Array 1 30261-31430 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYCA01000019.1 Escherichia coli strain D038f NODE_19_length_75821_cov_167.797, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30261 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 30322 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 30383 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 30444 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 30505 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 30566 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 30627 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 30688 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 30749 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 30810 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 30871 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [30895] Deletion [30912] 30913 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 30974 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 31035 29 96.6 32 .......T..................... TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 31096 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 31158 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 31219 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 31280 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 31341 29 100.0 32 ............................. GAGCCTGACAAGACTACTGAGGCCGTTCTGTC 31402 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATTGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTAATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56979-57983 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYCA01000019.1 Escherichia coli strain D038f NODE_19_length_75821_cov_167.797, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56979 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 57040 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 57101 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 57162 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 57223 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 57284 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 57345 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 57406 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 57467 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 57528 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 57589 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 57650 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 57711 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 57772 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 57833 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 57894 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 57955 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGATTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //