Array 1 770246-768562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051162.1 Geobacillus subterraneus strain CPW16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 770245 36 100.0 30 .................................... TTGTTGGACGAAACGGTCTTTCGCGTCGAA 770179 36 100.0 30 .................................... GTTCTACTTCTACGTGACCGACGAAATGCA 770113 36 100.0 30 .................................... AAAATCATTAAGAACCTCTAAAACAGGTAC 770047 36 100.0 30 .................................... CGATCATTCATGGCAAGCTGATTCAATAGG 769981 36 100.0 30 .................................... CATGCAAACGAATAGCTGTTGAAGAAGAAT 769915 36 100.0 30 .................................... ATATTTGGTTGTATTAATGTTGTCAATTTG 769849 36 100.0 30 .................................... GCGGTACTTCCAATCAACATCAAAAACAGG 769783 36 100.0 30 .................................... TTGTATCTATCCCATGCGGTCGGTTTCCGA 769717 36 100.0 30 .................................... TACTTTTTACGCAAATACACAGTTGACACA 769651 36 100.0 30 .................................... TACTTTTTACGCAAATACACAGTTGACACA 769585 36 100.0 30 .................................... TGATGTGCTGGAGTTTACACACAATGTAGA 769519 36 100.0 30 .................................... ACTATGGGAACTATATAATTATATATGTTA 769453 36 100.0 29 .................................... ACCATGGCTGGACGGTGGAGCGTCTTTAG 769388 36 100.0 30 .................................... CTGACCGGGAAGGGGCAGCAAAAATGAAAA 769322 36 100.0 30 .................................... CATCGAACAGGCGGCGGTGCCGCGCTTCGT 769256 36 100.0 30 .................................... ATTCGTATTGGTACGGGTAATCAAGGATTA 769190 36 100.0 30 .................................... CGACTCCTTATCCTTGAAAGAGTACGATTG 769124 36 100.0 30 .................................... TCCGCCATCCGTTGCTGTTACAGCGCTAAC 769058 36 100.0 30 .................................... ATTCCTGTTTGTTCAGCGTCCCGATTGTAA 768992 36 100.0 29 .................................... CGCGCCCATATGTCAGAAACTGTGATGCT 768927 36 100.0 30 .................................... TTAACTCTCGATTTTGATGAACTCCCGTTT 768861 36 100.0 30 .................................... CCATCTCCCGCAACTCTTGAAGAAGTCCTT 768795 36 100.0 30 .................................... TGAGTTCCGGCTGGGGCGAAAACGGATCAT 768729 36 100.0 30 .................................... TACCATTTTGCGAAATAAAGTATAAAGTCC 768663 36 100.0 30 .................................... CGATCGCCGGGCTTGCCGATCGTCGGGCTT 768597 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : AGCTTCGTCACGGCAAGCCGAAGCCAAGACCCTTCGTTGTTGAAATTGCCGGAACTTCTCCCGTTGCAACTGCACGTATATGAGTAAGTTTATGCGGTTGCTCGTCTTTTTCGATCTTCCCGTCGTGACCAACCGGGAGAAGCGCGAATACCGGCGATTTCGCACATTCCTGCTGAACGAAGGGTACGATATGTTGCAATTTTCGGTCTACAGCCGCGTCTGCCACGGACATGAAGCAACGGACAAACATTTGGCAAGATTAAAACGCAACTTGCCCCCTCGAGGATCGATTCGGGCGATGGTCGTAACGGAAAAGCAGTACGCAAAAATGCAGCTGCTTCTCGGGGAACCAACGGCGCAAGAAAAGAAAGTGACATCCACCCAGCTGACGCTTTTTTAAAAAAAACAGAAATGGTTCCTCTTTTTGCATAAGCGCCTTTGCATTTTTTGAAAGCAAAAAAGCCTGCGATCCTTGAGATTGCAGGCTTTTTTGGATACGT # Right flank : AAACGCATAAAACCATTGTCGTCGATCCCCCGGGATTTTTGCACGATTGGGGGTCGACGACAATGTGAGGCTCGACGGCGAAAAGTCTGCTCTGCTTACCCCTTCACCCGTTCGATCTTCTCAACCGGCAGCCCGGTCAGTTCGTGGATCGTGTCGACATCGTATCCTTTCGCCAGCATTCTCTTCACCACGTCGAGCTTCCCTTCCTCGATCCCTTCTTGGCGTCCTTGCTTCATCCCTTGCTTTATTCCTTGTTTCAACCCTTGTTCGATTCCTTGTTTGACTCCTTGTTGAATGCCTTTCTCGATTCCCCGCTGTTCGTATGAGATGATGAGCTCCATCACTTGTTTCGCTTCCTTCGTCTCCATTTGGCTCACCTCGTTTCGCAGTTTCGCTTCCTCCTCTTCGGACAACCGCAAATACGTTTCAAAAAACCCAAACAACAGCCGCTGCTTCGCCTCATCGAGCTCGAGACGGACGAGCATGCGCAAAAATTCCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 776035-776261 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051162.1 Geobacillus subterraneus strain CPW16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 776035 30 100.0 36 .............................. TCTGCATCAATGAGCAGAGAGAAGAGAAACAACAGT 776101 30 100.0 37 .............................. CCGTTTGACCTTTATAATATTTTGGCTGTTATCAATG 776168 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 776233 29 73.3 0 ......G...CG.....A..A.-GC..... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 92.5 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTGATGATTGTGGAATTGAACTTGACAGAGATCGAAACGACAGTATCAATCTTTCGAGATATCCTGCATAGCGACTGGTACCGTGAGTTGCACGGGAAGTGAAGCCTTCGGAGCGTCAATCAAACGAGAGCAGTTTCGGCGAAATCGGACAAGGATCAAGCAGGGAATGAAGCATGGGATTGAACAAGGACGCCAAAAAGGATCGAGGAAGGGAAACCCGACATCGCGAAGGAAATGTTGATGAAAGGGTAGGATATCGACACGATCCACGAACTGACCGGGCTGCCGGCGGAAAAGATCGAACAGCCGAAGAAGTCAACCCGCCTTTGCATTGTCGTCGACCTCCAATCATGCAAAAAACCCGGGGGATCGACGACAATGGTTTTTGACGCTCCAAGCCTACAGCCATCACGATTGAAAGTCATTGACAGAATTTTTGAAACGTGCTATGCTGAAAATAGCTCCAAACCGAAAAGCTTGATGGAACAAGCCTTTTTGGG # Right flank : CCCTCTTCAATGTCACGCCATCGTGTGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGGCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACCAGGCATGGTTGTTCACCGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACGGGGGTGGGATGGATGCGCCGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGGTGGGGAGACGCAATCAAATCACGGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGTAAAGATGTCGATGAAC # Questionable array : NO Score: 8.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2472173-2471025 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051162.1 Geobacillus subterraneus strain CPW16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2472172 30 100.0 37 .............................. GAGCGAAGCGACGCTTTCAAAGACAAAGGGCGATGCC 2472105 30 100.0 35 .............................. AAAAAATCGTGTATCTTGTCAGCAAACCACCTGGC 2472040 30 100.0 35 .............................. CTCAATAAAACCCCTCCATTCACCGAAGGAAAAGA 2471975 30 100.0 34 .............................. ACTGGTCTTTCACAATTATCGACTTTGCACACTT 2471911 30 100.0 38 .............................. ATTTTTCGCCAATAACATTTGTTCGCGGTACGTATCCG 2471843 30 100.0 35 .............................. GCGAAATAAAGGATTTAGAGTTGGCGAACATATCC 2471778 30 100.0 35 .............................. ATGAAAAAGGCATTATTAAAGGTCGCAACATGACG 2471713 30 100.0 35 .............................. GCGATCAGTGGATTTCCTTCTTCTGTTCCATGTTG 2471648 30 100.0 37 .............................. GAGAGTATGCTGCTGAACATCAGTGGACTGAAAAAAG 2471581 30 100.0 35 .............................. TAAAGATGTGTGATATGCCGATGTTGGACGAGCAA 2471516 30 100.0 36 .............................. TCATACAGGCCGCTTAACGCGGGATACAGCGTTTCA 2471450 30 100.0 38 .............................. AAAGTTACTGTATTGAACCATTCTGTCGGCATTTCTGC 2471382 30 100.0 35 .............................. TCAAAATCGTCTACCGTCAGTCCACCAGGTTGAAC 2471317 30 100.0 36 .............................. GCTTCCTCCGCGGTTTGACAAATAAAAGAAACGAAA 2471251 30 100.0 36 .............................. CGAATGGGCGTTAGCAAATGGAATCTGCGCCGAGCA 2471185 30 100.0 35 .............................. AAATCATACATATCTTTTTGTAAAATATCTTCTAC 2471120 30 100.0 36 .............................. ACCGCTGATGTATAATAGCTCATCGAATAAGTTTCT 2471054 30 96.7 0 ............................C. | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 99.8 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGGGAGCGCAAATCGCCTACGCCCGTTTTACTGCCTTGCCGCCGCTTGTGTATGTGAGTGTGTTCGGGCGCTTGATATTGTCGCCGCTGTTGGCTGCGTCTTTGATCTTTCTATTAGGAATGGATGGAGTGACGGCTCAGGCATTGCTCATTGCCAGTTCGTATCCATGTTCACGCAATACGGCGCTGTATGCGCTCGAGTATGACTGCCACCCCGATTACGCCGCCCAGGCAGTGCTGGTGTCGACCTTGTTGAGCGCCATTACCGTGACAGGCACAGTATATGCGGCCCGCCTGCTGTTTCCGATTGGCGGATGAAAACGGGGGCAAGTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTCTTTTCGCGTCAAAATCCTACAGCCAACACGGCTGAACAGTATTGACAGAATTTTTGAAACGTGTTATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTACGCACATGGTTTGGG # Right flank : TATCTCCCTGCCACAGCTGAACCACCGCTGAGTTCAGCTTGTTTTACCGCTCGACATAGGAAAAGGACAAATGCGAGATGGCACATGCCAAAAAAACGCGGGGGGGAAACAAGAAGGAATTCGGCCGCGAAGGGCGAATACAGTACGGTGAATCCGACATTGCCGGGAGGGAAAACGCGGCTAGGAAGCGAATCGATCATGACCGGTTGTTCAAAGAGCTGCTGTCGACGTTTTTTGAAGAGTTTTTGCTTCTTTTCTTTCCCCACGTGTACGAGTACATTGACGTTCACCATCTCTCTTTCCTCTCCGAGGAACTGTTCACCGATGTGACGGCCGGAGAGAAGCACCGCGTCGACTTGTTGGTCGAAACAAAGGTAAAAGGGGAAGACGGGCTCGTCATTGTCCATGTCGAGCATCAAAGCTACACCCAGCGGACCTTCCCCGAGCGAATGTTCCTCTACTTCAGCCGCTTGTTTCAAAAATACCGCCGCTGTATTCTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 2480731-2480234 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051162.1 Geobacillus subterraneus strain CPW16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2480730 30 100.0 35 .............................. TAGAATTCCTCCAAGCAAATGTAATCGTGCGCTTT 2480665 30 100.0 40 .............................. GGGCCCCTTGAGCCACGCTTCAAGATCCCAGACGGCAGAG 2480595 30 100.0 38 .............................. ATGGATGAGGAAAGTTTGCAGCTGTCCCTTTTTGAAGA 2480527 30 100.0 37 .............................. ATCTCATATCTTCTTAAAGCTTTGCGAAACTCTTGAA 2480460 30 100.0 35 .............................. TAGTTATGTTGAATCCCGATCATAGTGTCGATGAA 2480395 30 100.0 37 .............................. GCAGCGGATGAGAAGAGACGGCGAAACTTGGCTTAGG 2480328 30 100.0 35 .............................. TACTCACTCGTACCGTTCCAATCGGACTGTTTCGG 2480263 30 83.3 0 .C.........C..C..C..T......... | ========== ====== ====== ====== ============================== ======================================== ================== 8 30 97.9 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AATCCGGCGCTGTCCGACGACATCATCCGCGTCGCCCGCTCGCCGATCCGCAAACTTGGACCGAACGACCGCCTCGTCGCGCCAGCCGTGCAATATTGCGCCTTATTCGGCAACGCCCCGCAAGGCTTGGCTAAAGGAATCGCCGCCCTCCTGCGGTTCGATGATGCCCGCGATGCGGAAGCCGCTGCCCTTCAACAAACAATCGCCCAGCACGGGATCGAAGGCGCGCTTCGGCAATATGCAGGCCTTGAGAGTGGGCACCCGCTTGTGGCGGCGGTGAAGGACGAGTACGGAAGAATGAAGAAAAACAAAAACTGACCGTCTTGCAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATATTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAGCAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGGGG # Right flank : ACTGTGTAGTACGGCACAACTTTTTCTGTCCCCCATGCAGGATTTTCACCCCCTGTTTGCGAATGGATAGAATCGAACACGTTCAAAGAGGGGTGATCGAATGGCCATTGACCATGACCGATTGTTCAAAGAGCTGATTCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTCCCCGACATCCACGAGCATATCGATTTCCGCCATTTGTCCTTTTTGTCCGAAGAACTGTTTACCGATGTCACGGCAGGCGAAAAATACCGCGTCGATCTATTGGTCGAGACGAAGCTGAAAGGGGAAGACGGGCTGATCATTGTTCATGTGGAGAATCAAAGCTACGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCTATGAGGCCCTTCGCGAGGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //