Array 1 60794-59789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNRQ01000008.1 Escherichia coli 3-020-07_S1_C3 e302007S1C3.contig.7_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60793 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 60732 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 60671 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 60610 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 60549 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 60488 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 60427 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 60366 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 60305 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 60244 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 60183 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 60122 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 60061 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 60000 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 59939 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 59878 29 93.1 32 ............T.....A.......... GACGCACTGGATGCGATGATGGATATCACTTA 59817 28 75.9 0 ..A........C..T....T-.G.....C | C [59792] ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGATTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 86375-85737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNRQ01000008.1 Escherichia coli 3-020-07_S1_C3 e302007S1C3.contig.7_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 86374 29 100.0 32 ............................. GTATCTGCATATCATCAATTAAAAATCCCTGA 86313 29 100.0 32 ............................. GATATTATTAATTTTTTCATGCTTCGTCTCTC 86252 29 100.0 32 ............................. GTTGACGCCAGCGGGGACCCGCGCCACGGCTT 86191 29 100.0 32 ............................. TTCTGGGTAACTGGGCGTGGATATCCGGCGAT 86130 29 100.0 32 ............................. CTATGAAGGCGTAGTGGATTCAGTCATAAAAA 86069 29 100.0 32 ............................. AGGACGTAAACCCAATGAAAAACATGATTGCG 86008 29 100.0 32 ............................. CGCGGCAATGGATGCGCAGGTACGCGAATTAA 85947 29 100.0 32 ............................. GTGTTTGAGGTGCCGCAGCCAATCTGTACGTC 85886 29 96.6 32 ..............A.............. ATCTCGCTTCTGATGGTGCACCTCATCAATAG 85825 29 96.6 32 ..............A.............. AGATTTTGGGACAACGTATTCAGTCTGGACGA 85764 28 86.2 0 ............T.A..........-..A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GAGTTCCCCGCGCCTGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTCGATTTTAGTTTGTATAGAGTTATTTTAATTATTTACTTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTTAGGTATGTTCAGGCCGGGCAGTTTTCCGCCCGGCCTACCTCATTCACACATTCGACCAGCTCTGGATCGAATCCGCATTCCCCAATTCCCCATGCATCACTTCATACGATTTTTTCAGAATCACATCAGTGTGTTTGGTTAAATCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCATTGCTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTATCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCTGTATTAATCGCTGCCCCCAGGCTTGCACAACCGTTAATGGCGTTACGTCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCTGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCTGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //