Array 1 24130-21274 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLFM01000004.1 Gallibacterium anatis strain 2PKA3 GA2pka3scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 24129 36 100.0 33 .................................... CAAACAACCCTACAGACTCATATTCGCCATCAG 24060 36 100.0 34 .................................... TAAACCTACCGGTGGAAAATACGCGAATGAAGAA 23990 36 100.0 35 .................................... CGTTAAGATTGTTTATAAGATATTCGATGTTAGAT 23919 36 100.0 36 .................................... CCGACAATAATGGGAACTTCTTCACAACCTTGTATT 23847 36 100.0 33 .................................... TTGTTGAGCGATTTCGATACCGTCGTCAACGAT 23778 36 100.0 35 .................................... ATATCTACCGCCTGCTGGTAAAGAGCGGCTTCTAA 23707 36 100.0 36 .................................... TTAATCCACTTCTTGAATAGCGGATTTTTGCACTAA 23635 36 100.0 35 .................................... CTTCATTTATTAGTTTATTTTTTCGGCGTTCTAAT 23564 36 100.0 36 .................................... GTTTTCGATTTTATCTTCTAACCCTTCCCTATACCT 23492 36 100.0 34 .................................... TCGGGTTGCTTGATGCGTGTACCTGTTGTTACAC 23422 36 100.0 34 .................................... CTCAAGAGTGTGTTTTGTGAAGTTCCCGTTTTAC 23352 36 100.0 34 .................................... AAGAACATTGTTAATCTTGAGTCAGTTGTTAGAT 23282 36 100.0 35 .................................... AGTTAAAATTTCTGAATTACCTCGCACCTGTATCG 23211 36 100.0 33 .................................... TCTAATGGCTCACCATATGCCGCGATTATTTCT 23142 36 100.0 37 .................................... CTTGAATGGTCGAATTGAGTACTCTCAATAGCTTCAC 23069 36 100.0 34 .................................... GCCTACATCTTACCTGTCTTCAATCGCTACCTGT 22999 36 100.0 37 .................................... CTCGCTTTTTGTGAGCTTATCAAAGCTTACGAAATCA 22926 36 100.0 36 .................................... GTACAGGGCAATTTCTAAGTTAAGGCGTGCAGGGTA 22854 36 100.0 33 .................................... GACGAAAGCAATGATAGTTGCAATGATATGACC 22785 36 100.0 35 .................................... TTTTCTATTTCTGGGTATCCACCACCGCAGTTAAG 22714 36 100.0 34 .................................... CAACAGTTTCTGTTGTTCACTTTTCGTGAGCTTT 22644 36 100.0 36 .................................... TTACCCACTTGCAAGGTTTTCAATGCACTACTTACA 22572 36 100.0 33 .................................... CTTTTACGGCGTAGCATTTGCTACCGAGAAATG 22503 36 100.0 35 .................................... TTCGTAACCCGCAGAGTCTTCCGCCCAGCCGCGTA 22432 36 100.0 34 .................................... AAATAGGTTTTTTGAGAGTCATCCACCAATAGGA 22362 36 100.0 34 .................................... TTTCGAGTTCTTTTGGATTGACGCCACTACTAGC 22292 36 100.0 28 .................................... CTTACCTGTCTTCAATCGCTACCTGTGC 22228 36 100.0 37 .................................... TACTTCACCAAATTCTAAAGAGCCGTTTTCTAACGAC 22155 36 100.0 36 .................................... TTATCTAATAGAAATTGTTTTAGTAATTTTAGTTTT 22083 36 100.0 35 .................................... GTCGCTCGGTGGGTTATTGTGATCACGCTGATAAA 22012 36 100.0 35 .................................... GTTATCTTCAATTTTCCATTCCATAATGATTTACC 21941 36 97.2 32 ...................C................ AAATAGACCAAGTGTTTCTAAATCTGTTTTAA 21873 36 97.2 31 ...................C................ TTATCCTGCCCCGAGTTCCCAGAGGTTTCGA 21806 36 97.2 38 ...................C................ AAATCCTCGTAAGTCATTTTGTCTTTTGCACACAATGC 21732 36 97.2 36 ...................C................ AATCATAGCAGCATCAACTTTTCTCATAGAACAAAC 21660 36 97.2 33 ...................C................ TTCAACGCACGGCTTACTACTTCGTGGCACGCA 21591 36 97.2 36 ...................C................ TTAATATTTAAACCATCAATGTAATGAATAATGAAA 21519 36 97.2 36 ...................C................ GTAATTCATTTTTTTGTTGTTTAGAATAATAAGGAT 21447 36 97.2 31 ...................C................ AATCATATTCATTAAGTTGTCTTGCCGTTAC 21380 36 97.2 35 ...................C................ CGACTAGCGGGTCGTCATAGCAGTCTGAATCGTAT 21309 36 83.3 0 ...................C...........ACTTT | ========== ====== ====== ====== ==================================== ====================================== ================== 41 36 99.0 35 GTTCTAACCTAGCCCTGTTTTAAAAGGGATTGAGAC # Left flank : GAGGTTGCAAGATTGATTAAACAGGTGGATGACAGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAAATGAAACAGTTCGTCATCGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCGATTCCGTTACAATATAGTATTTTCTTATTTGAAGGAACAAAGGAGCAGTTGCAGAAAGCCATTGCACCGGTGATTGAAACAATTAATAGCAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAGGAGCGAATCGGAAAAACAGTTTTGCCGGAGGGCATTGTGTTAACGGCGCTACCAACCAGACTATAATTTTGCTTAAATAATAATCATATTGGAGGTTAACTATGCAGTCATTTATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACAGTGTCGGGA # Right flank : TATAAAAGACATTAATGATAATTTTTTAAGGAAATATCAAATTTGAAATTTTTCTATCTATAGTAACGGTTATATATACTTAGCTTTGTTATTACGAAGTAATAATGAAATTAAGTATTTAGTGTATAAATTTAGGAGAAATTTTATGAAAACAATTGCAATTATTTTAACTACTTTATTTGCGGTTACCGTTACTGCGCCTGTGTATGCCGGTTCTTGTGATTATTCTTGGCAAACTGCAAAAGACGGTTCCCGTTGCGGAGATCGTGCTGCGGATAGAAGACCGGGAGGCAGATAAAAGATAAAATGCATTTTTTATTATTTACTATAGTTATTATTTTTGCTTCGCCGGCATTTTGTTGGACGGGATATAATTATGATACCGGCTCTTATTTTGAAGTTGAACGTTATGATCATCAAGGATTGGGTGAAGGCCCAGTGGAATATTATGATTATGACAGTGGAGAATATAAATCAGGTTATTTAGATCTATTTCCCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTTTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //