512 29 100.0 32 ............................. CCGTCTGGGTCAGGATGCGCGTACCGACCCGC 205451 29 100.0 32 ............................. CGAGCGTAGCCCCTTACAGCCGGGGCAGCGAC 205390 29 100.0 32 ............................. CAGGGGCAGCATGCGCTTGTGTTGTCGGGGTG 205329 29 100.0 32 ............................. TAGGTGGGAGTGCAATTGCGGAGAAGAGTTCC 205268 29 100.0 33 ............................. CGCCGCGAGCGGCTAGAAAAGCAGCAGCAGCGG 205206 29 100.0 32 ............................. CCGTTCTCGCCGAAGTCCTCGCGGCGCCTGTC 205145 29 100.0 32 ............................. CTGGCGTACGACTCCGGGTGCTACGAGGATTA 205084 29 100.0 32 ............................. CGATCATCACGTTACTTCCGCTGCTCATAGAG 205023 29 100.0 32 ............................. CGAACCGCGTGGTGTCCGATGTGACCCGCCGT 204962 29 100.0 32 ............................. TCCTCCTCCTGCTCACTGCTTTCGCGTTGGTC 204901 29 96.6 32 ............T................ GCCGGGGCTCTAACGAATGGCGCGGGGCCAAG 204840 29 100.0 33 ............................. ATGGTGGACGGCAGCACGCCGGAAACGTTCTCG 204778 29 100.0 33 ............................. ATGGTGGACGGCAGCACGCCGGAAACGTTCTCG 204716 29 100.0 32 ............................. CACCCGTGCACGTGCTCGGTGGCTGGGCATTG 204655 29 100.0 32 ............................. CTGACGCGGCTGCTGTGCTGGGCATCCTTGGC 204594 29 100.0 32 ............................. AAGCACTGGCGGCACTGCGGCCGGTGCGGCGG 204533 29 96.6 32 ....................A........ GAGCATACGGAATGACAGTACCGCACGACACC 204472 29 100.0 32 ............................. ACCACCCGCGACCCGTACGACTCGGGCGGAAA 204411 29 96.6 32 ...............A............. TGGGCCGGTTGGCTGATCGGTGTCCTGACGTC 204350 29 93.1 32 ..C.....................A.... GCGCTGCATTCGCTGTACCTGTCCGGGTCGAA 204289 29 96.6 32 .............G............... CAGGTGTGTGACCTGGTGATGGCGTTGTGGTT 204228 29 100.0 32 ............................. GGCAGCTCGGCGAAGCTGACCGGGGATCCGGA 204167 29 96.6 32 ..........................T.. GCGCTGTGCGCCCTGCCGCAGCGTGTGCTCGA A [204156] 204105 29 93.1 32 ..........T...T.............. ACAGTGAGATGACCGAGCACGACAACGTGGTC 204044 29 93.1 30 ...T................A........ GAACCGCGCTGGGTGATGTGTGTATGCGCC 203985 29 69.0 0 .C.T................A..ACGTAT | ========== ====== ====== ====== ============================= ================================= ================== 26 29 97.4 32 GTGCTCTCCACGCACGTGGAGGTGGACCG # Left flank : GCCTCTACAAGCTCATGCCGCAAATCGTGCACGACATCCAGCGCCTCCTGACACCCGACGCCGAAATCGAGACAGAACAACCCGAAGAAGTCGATCTGGTGCACCTATGGGACCCGGATCTCGGCGCCATGGAGGCAGGAGTGAACTATGCGACCGACGCGGAATGGTGACCAACCATGTCGAACCTGCTAGTAATCTCAACGACTGCCGTACCGGACTACGTCCGAGGATCCCTAAGCCGCTGGCTAACCGAACCAGCACCCGGCCTCTACGTCGGCACCGTCTCAGCGCGTGTTCGCGACCGGCTATGGGAAGCCGTCAGCGACGCCGTCGAGGACGGCGCCGCAGTGTGCGTACACCCAGCGGACAACGAACAACGCTACATCGTCAAAACCGCAGGAGAGCGCCGACGCAGAGTCGCGGACTTCGAAGGCCTCCAACTCATCGAGTTCCGCGACGAAACTGACATACCACAAGTATAAAGCCGCAGGTCGCAAAGG # Right flank : GACCTGTGTGGTCGGTTGCAGAGGCGTTCTGAGAGTGCGAGATCTCTGGACTTTGCGAACCGGATGGTTATAGCATTCCTGCAGTTGAACGGGTCAGTCAGGGTGAGCGCTGAAATCCGTTCGCTTGCCGATCCAGGGGTTTCACTGCCCCGACGACGGGATTGTCCTCGGCGCGCGTCGCGATGCCACGTTCGCGTAAACGGTGGCGCACGGTCCCGGGAGCGCCATCGCGATGACGAGCGTCGGGTCGCGGACTCTGGCACGCAGACTCGATCAGCATGTAGAGCTGATCAATCTATGAGTTCGCGAGCTCGACATTCCCGCCCGCGCTGAGGCTGAAGCTCGGGGCGAGATGTCCTCCGTGAAGCACGTTCACGGAGCGCTTCATGGCATGAGTCTCAATCGACCACCACTCGGAGTGCGCGACCCCGCTCGCCAGGTAGTACGCCTGGTGGCAGAGATCGCCTAGCCCGACCTTTCCTGAACCACCTCACGTCGCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 214856-216044 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCKD010000006.1 Haloechinothrix aidingensis strain YIM 98757 Scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 214856 29 100.0 32 ............................. CTTGGTAGGTGGGCTCAGGACGCGCGGGACGC 214917 29 100.0 32 ............................. TACTTCTTCGCCCTGTTCGTAGCACTCACCGC 214978 29 100.0 32 ............................. CACGAGGTGAACGTCGGCACCCTGTGGCGCAC 215039 29 100.0 32 ............................. GCGAAGGACAGGATTGCCTCCGGACTGAGCGT 215100 29 100.0 32 ............................. AAACCGAAGGTTGTCCACAGACGGGTTCGCCC 215161 29 100.0 32 ............................. GCACGCGCCGCTGTGGCGCAGCGAGACCAACA 215222 29 100.0 32 ............................. TGGGTGGTCGACGCTGGCGACGACGTGCACAA 215283 29 100.0 33 ............................. CGGGTCATTCCGGGAGCCGCACTGGTGTACTGG 215345 29 100.0 32 ............................. TTCGCTCCGGTGCCGTTCCAGGGTCTGCGCTG 215406 29 100.0 32 ............................. GCGTCCTCACTCAGGAGATCGGCGGGCCGCAG 215467 29 100.0 32 ............................. TCCTGGAACGGCCCGCCGGTTGGGATGCTGTT 215528 29 96.6 32 .......T..................... TCCTGGAACGGCCCGCCGGTTGGGATGCTGTT 215589 29 96.6 32 .......T..................... GCGTCCTCACTCAGGAGATCGGCGGGCCGCAG 215650 29 100.0 32 ............................. CACGCCGAACGCACCGCGAAAGCGCTGGAGGC 215711 29 96.6 32 .......T..................... GTGATGACCCAGCTGGGTCACAAGCAGCCGCA 215772 29 100.0 32 ............................. TAGATCACCGGCGGCGCGTCGTCGAAATCGTA 215833 29 96.6 32 .........G................... CTCAGCACGGCCCGGTCCCTGCTCGATGCCGA 215894 29 100.0 32 ............................. CCAACGACGGCGCGGCTACAGATGTTGTCAGC 215955 29 100.0 32 ............................. GACGACTGGAACATCGAAGAGGTTGAGGTGGC 216016 29 93.1 0 .........................T.T. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.0 32 GTGCTCTCCACGCACGTGGAGGTGGACCG # Left flank : GAAACGTTGGCGTGAGCTTACCGACGTCATGCAGCCCCGCCCAAAACGCCACAAGACGTCCAGCATCCTCAACAGACATCCCCAACTGCTCCGCGACCCACCGCTGCGTGCCCGGAGCAACAACATCCCGCCACACCATCCGCGCCACCGCCGCCGTATCAAGCAAATGACACATCACCGGATAACGCGCACCATCCAAACCCCGCTCCTTCCCCCACAAACAGAGATCAACCCAACCCCCATCCCTCTCAAGTATCACCACGCACCCCCGCGCACAACCATCGCCACAACTCGACCTACCCCACCAAACACAACACCAAGCAGTTCAGAAACAACCACACACCCACGCACCCACCCCCGCGCTACACTCCCCCACACCACCACAACAACCACTACCCGAAACACGACGATCCACACATACATCGCGTTACAGACACAGCACCATTGAACACGCAACGTCAAACGTGCACAGAGCCACACAACACTCCAGGTCACAAAGG # Right flank : GGACGTACTCGCGGCTTGAACCGTTTAGTTGATGAGCTGACTGAAGTCAGGACAGTGCCCTTCAGTAGTTGGGGTCTAGCCGTGTCTGTCCTGTGGCGCAGAAGAGCGGGTCAGGTTGGCCGTGATTGTGTTCGGCGTTGGAATCGCTGGGGCCATCTTGTGTCGGCGGTGTTGGGTGTGGGGTGTTCTTCGTTCGCGGTGATGCTTCGGTGTCTGGGTTGTGCGCGTGAGGTGTGGGATTCGTTGGTAGCGCGTGCCACGATGCGGATGGCACAGCGGCTGCTGGTGTCAGTGCTTTGACGAGGGCTTGGTGTGTGAGGACCACTAGGCTGCCGCGGTGGTACTCCGTGCGCCAGCACCCCCCGTGGAGCGTGTGTGGGGTCTCGGGTCGGTGGAGGTCCGTGTCCAGGTCGACACCGCTGGCCGCGCGGATACGGACCGATGTCGTGGTCATGCTTGCCTTGTTCTGTTGGATGCGGCCATGGACGATCGGTCACCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //