Array 1 47-535 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFM01000047.1 Halococcus agarilyticus strain 197A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 47 30 100.0 35 .............................. GGCTTGATATAGGACTGGATGAAGTCGCGGACCAT 112 30 100.0 36 .............................. GCGCGCTCCAGGGAACACTTCGGAGTAGCACAGCCC 178 30 100.0 34 .............................. CTACGTGACTTACGGAGTAAGACTTAATAGGATG 242 30 100.0 36 .............................. GCCTGGCGGGCCTCCGCGGCGGCCTCCTGGAGGATG 308 30 100.0 35 .............................. GCGCTCGAACAGCACGGCGTGACGGCGATGGAGGG 373 30 100.0 35 .............................. CTCGGGAGTGCTGGGTTACGTATCAACACAGCCGA 438 30 100.0 38 .............................. GACGGGACGATGGTGTCCTCGGCGGGCGCGGTCAACTC 506 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 36 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : TGGGGTTGAAGCAAGCCTCGCTACGGGCTATCGTATTGGATATATAG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 489-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFM01000048.1 Halococcus agarilyticus strain 197A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 488 30 100.0 35 .............................. TCCATCCAGTTTGACGAGAACGGCACCATGCACGA 423 30 100.0 35 .............................. TTACTATCAGCAAGGCAGATAGCCTTGCCATCCCA 358 30 100.0 35 .............................. AGGTCGAACTTGACGGCAACGTGACCGAGATTCGT 293 30 100.0 35 .............................. TCGGTTTCGGCACGCTCGGCGTCGATCAACCCCTC 228 30 100.0 35 .............................. AGAGTTGTAGCCCATGAGACAATCGTGGGGGGCAC 163 30 100.0 35 .............................. AAGCACCGGCGACATCGGGTGGCGAGAGCGACACC 98 30 100.0 33 .............................. GTCGTCGAGCAGTCCATCGCTCGGAACGTGAAT 35 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 8 30 100.0 35 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : TACGTCGAGAACACCAGCGAGAAGCCCGACCTCC # Right flank : CGTCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 282-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFM01000036.1 Halococcus agarilyticus strain 197A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 281 30 100.0 36 .............................. CCAATCGAATCGTGGGTGGATCGCTCGGTCAAACGA 215 30 100.0 37 .............................. AGCGGGTGGCGGTGGATCTTGCCGTGCCAGTGGTCAG 148 30 100.0 38 .............................. CGAAGTTGGTCAGTTGTACGTCTGCTCGTTGCTTAAGC 80 30 83.3 0 .......................G.TG.AG | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 95.8 37 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : AGCTTAATCCCGCCGAGTCGAATACGAACGACCAGCCCGGGTGGCTTAGCTGGACATAGCGCCGCACTCATAGGGTTTCGAGACGGGCGCAGCTCCCTTCGAGGCCGCCGCCTCGAACCTGGGACATGCGGAGATCGAGGGTTCGGAGCCCTCCCCGGGCACTTCTCGCGAATGCCACGAACCTCGTGTGAGCGACAGCACCGAGAGAAGTGCTTGGGAGACGCGACGAACCCGATCATCGACGAGCGAAGCGAGTCGATGAAAGGGAACGAAGCGAAGTGACCGGCGTTCGGAGTCCTCTCTCGGGGATTCTGCGCTGTACCGAGGTGCTTCGAGCCACCGCTGGCGGTTGCTGCAGCGTGATCGATGAACGTGGAGGATGACGTCGCCAGCCGAGCGTTTTCCATCGACCTGGTGGGGTACAGCGTGTATCGAACATCGACGAAAACACTATGACGTAGCTGGGGGATAGCACACGTATGTCCGGCGAACCGGACATG # Right flank : GCCGCGAGACGACGGAACGAATCGCCGAGTATCAGGCGTTTCAGACGAACC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 69386-69029 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFM01000017.1 Halococcus agarilyticus strain 197A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 69385 30 93.3 34 A............................G TTGTCGTACAGCTCGTCGCCCGCGCGGAGCTCGT 69321 30 93.3 35 A............................A AAAACATCCGCACGAATGGTAATGCTGACGGCTCA 69256 30 96.7 37 A............................. TGCGGTCAGGCGTGGGTCGTCAACTGCGACATCAACG 69189 30 100.0 35 .............................. TCTCCGGGGCCGAACACTTCCGGCGGGAGGTAGTT 69124 30 100.0 36 .............................. GGCCTTGACGTCCGGTCGTCCCTTCGTCCACAGGTC 69058 30 80.0 0 ..........G......A.C.A.....GA. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 93.9 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : TTGTGGGGTTGAAGGAAGCTTCGCGCCGTCGCCGTCCAAATCCCGCCCC # Right flank : GCCCTGTTCACGAGCTACGCGCAGACGAGTGACGTGGTTGCAGATAGGAAGTGATCGACCGACAGAGACGTCCTGCACGACTCACCAGGCCACGCCAGGCGTCGTCGCTACCGAAACGGACTGTATTCCCCGTTGATGTCCCACTCGTGAACGCAGTAGACCTCGCCGATCGTTTCGCCGTCGACCGTCCACGTCGCCACGTCCTCGTCCCACGCCTCTCGACGACCACACTGTACACACTCGCGTTCGCGCGGCGGCACGAGATCAGCGCTCATGTCCCACCATACCACCCCGTCGCTCTTAACCGCTCGGGGGTTCGTGTCGCTGACGTCCCAACTGGAGCGTGCGTTCGTTCGGCAGTCCTCCAACCACTTGCGTGGGGTTTCACATACCCCGATCGTGCGCGCTGACGACCCGATGAGACGGTCGTCGCCGACGAACAGTATATACAGATCGTTATGGGTTATACCACACTGGTGTGTTAATGCATAGCACTTTAG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 39-394 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFM01000003.1 Halococcus agarilyticus strain 197A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 39 30 100.0 35 .............................. GGCGTCGGAAGCGTTCAACCCCTCGCGCGGTCGTT 104 30 100.0 35 .............................. GGCTGGACGCCGCGGTAGTAGAGCATCTTGACGAG 169 30 100.0 35 .............................. GGGAGCTGCGCTTCTCAGCGTCGATCAAAAATACG 234 30 100.0 35 .............................. CGGCGGGAACTCTGGCGGCGGGTCTGCCAGGTCAC 299 30 100.0 36 .............................. GTACCGGATAACCATTCGGCGGGCGTGCTCTGCCGT 365 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 35 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : GCTCGTGGTCCGTGCCGTCGGTGCCGGTGATGTCGATCG # Right flank : AGAGGATCCGATCGGCGCAGGCGAACCCGGCGACGATCCCACCGTTGAGGCTGCGCTCGGGGTACTGTGCTCGGCTCGCCATCCCCGCGTAGTGGATCCCCTCTGCGACCTCGCTCCCGAGATCGTAGGGAATCACCATGTCGAGATAGCCTCGTTCGTAGACTGGCGCAGTGCGGGGGTTCCGCGCGGTCTCGATCCAGTTCACGCTCTCGCGATCGAACTCGGGGAAGAGGTCCTCGATCCCCGCGAGCCAGGTTTCCTCGACCCCGTCGTCGTCCATTCGCCAGAGCGCCTCGTCCGGATCCTGAACGTAACTCACGGCGTAGAGGAGGTGCTCGCCGCCGTAGCGCTCGGGTGGGACGAAGTTGGTGTGTTCGATCAGCGCGCCGAAGGGGGCGTCGTCGGCGATGTTGAGCCAGTAGGTGTCCATCAGGGGTTCGGCAAGGCTCAGCACCGAGCAGACCGTCCCCTGAAAGTCGATCTCGCAAGTGTAGCCCGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 198-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFM01000053.1 Halococcus agarilyticus strain 197A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 197 30 100.0 35 .............................. ATCTGACCTTGCAGGCTGTGCCTGACAGGGGTCGG 132 30 100.0 36 .............................. TCGGCAGTAGAGCACCCCTCGCCCACGATAGCGGCG 66 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : GTGCCGCCCTGCGGTGATGCTGGTCC # Right flank : CGGCGACTCCTTCGGCGACATCCCGGACGAGACGGTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [18.3-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2-357 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFM01000051.1 Halococcus agarilyticus strain 197A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2 30 100.0 33 .............................. GCCGACACGTTCGCAGCCACGCAGGTTGCACTC 65 30 100.0 35 .............................. GGCGAGTGGCGGCCAGTTGACGTCGAAATCGCCTC 130 30 100.0 35 .............................. ATCTCGGACACGGTCTCCGGGATGGTCTCGACCGC 195 30 100.0 36 .............................. ATTCGCTACCTCCGAAGTCGAGGTACCGAATCTCCG 261 30 100.0 37 .............................. CTTGAGCGTCCGCGAGAGGGTGAACGCCGCTTGCACG 328 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 35 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : GG # Right flank : CA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 36-196 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFM01000052.1 Halococcus agarilyticus strain 197A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 36 30 100.0 36 .............................. GTTCATGATTCTTGGATTTTCCGGAGGTGCTCCGCC 102 30 100.0 35 .............................. GTCTACGGCCAGGCCGTGCAGGACCTCAAAGATCA 167 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : TTCGCTGATTTGGATAGTGGTCGACACGGCCTATAG # Right flank : GGCCGCCACCCCCTCGACGGGCCGGCCGTCAGATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 381-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFM01000050.1 Halococcus agarilyticus strain 197A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 380 30 100.0 38 .............................. GATTTCACGGTGTCGAGAAACGTGGACTTCCCCGCTGG 312 30 100.0 35 .............................. AACGCTGAGAAGCACGTAAAGCACCGCGTGTGCGA C [300] 246 30 100.0 33 .............................. GTCCGTGTGAGAGAGTCGACGCGGGACGCTCGA 183 30 100.0 35 .............................. ATGCCGCGGTCTCAAGGCGATGAGACCCATAGCGG 118 30 100.0 37 .............................. CTGGGATGACCACGACCGCGCCGCCTACGAGTGTCCG 51 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 36 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : GGGGTTGAAGCTTGTGTTCGCGTTTGTGTATCTCGAAGTTACT # Right flank : CGAGTTCCACGACAAGCGGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 450-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFM01000049.1 Halococcus agarilyticus strain 197A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 449 30 100.0 35 .............................. ACGTAGAAGCTATTGGGCAACGGATATCCGAAGTA 384 30 100.0 35 .............................. CCCGGGTGGTCGTTGACTGAGCGGGTGGGTCAAGT 319 30 100.0 37 .............................. CCCATCAGCGGGCCTCCTCGCAGCCGGATCGGACGTG G [296] 251 30 100.0 34 .............................. GCAGACCTTCTTTTGCGTAACCTGCCCCTCTCGC 187 30 100.0 34 .............................. CTCAACAGCCTGATGGTCGACTTCGACCTCGATC 123 30 100.0 35 .............................. GCCGGATTCCTTGAGCTTGAAGAACGAGCGCCACG 58 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 35 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : GAACCCTCGTGGGGTTGAAGCTTCGATCCGCCGCTCGATAGCCTCACGGACCCACG # Right flank : CATCCAACCCCCGACCGCTTCGACTCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //