Array 1 2309-2840 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JXMH01000024.1 Haemophilus influenzae strain RMHi93 ctg7180000001675, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=====================================	====================================	==================
      2309	    37	 100.0	    33	.....................................	AAAAAGTCTTCAACACTTGAACAAACGCCTTTC   	
      2379	    37	 100.0	    34	.....................................	CCTGCTATTTTGTGCAATTATCCCGATTTAATAG  	
      2450	    37	 100.0	    33	.....................................	AACAAATGACTATTGCATCAGTAGAATTGTTAG   	
      2520	    37	 100.0	    35	.....................................	ATTTGATTGTAAAACATATTTTGCAAGTTCATCTT 	
      2592	    37	 100.0	    36	.....................................	TTTAAACGTTCTACTTCAATTTGCACATCATCTTTA	
      2665	    37	 100.0	    33	.....................................	TTTTATAAGTTCGCATTTCATTTCAAAAATTCC   	
      2735	    37	 100.0	    32	.....................................	ATAGACATTACCGCCAACTTGCCACACTTTGA    	
      2804	    37	 100.0	     0	.....................................	|                                   	
==========	======	======	======	=====================================	====================================	==================
         8	    37	 100.0	    34	GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC	                                    	       

# Left flank :   TAAATTCTAGGAAGAAAAAAATGGCACAATATTTAATTGGTTACGATATTTCCGATCCTAAACGACTACAACGGATTTATCGTCGAATGACAAATTATGCGACCCCCATTCAATATAGTGTATTTATTTTGGATGGCACAGAAAAACTACTTAAGCAATGTTTAGCAGAGATTATGTTAATTTTCCACAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGGCTCAATGGCGACTAGGTAAATCAAGTTTACCTGATGGGATTTACTGGACGGCCTTGCCTACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTTTGCTAAAATATACCGCACTTTTGGCTGAGTTTTGAAAAAAATAAGAATGATAAAAATTGTTCAATATTTAATCAAATCAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGCA
# Right flank :  CGAATGGGAAGTATTATAATTTTTACTAACTAAACGAGGAAAACAAAATGAGAAAAATCGAACAAAAAATGCTAGATTGTATCCAATTCGGGCATAACTTAAAACTAAATAATACCAAAGTTTTATGGCACAACGGCGAGCTAAGGGTCTATTTGCACGATTACTGTATAATTCATAAAGTAAAAAATAAAATCACGTTAAAAAAGGGGCAAATTCTAGGAAATGATGAACCTTTCATCTTAAAAACTCTTTTTAAGTTTGATCACAGGGTTTGAAAATGGGGGTTACTTTTAATGATAATTTTTAAAATTTGGATCGTTGGTTTCTTTTCGTTTCATCTTTTGCTTTATTTATGGGCTAGAAATGAAAGAAAAAAGCCCGATCCTATATTTGACAAAATAAAAGCGGTTTATCCGATCGTCAAGATTAAAAATAATTTATTCTATTTTAACGGTGCATATATCACGCCCGATCTGATAATCTACAAAACGCAAAAAATA

# Questionable array : NO	 Score: 3.26
# 	Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:51.35%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-5.50,-3.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.37,0.27   Confidence: LOW] 

# Array family : NA
//