Array 1 2126156-2126732 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGNL01000001.1 Klebsiella pneumoniae strain NCTC9184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2126156 28 100.0 33 ............................ CCTTCGCGCACACCATCAGATTCACTTCTGAGG 2126217 28 100.0 33 ............................ TAAAGAGCCCTTCATTATCCCACCGCTGGTCGG 2126278 28 100.0 33 ............................ CTGGACGCCGCAGGGCTTATGCTGCACGATGTG 2126339 28 100.0 33 ............................ CTATCACGCCGTCGTAAACTTCTTTGAGGTGTC 2126400 28 100.0 33 ............................ TACTCAGTGAGTGAGAGGGTTTGAGTATCGTCA 2126461 28 100.0 33 ............................ CGAGCTCATTCAGTCGCTGGAGTCGGCGGGCGA 2126522 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 2126583 28 89.3 33 ............C.........G.G... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 2126644 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGACTCTATCCT 2126705 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.9 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTTGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2135486-2137099 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGNL01000001.1 Klebsiella pneumoniae strain NCTC9184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2135486 28 100.0 33 ............................ TTTTTATTCAAGCGGGGCATAGAGGTGTTCAGG 2135547 28 100.0 33 ............................ TGTACAGCAAAAGAGCAAGGACGTGGTCATGGC 2135608 28 100.0 33 ............................ TGGAGATCTGGCAGTAAAGGGAGTTTCTGATGA 2135669 28 100.0 33 ............................ CCGGACGTTTATCGTTCCCCTGAAAGAGCTGTA 2135730 28 100.0 33 ............................ CGCGTGGTGGACTGGAAGGAGTATTACCGGTTT 2135791 28 100.0 33 ............................ TTGCGGCATAAAGCGGTCGCGTTCGGCGTTATA 2135852 28 100.0 33 ............................ CCATGCTGCAGATAAATGACTGGATGGGGGAAG 2135913 28 100.0 33 ............................ CCTGGATCCGAAACCCCTCCCAGGCGCTGCGGA 2135974 28 100.0 33 ............................ AACCTGAAAAGGTCAAATTTATAAAGGATGAGA 2136035 28 100.0 33 ............................ CCCAAAAGCCATAAATTCTCCTATTGTTTCCAG 2136096 28 100.0 33 ............................ CAGCGCTCCGCCGCAAAATCACGCGTTGAGGCG 2136157 28 100.0 33 ............................ CTGGACGAGTCATTGAGCGGGAGATACGGCGGA 2136218 28 100.0 33 ............................ CGGAAAAGGCCATCAAGGTCATGATCCAGGAAA 2136279 28 100.0 33 ............................ TAAACTGCCGCTTATCGCGTTTGCGTGGGCTGA 2136340 28 100.0 33 ............................ TTATCTACCCAGGAACTTCTTGCTTGGCAGTTT 2136401 28 100.0 33 ............................ TAAAGCGTTGTGGTGATAGCCATCAGCTAATTT 2136462 28 100.0 33 ............................ CCAGTATTCGCGGCTGGCTGGTGGCAAATGTTG 2136523 28 100.0 33 ............................ TCGACTGGCGCTCACGGAAAACGGCAAGGTCAA 2136584 28 100.0 33 ............................ TGCCCTCGAGTCGGAAAAAGCTATCGACCGCGC 2136645 28 100.0 33 ............................ TTAGCTCAAGTAACCCTTCTTCAATCATGCTTG 2136706 28 100.0 33 ............................ TCGCGTCATGGTCCATGCTGTGGATTTTTGCCA 2136767 28 100.0 33 ............................ TTAATAATGGATGCTGGCGGCCTGGCGGGCTTC 2136828 28 100.0 33 ............................ TCAGCAGGCAGGACGCGCCCCACACCAGCGGCG 2136889 28 100.0 33 ............................ CTGACGAACCAGCGAGGCGGCGGTGCAGAAATA 2136950 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 2137011 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 2137072 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATATTAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //