Array 1 21146-21418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPW010000001.1 Gilliamella sp. B14448G7 NODE_1_length_389941_cov_146.684301, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21146 29 100.0 32 ............................. CCCCCGCAGTGAATCACCCCCCGAAGAAGTAC 21207 29 100.0 32 ............................. TCTGACGCAGTAGTATCTGATATTGATAATGC 21268 29 100.0 32 ............................. CAGGAAAGATGTAAAAAAAAACCTTAGTGAAA 21329 29 100.0 32 ............................. GCCCTGACAGCTCTTCTGCCTTGAACATCACC 21390 29 82.8 0 .............A..........TGTA. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGTTCCCTGTATGCACAGGGATAAACCG # Left flank : GCTTATTGAAGAAGTTTTGTCTGCTGGTGGTATAAAACCGCCTCTACCACCTGATTATGTCCTGCCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGGAGCCGCTAATATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGTGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGGTACCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : GTTAGATTAATTAGGTAAAATAATGAAAAGCCTTTAGCTACAAGGCTATAAGCATATACTCTCCTTAAAGTCTTAATAACGTTTTAACTTTATTTCTTTACCAATATAGGCATATATTCACTTTTATATTTTTATGAATATAAAAAATCGAATGAGATTTATTAAAAATCTTAAATAGTTATGAAGTTCATTTTAAAACATGAATATTGAAAGTAACTGTTAACTAAACTAATAATCAAAAATAGCGTACAATAGAGCGTTATTAAACATATGATCATCATAAATAGTTTAGGAATTTAGCATGACAGGCAAATTTATTGTCATTGAAGGTCTTGAAGGTGCGGGTAAAACGACAGCAGTTAATACCGTTGCTCGTATTTTGAATCAATATAACATTTGCGATTTACAATTTACTCGTGAACCAGGTGGTACACCAATTGCTGAAGCATTACGCAATCTTATTAAAAATGGTTTGGATGATGAACCTTTGACGGATAAAG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229185-229036 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPW010000001.1 Gilliamella sp. B14448G7 NODE_1_length_389941_cov_146.684301, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 229184 26 100.0 35 .......................... CCGCAGCCTGAGATATGTTTTTTATCCTCATAGCT 229123 26 100.0 36 .......................... CCGTGTTACAGTTTCAGTACCATTTGCTTTATCTGC 229061 26 88.5 0 .......................TTT | ========== ====== ====== ====== ========================== ==================================== ================== 3 26 96.2 36 ATGTTCCCTGTATACACAGGGATAAA # Left flank : ATGCGCTAACATCAACTTTATAGCATTAATTATGCCAATAATAAAAATACTCGTTAAATCAAAACAATTTGCTCAAAAAACAAACCAAAAAGTTGGTAAAAATTTTAATGTACTTACTTTTAATTATAAAACAAAAAGTTATAATTAGAGTGTTCCCTGTATATACAGGGATAAACCGCACCACGTAATATGTTCACCGTTTTGACAAACATGTTCCCTGTATGCACAGGGATAAATCGGCGGGCGTTAATATTACATAGCATTTTTTGCTATTCAAAAATCGCAATTCTATATTTTATTGTTAACCATTTTTTAACTGCATGAAAAATATAAATTTATCGGCAGAATCCCGTAGAATCTAATTTTAATTTCCATTAGTTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTGATAAAAAATAGCCAAAAAAATCGGTAGAAATTTGTTGGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TGTATTATGCAAGATTTTGCTAATTTTTGTTAAAAAGTTTCAGGTTATGCCTACGTTTCAGTATAAAAATATAAAAAATTAATCTAGTTAACTGATCAATTATTTGATGGATAGCAATACGTTATCAAGAGACATAATAACTAATGTATTAAAACCATACTTCAGCAAAGTGAACAGTTAAAGTAACGTTTTGTTAGTTCTTGATGTTCATTGGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGATCCGATTTGCAGCGTCGTTATGGAGAAAAGATCTATAAATTAACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGTGTTGGCGGTTGCACTTTTTGTAATGTTGCGTCAATTATCGATGAATCTATCCAAGTCAAATCTATTTCTGACCAGCTTGCAACCCAAGCGCATCAAATGAAAAAATCAAAGCGTTATCTTGC # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.52%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1217-1610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPW010000022.1 Gilliamella sp. B14448G7 NODE_22_length_28230_cov_132.572286, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 1217 26 100.0 35 .......................... CCGCCTTTTTGAATTCGGGGGAAATTGCATTTGGT 1278 26 100.0 35 .......................... CCGATGTCGACAAAAAATTAGAGGATGCGCAGGAC 1339 26 100.0 35 .......................... ACGCCGTTATCTCGTGAGGGGCAACTGTCAAAGTT 1400 26 100.0 36 .......................... CCAGGCGAATGGTGCTGTAGCGACGGCTATTCATGA 1462 26 100.0 35 .......................... CCGCTGGATCAGTGGGCTGACGTTCGAAATGTTCA 1523 26 100.0 36 .......................... CCGTATTTTTACATCAGGTGTGCAGGGAATGAAAAA 1585 26 96.2 0 .............G............ | ========== ====== ====== ====== ========================== ==================================== ================== 7 26 99.5 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ATCCAAAATAAAACAAGAAAATTATTTTAATAAATAATTTTCTTGTTTTTATCTTTTACCCATAAGGGAATATTATCCTTTTTTATTCAACTTTTAATTAGGAGAATGTCCAAGTTAACCAACGAATACATACTTCTTTCAACAGAATATTTCCTTGCTTTAATCAATTGTGAAGCAACTATACCTGATGATGTATCATTAAGTTCAAATGTTCCCTGTACACACAGGGATAAATCTTTGATGCGTCAATATTACATAGCATTTTTGCTATTCAAATAATTGCAATTCTATATTTCATTGTTTAAACTTTTTTTAATTACATGAAAAATATAAATTTATCAGTAGAATTCCGTAGAATCGAATTTCAATTTCCATCAATTTTAATTAATCAAATAAAAACATAGTGTTATAAATAATGATTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTTGTTAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : ACCGCAACCATATCAACAACGAGTTATTGCCGAGCGCGACGAATTGTCGGGCAAATTAGCGAAATTAACTGAATTTATCAATTCAGATCGTTTTACGGAAATAGTACCGGATGAGCGCGAACGCGATAGATTGATTTTGCAAAAATCTATAATGACGGCATATTTGGACGTTTTAAATTACCGTATCGATGCATTTAAATAATTATTCGCATCTAATGCATAAACTATCAAAATTTCTCAGAGTTTTAAATTTAAAACTACATAATTAATCAAAAAGCGAATACGCTAAAGAAATATTACAAAATATCTGGTGCAACACCTAATTAAACGAGGAATGTCAGTGAAATCAATGACATATTGTCAAAAATTAGTAAATATAAGGCTGTCACGGCATTAACGAGTCAGGCGCCAACAAATAGCTAAATATTGGTTTACACTATTTAACACAAAAAATCAGACTAACACAACTATATTGTATAAACTACATACATATTCACAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4450-4659 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPW010000022.1 Gilliamella sp. B14448G7 NODE_22_length_28230_cov_132.572286, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 4450 26 100.0 35 .......................... CCGTTACTAATTTCGTCCGCCATACCGATTTTAAT 4511 26 100.0 36 .......................... CCGGACGATAGCAGCGATAATCTCGCCCGTGCAGCA 4573 26 100.0 35 .......................... CCGGTTTCGAGCGGAGCGGACAGGGTGCGAGTAAT 4634 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 4 26 100.0 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TTTCAGTATAAAAATCAATAAATAATTTATTTTAACTCTATGGTTATAAACAAAATACCATGTTGAGCTGAAATAAACGTTTATTTCTAATATTAAGTAATAGATCACAAAAAACAACGCTTATAAAATTATTTTCATTAAAAAAATATATTGGATTACGCAAAATTACAGAAACGCACTTACAAAAAACGAGTACTTGAGATTAATTTGTGAAAATTTTATAACCAAGCTAAATCAGCAAACAACTTAAAAAGTAGAGTTATTTTGATAACAGTAAAGTATTAAAAACATCTCAATAAAAATTACTGTTTTTTAACTACATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCAAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATAAAGATTTTGATAAAAAATAGCCAAAAAAATCGGTAGAAATTTAGCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : ATCATATTAAATTAGAAGTTATTATCTTTATAAGAATGGATTTTAGATATTATTTATACGATATAGTGTTGATTGATAATAGTTTGTTTAAAGTATTATGTGATAAAATTATAATATAAATGAATTTTCAATTATCAGTATGGAGAAGCAACTAAACTCATAAATACCTAGTTATTTTACTGATTATGCTCAATAGTGCTTACAAAAATTGTTTAGTACATGAATATCATCCTAACTTTCAATAAATTAATTTAGGAAAATCTTTTTTTAAAAGTGGATAATAATTAATTCACCTAACTGTTTCGGCGTTTTTTTATTGCTCAACTCATATGAATAAAATACTATTATCAAAAATAAGATCTAATGTGTAAAAGAATTTAATTATTTTATCATCTGTTATTATTCAATAATAAATGGAAGTAAAGAATGAAAAATTTAATTGCTATTTCAATATTAACTTTGATCGGTTTCAACTCTTTTGCTAATGAGAATGCAAAAAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 6303-6694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPW010000022.1 Gilliamella sp. B14448G7 NODE_22_length_28230_cov_132.572286, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 6303 26 100.0 35 .......................... CCGCTCAAATAGATGAGGCAAAAAAATTCGAAAAT 6364 26 100.0 35 .......................... CCGTGCTGAGAAAAGCAAACACAGTCGTATTTATG 6425 26 100.0 35 .......................... CCGGCGCCCCTCTACAGCATTATCTAGAATTAATG 6486 26 100.0 35 .......................... CCGCTACTGGCAAAAAACACCGCGACATCAGGTGA 6547 26 100.0 35 .......................... CCGCCGAGAAAATGGAGAATTTGAAGCGAGGTAGG 6608 26 100.0 35 .......................... CCGTAATGGAATTGATTCTGTACTAATCCTATCCT 6669 26 76.9 0 C..........T..T........TCT | ========== ====== ====== ====== ========================== =================================== ================== 7 26 96.7 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AAAAAGACTAATTTCTAGGTTAGATTAGTCTAGAAAAGTATTTCTTATACATATAGATAAAACAGCTTTATTTGTAAATTAACCTAATTAAGGTTATTGGCATATGCATTAATTTATCACTTATCTATAATAATATACGGTTTTTTGTATTCCCTGTATTCACAGGGATAAACCGCGCCATGTTATTCCCCCATCGTCACATGTCTGATGTTCCCTACACACAGGGATAAATCGGGGGATGCGTCAATATTACATAGCATTTTTTTGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTATCATTTATTTAATTGCATGAAAAATATGAATTTATTGGTAGAATTCTGTAGAATCGAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGATAAAAAATAGCCAAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : TTTATTAAGAAAGTTCTGGCCGGTCAATCTTCATATCTCATGCCTACTCAGGGGGATTTTTATTCTGCAAACTTATTTTTGTGATCATATCGATTGTAATGGATAGCATCACTTATTAAGTAGTTGTAAATTTCATCTACAATTTCTATCCCATTTTTTAAGTAATCCGCTTCACGTTTTTTGCCTCGTTCACCAGGAAAAAAGACTTCACTATTACCTTTGGCGGGTTTAACGTGTTTTAGTTGATCTAGCATGGCTGACATGTTCTTTTTGAACGTTTCAAGACCGATAAAATAATCGGGATTGATAACAATATGCAAATGTCCAAGATCGCGTCCTTTAGACAAGTCGGCATACATGGATGAGACGTTTTTGCCAAATGGTACACCTAATAAAATGCCTGACAACACATCCACCATCATCATTAGCCCATAACCCTTGGCATCCGCTATTGGTAATAGAGCGTTGACTTTGTGTGGATCGGTTGTTGGTTCACCTTG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 802-225 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPW010000032.1 Gilliamella sp. B14448G7 NODE_33_length_1448_cov_131.597946, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 801 26 100.0 35 .......................... CCGTTTGGCGACCGTGAACCAACTCCCCTTAAAAC 740 26 100.0 35 .......................... CCGCATTTAATCACAGCTAATTTGCACGGGCAGAA 679 26 100.0 35 .......................... CCGCGTGTCGTAATTGAGTAAAGAGGAAATAAATA 618 26 100.0 35 .......................... CCGGATAAATCCAGTTCTGATATTCTCAGCTGTTT 557 26 100.0 36 .......................... CCGCCGACTGGTCACAGCGACGGATTTATCCTAGGC 495 26 100.0 35 .......................... CCGTATTTCCTGTCGAGTTGTAGATGAACTTGCTC 434 26 100.0 35 .......................... CCGTGAACCTCATCCCCAGCCGCCATTTTTGCCAC 373 26 100.0 36 .......................... CCGCTGAATCTCCTAAGGTTCAATCTAATGGAGGAA 311 26 92.3 35 .A...........G............ CCGACAAATTGGTTAGTCGTGATGTCGTTACTGAA 250 26 92.3 0 .A...........G............ | ========== ====== ====== ====== ========================== ==================================== ================== 10 26 98.5 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GATTTCGTTCATTCGCTCCCTACCAGAGTTCCCTGTATACACAGGGATAAACCGCATTAACCAGTAAAATGGGGCTATTATCTCGCGAGTTCCCTGTATACACAGGGATAAACCGATAGCACCGCTGTCGGGCTGTTGGCAAAAAACGAGTTCCCTGTATACACAGGGATAAACCGAAAAAGAAATAGCTAATAGAGATGAAATAAATGAGTTCCCTGTATGCACAGGGATAAATCGGCGATGCGTCAATATTACATAACATTTTTTCTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTTTATTTTTTAATTATATGAAAAATATAAACTTATCGGTAGAATCTCGTAGAATCTAATTTTAATTTCCATAAATTTTAATTAATCAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTGAAGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : ATCGGCGATGCGTCAATATTACATAACATTTTTTGTTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTTTATTTTTTAATTACATGAAAAATATAAACTTATCCGTAGAATCTAATATTAATTACCATCAATTTAAATTAATCAAATAAAAACATAGTGTTATAGATTGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTGACGGTCAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1338-1065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPW010000032.1 Gilliamella sp. B14448G7 NODE_33_length_1448_cov_131.597946, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1337 29 100.0 32 ............................. AAAATCTGATTTCGTTCATTCGCTCCCTACCA 1276 29 100.0 32 ............................. CATTAACCAGTAAAATGGGGCTATTATCTCGC 1215 29 100.0 32 ............................. ATAGCACCGCTGTCGGGCTGTTGGCAAAAAAC 1154 29 100.0 32 ............................. AAAAAGAAATAGCTAATAGAGATGAAATAAAT 1093 29 93.1 0 .............G............T.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GAGTTCCCTGTATACACAGGGATAAACCG # Left flank : CAAATAAAAACATAGTGTTATAGATTGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGG # Right flank : GCGATGCGTCAATATTACATAACATTTTTTCTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTTTATTTTTTAATTATATGAAAAATATAAACTTATCGGTAGAATCTCGTAGAATCTAATTTTAATTTCCATAAATTTTAATTAATCAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTGAAGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGAGTGTTCCCTGTATACACAGGGATAAACCGTTTGGCGACCGTGAACCAACTCCCCTTAAAACGTGTTCCCTGTATACACAGGGATAAACCGCATTTAATCACAGCTAATTTGCACGGGCAGAAGTGTTCCCTGTATACACAGGGATAAACCGCGTGTCGTAATTGAGTAAAGAGGAAATAAATAGTGTTCCCTGTATACACAGGGATAAACCGGATAAATCCAGTTCTGATATTCTCA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 152604-152812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPW010000006.1 Gilliamella sp. B14448G7 NODE_6_length_154090_cov_135.085627, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 152604 26 100.0 35 .......................... CCGTAACCGCCAAATAGGCGGTTTTTTATTGGAGT 152665 26 100.0 35 .......................... CCGCAAAACAAATGCCGTCAAAAATGGCTGAATTT 152726 26 100.0 35 .......................... CCGGGCATTGCGACTATTGAATTTAGTAGCTCTGT 152787 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 4 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TTCAGTATAAAAATCAATAAATAATTTATTTTAACTCTATGGTGATAAACAAAATACCATGTTGAGCTAACATAAATGTTTATTTTTCATATTGAATAATAGATTACAAATAACAGCGCTTATAAAATTATTTTCATTCAAAAAAATATATTGGATTACTCAAAATCATAGAAATGTACCTACAAAAAACGAGTACTTGAGATTAATTTGTAAAAATTTTATAACCAAACTACATCAGCAAACAACTTAAAAAGTAGAGTTATTTTGATAACAACAAATCATTAAAAACAGATCAATAAAAATTATCATTTATTAACTGCATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCTAATTTTAATTCCCATCAATTTTAATTAATTGAATAAAAACATAGTGTTATAAATACTGATTTTGATGAAAAATAGCCAAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : ACCGAAATTGCATCGATTAATAACTTTTTTAATGGAAATTACTATCTGTTCTTAGTGATACGTTTTGTTATTTATGCATTTTTTATTTGTCTCCTTATTAAATTTAAAATAACCATAAAAACTAAAGTCAACTCACAACTGTTTTTTAGAACTAGCAAATTGTGTTTTTTCTTAATTTGTTTTAATGAAATAATGTTGTTTATTCGGATGGAGTAAAAAATGTCTGCTATGAGTTTCTTTGACTATGTGATATTGTCACTTGGATGGTCTATCAATAATGGACTATGGAACATTATATCTATGTCTGGCATTTTTATTTTGCCCTAAATATTTAAAATGATTAGCATCATTATTGATGTTAGAGACAAAGGGGCGCTTAAAGGAGAACATACAAATATTATTGTTACTCGATTAGAACAATATATTTATATAAGTATTGTCGTAATCTTTTTTGTGTGTTATCCATCAATTAGTCTTGATATTAGAGTGCTACATTATGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.40,-10.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 54020-54354 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPW010000007.1 Gilliamella sp. B14448G7 NODE_7_length_151643_cov_132.309862, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 54020 29 100.0 33 ............................. TGCATTAGGATCTCGCTCAGTTGCTTTTTGAAC 54082 29 100.0 32 ............................. CAGCCGTAAAAATCCACAACTGGGTAAAATCA 54143 29 100.0 32 ............................. TGACGCGGAGATTAATTTTTGCACTTGCCAAA 54204 29 100.0 32 ............................. TTCGAGTCGATCGCCTTTCCAAAATTTATTCA 54265 29 100.0 32 ............................. TTTGCAGCGGTAAAAACTACCTGATCGAATCA 54326 29 82.8 0 .A...........G............ATA | ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.1 32 GCGTTCCCTGTATACACAGGGATAAACCG # Left flank : ATTTATGGTGGGGTTTATAACTTATTTGACAAAGATGTTTCAAACGCTGACTTTGGTAAAACTTTAGAAGGTCGACGTTACTTTGTGGGTACCGAGATTAACTTCTAAATAAATTGAACTAATAAATATTTTTCTGTGAAAAAAGATGGCTGTTTTAACAGCCATCTTTTATTTATAGTAATCTAACTATTTACACCCTAAATATAAAAGTCACTTGTTGAACCTGCCATAACGTAACCTAGTGCAATATCACATAGCATTTTTTTGCTATTTCAAAAATCACAATTCTATATTTCATTGCTTACAATTTTTTTAATCATATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTAATCAAATAAAAACATAGTGTTATAGATTGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGG # Right flank : ACAAAACTACTACAAACCGCTCGCATGGAGGTTTCTCATTGCCAAAGTCTATTAAATAACATACCATTGCAAAAAAACATAAAGAATAAGGAAATGGTATGGAAAAGATTATTTATTGTTTGTTGTTATTCCCATTTTTTGTATTTGCTGATGATTTCTATAATTGTAAATATGCAATGGGTATTGAAACAGAAGAAAATCTAAACTATTTGGCGAATGGAACTGTTCGGGTAACCAATGATAGATTTGTTGCTCAAGATTTAACACACAAGGAGCATAAATCGCCTAAATTTACAGAGTTTACAGAATTTGCAGATAATTTATCTATTGCAGAGGACTCAGAGAAAGTATATGTTCTTGCAAATGATAGAACAAAGTATGTGATTACGACTAAAATAAGTAATCTTGTTTTTAAATGGGGTAATTGTACTCTTGATTTATCTATTGACTTCGAGAATGAAAAATTTGGTAACAAACCAGTAAATTTTTTTCCTAAGATA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56138-56407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPW010000007.1 Gilliamella sp. B14448G7 NODE_7_length_151643_cov_132.309862, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 56138 26 100.0 35 .......................... CCGATCACCCCCTATTTTTGACCAACAACGTCGAT 56199 26 100.0 35 .......................... CCGTTGAATTACGGAAATACGGCGAGATAAAAATT 56260 26 100.0 35 .......................... CCGACAGCGCAGGAATAACACGCGGTCTAGCAAGC 56321 26 100.0 35 .......................... CCTGATAACGGATTGACAATTTCGGCTGGGTGGGT 56382 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 5 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CAAAAACTAAAGATTTTGAGTTCTCTCTAGCTGGCTTTGCAAAAGCATTTAAAAAATTGCAAAAAAATTGTTCTACTAACTAATCAATGTTCCCTGTTCGCGCAGGGATAAACTGAATTTGACGTAATACGTAGTGGTTTATCTCCTATGTTTCCTATACACAGGGATAAACCGCGCAAGTTTCAATGGGCATTCCGCCCACTACGATGTTCCCTGTGCACACAGGGATAAATCAGCAGGGCGTCAATATTACATAGCATTTTTTGCTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTCTATTTTTTTAATTGTATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTACATTAATTTTAATTAATCAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAAATATCCAAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : ACCGTAATGAAAATTTAACGACATTCAAATAATGGAAAATGAAGCGTTAAGAATTAGGCATAAATCAAAGTGATCAATTAATTATATTGTGTATAATTTAATTACTTTATTTATTTCAGTTGTAACTATTTGGAACTTCAGTGTTAAAAGATGAAAAGAGATTGGGAATTAATTAGAAAAATAATGCTAGCTATAGAAGACTCTCCATGTGATATGAAAATATCGTCATTTTCGATTAAAGGCTATGATCCTGAGATTGTTGGTTATCATATAAAACTACTTAATGATGCACGTTTAGTTGAAGCCATTAATTCAAGTAGTGATCGAATGATGTATGAATATTATGCTCAAGACTTAACGTTAGCAGGACATGAATTTTTAGATAATATTAGAAGTGATACAAATTGGAACAAAATAAAGAATCTTATTAAAGGTAAAGGTGGTGAGTTAACCTTTGAAACCATAAAAGCGGCAGCTTCTTATATGATTGTAAATTTGTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 64412-64620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPW010000007.1 Gilliamella sp. B14448G7 NODE_7_length_151643_cov_132.309862, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 64412 26 100.0 35 .......................... CCGATTAATGCGCGACAGTGCTTTCGCTCACCCTA 64473 26 100.0 35 .......................... CCGTGGCTAAAATTGTTAGCCAATGTTACCGCTTT 64534 26 100.0 35 .......................... CCGGGGCGTCTGTATTTGACCGAGCATTCATTTCT 64595 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 4 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ACATTTAAATTAAACTTAAGGTGAATTTAATTTCACCAGAAGAGTAAATTATGATAATCATGACCATACAATTACTAAAAAAGTTGATATTTGTATTGGTTGCCGAGAAAGTCAGGTATTTCCTCTATATAGGGGTAAAATGTGTCAAAAAGTTTCAGGTTAACCATACGTTTCAGTATAAATATCAATAAACAATTTAGCTTAACCTTATGTTCCCTGTACACACAAGGATAAATCGGCGGGCATCAATATTACATAGCATTTTTTGCTATTCAAAAATCGCAATTATATATTTCATTGTTTACCATTTTTTTAATTATATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATGTAATTTTAATTTCTATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAAAATGTGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGA # Right flank : ACCAATATATTCTATAGATAAAACTCGTTATTATTAATAAGAACAATATTGTTAATTTAGGGATAATTTTTCAGGTAAGCGTTTGAGAATGATAACTTAAAAAAATTATAAAAAATCTTTTAAAAAAGGGATTTAATTATCATAAACCAAATGATATGGTTGATTTCTTGAATTTTCGGACTTTTCCCAAATCTTATTGGTCTCACGATAATTTTTTGTGTATCAAACAATTTATTTTGTTAGAAATGGTACTCAAATATGATTTATTGCCAATTTCGAAATTAACCAAGAAAAAAATTATAATGATAAAACATTTATAAGTTACATCAAATTATTTGCTAAATCTAAAACGTCGAAATTGAGATAATGATTTTTAGTTGAATTAGTTAATGAAGTAAACAATTTAATTAGTTCTGTTAACCAAATAATTACTGCAATAATAATTCATGATGATAATAAATTACTTTTAGCAGAGAAAATAAGAGATTTGCTTAATAAAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //