Array 1 2406673-2405652 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054496.1 Flavobacterium columnare strain F2R74 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2406672 36 100.0 30 .................................... TTTCTAGCTTTAGTCACCTCATCTTTTGAA 2406606 36 100.0 30 .................................... TCTGAGTACTGAAAATTATAGCCATTGTAA 2406540 36 100.0 30 .................................... TTTTATGTTTTTGACCGTAATCAAAAGATA 2406474 36 100.0 30 .................................... CGATTAATTTTAGATAAACCAAGAACTTTG 2406408 36 100.0 29 .................................... ATGATAAATAAGTTTTGTATGATGATGTA 2406343 36 100.0 29 .................................... ATTTCTTTTAGTCTTATTCTTTTCTTGAA 2406278 36 100.0 29 .................................... CCTGCTGTAATTGCTGTAATTGCTGAATA 2406213 36 100.0 30 .................................... AGTTAGATTTATATCAAGTATTTTAGCCTG 2406147 36 100.0 30 .................................... TCTATTACAGTGTAATATTCTTCAGGTATT 2406081 36 100.0 30 .................................... ATAAAATCCATTTTTTCAAAATAATTTAAA 2406015 36 100.0 30 .................................... GCATTTGATATTTTATAATTGTTCCGATTT 2405949 36 100.0 30 .................................... TCTACTGTTTTTATTAACTTGATAAACAGT 2405883 36 100.0 30 .................................... GTTTTTTGAATAAATAGTTCATAATCGTAA 2405817 36 97.2 29 ....A............................... ATTTGAGATTGGTGGATTAGCCTTATCAT 2405752 36 100.0 29 .................................... ACGCCTCTATTTCACGTTTATGGTAAAAA 2405687 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 97.9 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAGGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTGTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGATCCATCAAACCATTTGGAAACATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2975673-2973279 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054496.1 Flavobacterium columnare strain F2R74 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 2975672 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA TAATA,T [2975658,2975669] 2975600 36 100.0 30 .................................... ATTTTATTTTTTTCAAAGGTCAAGGATGGA 2975534 36 100.0 30 .................................... ACAAATATAAATTATGACAACTTTATCATT 2975468 36 100.0 29 .................................... TAAATAAAAAAAGTTTAGTAAAAGTTTAG 2975403 36 100.0 73 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG 2975294 36 94.4 30 T.....A............................. AATGGTCGGACAACCTATATACACCTTCTT AATAT [2975282] 2975223 36 100.0 30 .................................... TAAATCATCAGTAGTTCGTATTGTGGATAT 2975157 36 100.0 30 .................................... TTTAGAGTGCAATACGGAAATTTCCGAGTA 2975091 36 100.0 30 .................................... AAAAATTTGTTAAAGTTTTGTTGAAAAGTA 2975025 36 100.0 30 .................................... TTATTTTGAAAAAAATTCAATTATAGGGAT 2974959 36 100.0 30 .................................... CGAGCTAATTCTTCAGCTAAACGTTGTTTG 2974893 36 100.0 30 .................................... GCTGGTTTGAGAAACGAAGGCGAGGTCTTT 2974827 36 100.0 30 .................................... TTAGTAATCAAAATTAATTTTGAATTGCAT 2974761 36 100.0 30 .................................... TCACGCTTTAAGATTGCGTTCTTACGAAGC 2974695 36 100.0 30 .................................... ATGGTGCTGAGTAATTCATTACTCATAAAC 2974629 36 100.0 29 .................................... GTAAACAAGTTTATTATACCTGGCACGAT 2974564 36 100.0 30 .................................... TAAGCCGTGGGGTTCGATCCCGACACCGAA 2974498 36 100.0 29 .................................... GATATAAAGAGGTTGTACAATAAAACCGA 2974433 36 100.0 29 .................................... ATTTTTCAATTCACCGTGGGTCGCCACCC 2974368 36 100.0 30 .................................... AGAATGTAGAGATTTATTAAATGAAATTGA 2974302 36 100.0 30 .................................... TCACGCTAAAAATAATTTTAACATTGATTT 2974236 36 100.0 30 .................................... CAAATCACAATCATTTGAGATTGAATAGTG 2974170 36 100.0 30 .................................... TTATTGCCGGAACACCAGCGAATGAAGTAA 2974104 36 100.0 30 .................................... GAAAGAAGCTAAAGCGATGTTAAGAGCATT 2974038 36 100.0 30 .................................... ATATCTTTTCTTTTACAGGAAACAATAAGA 2973972 36 100.0 30 .................................... CAATTTTAATTTATGACTGAATTTGAAATG 2973906 36 100.0 30 .................................... AAAACCATAAGAATTATTTAAAAAGTTACC 2973840 36 100.0 30 .................................... CTTTTACAATGCACGAAATTGTAGAAAATG 2973774 36 100.0 30 .................................... TGGTCAAGCAGATTCTGTAGAGAAACTTCT 2973708 36 100.0 29 .................................... TTAAAAAACAAATTAAATCTTGAAGACCA 2973643 36 100.0 30 .................................... ATATAAAACTAAAAATAAATTTATAGTAAT 2973577 36 100.0 30 .................................... ACAAATAGTTAAATCCCAGCCGTTGTATTG 2973511 36 100.0 29 .................................... CTAATGGATTATTCATTGACGTAATTGAT 2973446 36 100.0 30 .................................... ATTATTAAACTACTTAATTTCCCATCTCTA 2973380 36 100.0 30 .................................... GCAACAACCCTCCGAACCAATACCACCAAA 2973314 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 36 36 99.8 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //