Array 1 177850-176704 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZWE01000002.1 Halococcus sp. IIIV-5B NODE_2_length_234216_cov_16.7218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 177849 30 100.0 36 .............................. GGATAGGGCGAGCATTATCTCGGCGTGGGGGTCCTC 177783 30 100.0 35 .............................. CGGTGGGTAAGCTATTTGTGCGTGGCGCTCTCACT 177718 30 100.0 35 .............................. CCCGAACTCGATCGTCGCCGGCGAGAACGAGTCGA 177653 30 100.0 34 .............................. ATTCGGTCATCCGACTTGGGGACCGGAACAACTC 177589 30 100.0 36 .............................. CCAATCAATCGACCTCATGTAAAAGTCTATTACGGC 177523 30 100.0 33 .............................. CGTCGGTGTGTGGGTCCTCTCCCTCCTCAAACG 177460 30 100.0 37 .............................. GCGGAGGATGAACTCAAGAAGGCGTCGGAGCCGGATG 177393 30 100.0 34 .............................. CCGAATCGGAAGCGCCCTTCGCGGTCGACGCCGT 177329 30 100.0 35 .............................. GGCCAACAATTCATCCCGCTAATCGCCAACGCCGT 177264 30 100.0 39 .............................. CAGCGGATCGTGAACTGTTCGCCGCACTCGGGGCAAACG 177195 30 100.0 36 .............................. GGGAGGTAGGCCTATGCACGCACGAGGACCCCAACG 177129 30 100.0 34 .............................. ATGGACCTACGCGTTGGACCGGAAGACTATCCGT 177065 30 100.0 37 .............................. CACTCTATTTGAGGTCATCCCTCAAGCCACCGCGCGG 176998 30 100.0 37 .............................. AATCAAGCGCGGAGCCGTGTGGTCTCGACGGTGAATA 176931 30 100.0 35 .............................. TGGGGGTACGTCTTACATCCGTGGCGGGACTGGCG 176866 30 100.0 36 .............................. CTCGCTGCTGTTGGTCTGAAAGCTGTCCAGCCCGCG 176800 30 100.0 37 .............................. CCCGACCAACCGGGCTATGACGAACCCGAGGACCCCG 176733 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 100.0 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CACTTGAACGTACCGTCCAGCATCCCGCGCTTGACCGAAAGGTGAGCTATCAGTATCTGCTCCGTTTGGAAGCGTACAAGCTGAAAAAGCACCTTCTGACTGGCGAGGCCTACGAACCGTTCGAGCGGTGGTGGTAGTAGCGTGTACGTCGTCCTCGTCTACGATATGGAGGCCCACCGGACCCAGCTGATGCTCAAACTTGGACGACGATATCTCACCCACGTCCAGAACTCCGTACTTGAAGGCGAGATATCGGAGGGAGACCTCCAACAGTTGCGTGGCGAGATAGAGGATGTTCTCGTGCCTGGTGAGTCGGTTATAGTCTACGAACTCTCCTCGGATAGCCTCTTGAACCGGACGGTCTACGGACAGGACCCAACTGAGGATAATCGTTTTCTCTGAGCAGTCGACCCCCAGGGGTAAATCAGCTATTCAGGGTCGACCGAAGAACTATACTGTGAACGGCCACTACGGCACGTATGTCCGCAATATCGGACATG # Right flank : AGCGCGAGCAACTCGTGATCACGCTGGTTGGCCGGCACTAACGACTCAGGAAATACCCTCCGTCGCCACCGTCCACCTCTTACCAAACATTAGAACAGCGTATCGACTCAGATGTTAGGTAAGAATGCGGCGGCCACCGTACCTCGATCCCTCCAAGAATCCGGGACCGCGAACGAAAGCAGTATTAATCGCCGTTATCGGCCCCGCCGTCTTTCAATAACACTACAGAGGCGCTAAGGAAGACCCAGATATACTCTACAGGCTAAAAGATTGATAACAAAACTGAGAAAAGAAGCCTCATGCCGGAAAGCAGCATTCCTGGTGGACCACCAGTACTTCCTCTGCTCATTCTTCTCGCGGTCGGGGGCGCTCTCGGGATAATCTATACGACAATCAAAGAGGACACCATCAAGGAAAACCCAGTCCCGCTAATCGGGAGTATAGCCGTCGTGACAGGGTTCGGCATCACTATTCTCGAAAACACCTCGAATACACCGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 188928-187724 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZWE01000002.1 Halococcus sp. IIIV-5B NODE_2_length_234216_cov_16.7218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================================================================== ================== 188927 30 100.0 36 .............................. GTCTAGGCTCCGCGACTGCGCTCGGGCTTCGGCGTG 188861 30 100.0 34 .............................. ATCCGGACGAACTCGCCACAATACTCACACCGGA 188797 30 100.0 36 .............................. AGATTCCGCGGCGAGACAGCGCTCAGGATGTCCGAA 188731 30 100.0 33 .............................. CCAAGCGAGACGCCTTGAGTCCGGACCCACCGC 188668 30 100.0 36 .............................. GACCGTCCTCACCGACGACATCAACGAGCGTATCGG 188602 30 100.0 35 .............................. CGTCTGGACCGTTAGTCGTCCGCGACCGCCTTAGT 188537 30 100.0 34 .............................. GTCTAGGATTAGGCCGCCCTCCGTCTCTATGCGG 188473 30 100.0 36 .............................. GACCCGGGTCGGACGGAACGTACGTTATCGTCACGC 188407 30 100.0 34 .............................. CCGTGCCCGGACGCTCTCGGTACTGGTACGCCGA 188343 30 100.0 37 .............................. GTGCTCGAAAACGGCCGAGACATGATGCTGCTCCCCG 188276 30 100.0 36 .............................. AGATATACGACGAGAGTCGATTACCGTGGTACGATA 188210 30 100.0 33 .............................. GACGAACTCTCGAAAGGTGACGAGATACCTATT 188147 30 100.0 37 .............................. CGGCGGCTCCGGATGCGGGAGTTTCAGCGTCTCGCCG 188080 30 100.0 36 .............................. GACTACGGCGAACATCCGAAGAACGTGATGGAGATC 188014 30 100.0 35 .............................. CGGGAGAGGGAGTCGCCCTCTCGATCGAGCGCGTC 187949 30 100.0 34 .............................. ACTACGGTAGGCTCTCGCCTATTAAGCTAAGACC 187885 30 100.0 102 .............................. CCGACGACAAGCAAGAACGCGAGACAGTCCTCAATTTTCAGTTAAGCCATTGTGGAATTGAAACATCCAGTGGAGTACGTCTCTGTCCAGACGAGTGACGAG 187753 30 76.7 0 ...T....A.G.T.T....A..C....... | ========== ====== ====== ====== ============================== ====================================================================================================== ================== 18 30 98.7 39 GTTACAGACGAACCCTCGTTGGGTTGAAGC # Left flank : GTGACGTATCCGATTCACAGTACTACCAAGCGATCTCGCGCGTTCGGAATCGAATCCAGGAAGAGACACCCAGCGATATAGAAGTACTTGAAGAGCACCACCCTGAGCTACTTGCCGAACTCCGAGAGGTTGTTTGTGAAGATACCGATGAGTGAGTCTCTCTTTCTGTGAACTATGCCAAACTAGGAATAGTTCCGGAGAGGACCAACAACTTGTAGCAGCCTTGGGAGCTATACGCACCGCAGATCCAGTAACCGTAGAACGAAATCAAATAGCTTGTCCACTCAATGGTGACAGAGTGACCAGAAGGGGTACCTTTTCAACACCACTCAGATGCCATGCTTACGATATGCAACTGGCACGTTAGTTTTGGCTGCGCCTTTCGATACTCGGTTCAATGAAATCGTCGACCCCCCAGGTGAGACGAGATATTGGAGGTTGACCGAAGAATTATATTCTGAACGGCTGATACGGCCTGCATGCCCGCCAAATTGGGCATG # Right flank : CGTCGTATGCAATGAAATCGCTAGGTCATCGGTCCTAAATTAATATTCACAAGGTTGAGACGACAACTGGTTGCCCGTATGATTGCTCGAATTCGCTGGTTGAATAATACCTGGTGGAAAAAGTGAATAATACGTCATTAAGAAGGAGGAGTTAAGTAAATACACTTACTCCTCCAGTAGAGGGAAAGGTTAAATAGCTCCCAGCTATTGTAGGTAATATGGATCGCATATAACCACCTGCCCACGGGAACCAACCACCACAGATGGTTGGTTCGGACCCTGGGCACAACGGAGTAGGACCGTTCACAAACGTCCTTACGGACGCGAAACCAAATAGGGCCTCAATAGGCATACACACTTCGAAAATGTTTCAGCAGAACGCAAGAATGCGGTTGAAGCCCTCTTCTGGATGAGTATGTGTATGCCAACACACTGTTTCAGCCGAACCTCCGTTGGAGCCAGAATAATCTTTTCTCCGACACCCGAACAATTATTAGCAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTCGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //