Array 1 629901-632113 **** Predicted by CRISPRDetect 2.4 *** >NC_006448.1 Streptococcus thermophilus LMG 18311, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 629901 36 100.0 30 .................................... GAGCTACCAGCTACCCCGTATGTCAGAGAG 629967 36 100.0 30 .................................... CGTTCCTTTTTTCAAGGTAATCTTTGAAAG 630033 36 100.0 30 .................................... AAGTCCGTAAGCACCAGTTCCAATCGTCAT 630099 36 100.0 30 .................................... TTGAATACCAATGCCAGCTTCTTTTAAGGC 630165 36 100.0 30 .................................... AACCTCATACATGGGGAAAATTGGTAAGTA 630231 36 100.0 30 .................................... TAACTTCATTAGTGTAGTTGTAATTAGCAT 630297 36 100.0 30 .................................... TTAGCTACCCAAATATCTTCTGTTTTCCAA 630363 36 100.0 30 .................................... GAGTTTTCAATATTGGCACAGGAGACAATT 630429 36 100.0 30 .................................... TGATACTATTTTAGTCAGATATGAAATATC 630495 36 100.0 31 .................................... TCATCAATGTTTAAAGCCCAACAATACATGA 630562 36 100.0 30 .................................... TAGATTTAATCAGTAATGAGTTAGGCATAA 630628 36 100.0 30 .................................... AGGAAAATAGCATGAGCGTACAACAATCTA 630694 36 100.0 30 .................................... TGTCTATCACGCTTCCTAAGTGCATGAAAA 630760 36 100.0 30 .................................... ATGTCACCAATCACTAAAGAACCTACGCTG 630826 36 100.0 30 .................................... AACATCTTCCTCTCCGATTGCAAATAGTGC 630892 36 100.0 29 .................................... CATATTTGGTGCCCGTTCGATAAAGAGTA 630957 36 100.0 30 .................................... CATTAAATCGCTTGAAGCAGACATTGAAGC 631023 36 100.0 30 .................................... GACTTATCTTGGAAGGTAGTGAAGGCACTT 631089 36 100.0 30 .................................... TCCTTGCCATCTGCACTGTAAGCCCAAGCA 631155 36 100.0 30 .................................... TAGTACGCATAATCAATTCATCAAGCTTGA 631221 36 100.0 30 .................................... GTAGTGACCCAAAATTCTATGACCTTGAAA 631287 36 100.0 30 .................................... AGATTGTGGTGCTTACGGAAAATTCCTTGT 631353 36 100.0 30 .................................... TGGCAAGAAGTGTAAGAGATGCAATGGATA 631419 36 100.0 30 .................................... TTTATTATCATTATTCTTCTTCCCAAGCGT 631485 36 100.0 30 .................................... TTTTATAGAATTTGGTGGTGAACTTTTTCA 631551 36 100.0 29 .................................... AATGGGTCACAGATTGCCATAATAAGGAG 631616 36 100.0 30 .................................... CCGAGGTCACTTTAGAACCCACAAAATAAG 631682 36 100.0 30 .................................... ATGAGAGAACACAGTATAGACCCTGATACA 631748 36 100.0 30 .................................... CAGTATTAATGAGGTTTGGGTGGTCATTCC 631814 36 100.0 31 .................................... CCATACTCTCTATCAGTTCATTTAATTCTTC 631881 36 100.0 30 .................................... TAATATGTCGCTCTACTGATTCCAAAACGG 631947 36 100.0 30 .................................... ATGAATTACATTCATGATTTTATCGAGTTT 632013 36 100.0 29 .................................... CGTGCCATTGTTTCGGTCGGACGTGGGCA 632078 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAACATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATGTTCTCAGACACCTGATAAGGAACTATTACAGAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACATCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGATGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 863999-864323 **** Predicted by CRISPRDetect 2.4 *** >NC_006448.1 Streptococcus thermophilus LMG 18311, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 863999 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 864071 36 100.0 35 .................................... TTTGAATAGTCTTTGAATCGCATTTGAACCATATA 864142 36 100.0 38 .................................... AGGTTTTTTGCCATAGATTTTCCAAGACCTTCCCAACT 864216 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 864288 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 96.7 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATTCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAAGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACAGTATTGATACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //