Array 1 42893-43592 **** Predicted by CRISPRDetect 2.4 *** >NZ_PURW01000012.1 Escherichia coli strain GER_MD14_1507_Eco_051 EC-BIM051-51-VE-DEU-2015-033-PK_S65_222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42893 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 42954 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 43015 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 43076 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 43137 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 43198 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 43259 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 43320 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 43381 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 43442 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 43503 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 43564 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69292-71028 **** Predicted by CRISPRDetect 2.4 *** >NZ_PURW01000012.1 Escherichia coli strain GER_MD14_1507_Eco_051 EC-BIM051-51-VE-DEU-2015-033-PK_S65_222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69292 29 100.0 32 ............................. TGAAATTATCATGCCAGCGCCATCTTGATGAT 69353 29 96.6 32 ............................A TCGAAAAGCTGGCGGTAAACAAAACGCGTGAA 69414 29 100.0 32 ............................. TCGCTTTTGGCTGTCTGGGCGAATTCCGGAAC 69475 29 100.0 32 ............................. TTCAGGAAACCGGCGACAGCTCAGCTGATAAT 69536 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 69597 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 69658 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 69719 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 69780 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 69841 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 69902 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 69963 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 70024 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 70085 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 70146 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 70207 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 70268 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 70329 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 70390 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 70451 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 70512 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 70573 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 70634 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 70695 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 70756 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 70817 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 70878 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 70939 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 71000 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //