Array 1 231057-229050 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211229.1 Halotalea alkalilenta DSM 17697 Q376DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 231056 28 100.0 32 ............................ ATCTCGAAGCGAACGCTGGAGAAGGAAATCTC 230996 28 100.0 32 ............................ AGATGGTGAACAAAGCCAAGAACCAGCTGATC 230936 28 100.0 32 ............................ AAGCGAATGATCGAGGCGAGCAAGGCCAATGA 230876 28 100.0 32 ............................ TCTAATCGAAGAAGAGCACATCGTCGAGACCG 230816 28 100.0 32 ............................ GACACCAACGTCGAGGACGTGATCGAGGAAGC 230756 28 100.0 32 ............................ AGCCGGCCCTTAACCACCTGGCGCAGCGAGCG 230696 28 100.0 32 ............................ TCGTCCAGCCCCGGTGCCGGAAACCGCACGAC 230636 28 100.0 32 ............................ TACCGAGTGCAGCAGGACCCCCTGCCGCCTTC 230576 28 100.0 32 ............................ TTACCTTTCAGTCGGCAGCGCAGCCGCTTTCC 230516 28 100.0 32 ............................ AGAACTCGAACGACACATTGCCGTAGCCGTTG 230456 28 100.0 32 ............................ AAAACGCCCGAATGCCTGGATCATCTTGCGCA 230396 28 100.0 32 ............................ TACATGTACCAGCTCATCGGCGAAAGGCTAAC 230336 28 100.0 32 ............................ TGCCGGAACACGAGGTCAATGAGCGCTTCCGG 230276 28 100.0 32 ............................ TCGGGCGCGCCACATGAGCATCCGCTTCGGGT 230216 28 100.0 32 ............................ ATGGCCCTGCCCTACTACCCGGCCGAGAAGTT 230156 28 100.0 32 ............................ TCGATCAATTGGATTTTAACGCAGCATGGTCT 230096 28 100.0 32 ............................ GGGTCGACTGGGAACAATCCGGGAACGGATAC 230036 28 100.0 32 ............................ AACCCGAACGTTTAGCGAGACTGTGACACAAC 229976 28 100.0 32 ............................ AGTCTAAGCGCCGCTCAGGCGAGTGCCGCTCA 229916 28 100.0 32 ............................ TTCAACGAGCAGGGCCGAAACCCGCACTTGAG 229856 28 100.0 32 ............................ AGGCGATGGATTGATTACTTGACGCGGAAAAT 229796 28 100.0 32 ............................ TTGCCCCCAGGGCCGGCTGCCTCGAATATCTT 229736 28 100.0 32 ............................ TGCGCCACGTCACGGCCTACCATGTCCTATGT 229676 28 100.0 32 ............................ TGCCAGTGCAGAACCGCAGAACATCATCCGGC 229616 28 100.0 32 ............................ GACACGCGTGTTGCCATCATCCGTGGCACAGA 229556 28 100.0 32 ............................ ATTCTGAGTGCAGGCCAGGATTGAGCTTGGCT 229496 28 100.0 32 ............................ ACCTCGAGAACTATGCGCAGCAGCTGCGAGAC 229436 28 100.0 32 ............................ AAACGATATCGGTCATCAATCACCCCTGGCCG 229376 28 100.0 32 ............................ TTCAACGAGCAGGGCCGAAACCCGCACTTGAG 229316 28 100.0 32 ............................ AAGAGGAGGGCAGCCTGATGCGCCGCGCTACC 229256 28 100.0 32 ............................ ATGCGATTCGAGCCAATCTCCGGGCTCTCGCT 229196 28 100.0 32 ............................ GGTTTGAAACCGAGAAAACAGGGAAGAGTGGA 229136 28 100.0 32 ............................ GGAGAGGCCGTTTGGCACCGTGTCATGCAGAC 229076 27 75.0 0 .T.........TG.-.......A..G.G | ========== ====== ====== ====== ============================ ================================ ================== 34 28 99.3 32 GCTCGCTGCCGCACAGGCAGCTCAGAAA # Left flank : CGGATGTGGCTGAAGACCTCGATCGCTTGGGGCCTTCATCAGCCAACCGGATTCTCGATGTCATCGAAGAGCGCATCAGGGATGGAGAGCCGGACAAGCTGGGTAAACCCCTCCGCGGGCTGCTCGCCGGCTGCCGCCGCATCAGAACCGGCAGCACCAGGATCATCTATCGGATTAATGGAGAAGCCGTCCAGGTATTGATCATCGCGGTTGGAGCGAGGCGTGAAGAGGAGGTTTATGCATTAGCCGAGAGGCGCGTATAGGCAACCGCAGGCGCTTTGGCCCATGGCTCAATACGCCTGGGGTCGTGGTGGGGTCCCGATCGAACGCGACGATGATCAGCTTGCCCCCTGTTTCACAGGTCCAGCGACCCTCTTTTTGTTAGGCTTCAGGAAAATATTATAAAACAATGTGTTACGGATCTTCGGTCAAAAAGGGTGATATCGGGGATTTGTTCGCATAATGTATATGAATCAATCGATTATATGAATTATGCGCTA # Right flank : TCATCCGGCGCTGGGCCGGATCAGTCGGGTCGAGGTGCTTGCGTTCGATCTCGCGGCGTCAGGCCTCGATGCGATTGATTACGCCGAGGCGGGGACTTTGAACCAGCCCCAGCCTCCTTTTCGCAGGGTCTTGAGGCGATAGAGCGCTTCGTCGGCGCGTTTGAGCAGGTCGTGCAGGTCACGTCCGTCCTGGGGGTAGAGGCTTGCGCCGATGCTGGCGCCAAGCGTGATGGGGCGCGCTGCGAGTGCGAAGGGCCGTGCGAGTGCTGTCTCGATGCGCCAGCAGAGCTGCTCTACCTGTTCGAGGGTCCGTAGATGCGGCAGAAGTACCACGAATTCATCTCCTCCCAGCCGACATACGAGGCCGCTGATACCTACGCTGTCGCACAGCCGGCGGGCGACCTCGGTCAGTACTTCGTCGCCTCCATCGTGCCCGAACCGGTCGTTGATCCCTTTGAAGCCATCGAGATCGATGAGCAGCAGCGCGGCCATTCCTTCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 240758-244150 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211229.1 Halotalea alkalilenta DSM 17697 Q376DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 240758 28 100.0 32 ............................ ACCACCGGCGCCGAAATCTCGGCGTTCGTTCC 240818 28 100.0 32 ............................ AACCGCGCAGTCGATCCGGTCGAGATCGTCAA 240878 28 100.0 32 ............................ ATCCGAAGAGGATATGCGACGACGCGCTGGAC 240938 28 100.0 32 ............................ ATCGACTATTTCATTGAGGCTGAGTCACGCCC 240998 28 100.0 32 ............................ AACACGTGACCTCTACGGAGACTGAAAACTTC 241058 28 100.0 32 ............................ ATCATCATCCTCTAGCCACTTCGCATGCCGAT 241118 28 100.0 32 ............................ TCAACGGTGACTGCGAACATCTCGGTGCTTTC 241178 28 100.0 32 ............................ AGCGAGCTCAACCAGAGCAAAGCGGCTATCGG 241238 28 100.0 32 ............................ ATCTCATGCCCTCGGTGCGTTTCGATGAGTCC 241298 28 100.0 32 ............................ AATGACGTCGGATTCATTGCCCGGCGCAGGCC 241358 28 100.0 32 ............................ ATCTGCAGGATCATGAACATTTCCCGTGTATC 241418 28 100.0 32 ............................ TGTCGCAGATAGTTGTTGTAGGTCTGGGTGCC 241478 28 100.0 32 ............................ AAGAAGTACGAGCAGGAGGTGTCAGGTGCAAG 241538 28 100.0 32 ............................ CGTATATGCGCGAGGTATCGCATGAATATCAG 241598 28 100.0 33 ............................ TAGCGAGGGCCGCTGGCTCAAGGCTATAGGAGT 241659 28 100.0 32 ............................ TTCGTCAAGCCACGACCGACGTGCTGCCCGAG 241719 28 100.0 33 ............................ AGTGCGTCGGCGAACTTGTCGCGCAGGGCATAT 241780 28 100.0 33 ............................ TTCGGGCACGCGGATCTCCGCAACCCGAGATTT 241841 28 100.0 32 ............................ TTCCATCGGAACCGGTTGCGGCTGGGCCAGTA 241901 28 100.0 32 ............................ GAAGAGCGGGACATCACGCCGCCGCGAGACCC 241961 28 100.0 32 ............................ GAGCTGTTTGCCGAGCGCGCACGGCTGGCCGC 242021 28 100.0 32 ............................ CTCGCGCTAGGGCCATTTGGCGGGGCGACGGG 242081 28 100.0 32 ............................ AACGCAAGATCAAAGCCGCTCTTGGAACACGT 242141 28 100.0 32 ............................ TTCATGCGCCGATTCAACAATGTGCTGTTTGA 242201 28 100.0 32 ............................ TGTCTGGTATGGCTCTGTGTCACGGCTGGGGA 242261 28 100.0 32 ............................ ATCACCATGCCAAATAAGATGCCGAGCATGAC 242321 28 100.0 32 ............................ GTTTGCAGTCACTACTCCGGAGCCGTCGATTG 242381 28 100.0 32 ............................ CCGCTGTCCGAACCATGCCTCCATCTGCTTCT 242441 28 100.0 32 ............................ TGCACAATTGAGCCGACCAAAATACTCTCTGA 242501 28 100.0 32 ............................ AGGAGGAGCGACTCGTCCGACAATCGAAAAGC 242561 28 100.0 32 ............................ TGGCTGGCCTACGTGCTGCGCAAGGCGGGCTA 242621 28 100.0 32 ............................ CATTCGCGAGGCGCGCTGCATCTCACGCTGAT 242681 28 100.0 32 ............................ TTGCGCCGCGAAATCGAGCTCGGCGAGCGTGC 242741 28 100.0 32 ............................ TATCGGCAGTACGTGATGAGCGACCTATCGGC 242801 28 100.0 32 ............................ TTGAAGGGGCGAAGGTCACTTTCGCTCATCTG 242861 28 100.0 32 ............................ ATCGATCAATTTGAACAGATGATCGCCATGGC 242921 28 100.0 32 ............................ CAGCAGCTGCAGCAGCAATCCGCCGACCTCGA 242981 28 100.0 32 ............................ AAAGTCCCCTACCCTCGATCGAATCCCCGAGC 243041 28 100.0 33 ............................ GAAGACTGGCGTGATGCGTATCTGAAGGTGTGC 243102 28 100.0 32 ............................ TCACGTTAGCGGGATATTAAAGCAGCCGGACG 243162 28 100.0 32 ............................ AGCCGAAGCGCGCACGTCGCGGCGAGCCTGCT 243222 28 100.0 32 ............................ ATCGACGCTCCATCCGCCTTGGGTGCAGCATC 243282 28 100.0 32 ............................ TGCGGGCCCTGTGGTTACAGGTCGAGATGGTC 243342 28 100.0 32 ............................ TCATCCTGGCGGAGGTAGCGGAACTCGAGTCC 243402 28 100.0 32 ............................ ACCTACTGCATACAGCCGGCCCTGCACGCTAC 243462 28 100.0 32 ............................ GCCGGGCTTTCGCACGAGACTCAGCACCGGAG 243522 28 100.0 32 ............................ GAGCTCCGATCCAGGCTAGCTGCCGCCGAAGC 243582 28 100.0 32 ............................ AGAGGAGAGCCCAGCGGCGCTGTCCAGATATG 243642 28 100.0 32 ............................ AGTGCAACCGCCCATGACTACTATGGCGCGGC 243702 28 100.0 32 ............................ ACCAAGCGATCGACGGCCTCGACCCATGCGGC 243762 28 100.0 32 ............................ ACGCAACTCCCGCTCTATAGGGCGCCATATCT 243822 28 96.4 32 .............C.............. AGTCTGTCTTCGGAGCCGATACGAGCCGCGCC 243882 28 92.9 32 .............C....C......... AACTCGGCGCCCATCATCATCGCGACGAGGGC 243942 28 100.0 33 ............................ TATCGCTGGCGATACCAACATGTTGGCTGCGAT 244003 28 96.4 32 .............C.............. ATGACGATAGAGCGCCCTAGAGCGCCTTACGA 244063 28 85.7 32 .C.......T...C....T......... AACAAGCACCGCCAGGACCTGGCGCAGCACAG 244123 28 82.1 0 .C..........CC.......CT..... | ========== ====== ====== ====== ============================ ================================= ================== 57 28 99.2 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : TCGCTGCAAAGGATGATGGCGCGGAACTGGCTGAACGGTATGCGCGACCACGCCATCATCGGTGAGATGCTCCCGGTACCCGAGGCGGTGCAATATAGAATCGTGTCCCGGCGTCAATTCAAGACCAATGTAGAAAGGCTACGTCGACGCCGTGCCAAGCGGCATGGCGAAACCCTCGAGCAAGCCCGCGCGCAAATCCCCGATAGTGTCGAGAGGACAGTGCAGCTCCCGTTCATTCAACTCAACAGCCGAAGTACCGCCCAGCGGTTCTGCCTATTCATCGAACATGGCGAGTTGCGTCATACAGCGGCTGAAGGAACATTCAACCAATATGGCTTGAGCAACAATGCCACCGTACCCTGGTTTTGACCCTCTTTTTCGGCGCTCACATAGATTTTAGAAAAATCAAAGAGTTACGGCGCCATTGCTGAAAAATGGGCAAGGGGCCGTCGTGGTGTTTTTTCTTCTTAAAATCAGACGGTTATAGGATTTATCGTCTA # Right flank : ACTACCTCGGCACTTGTCCGTTTTCGCCCACCCATAGTCGATATGGATGGGCGGTGGGTGGCCTGGCTACCAGAGGTATCTCAGTGTCGTTCGTACGGCGCGTGAGTCGCCGTAGAAGGCGGCGTTGCTGTAGTCGTTGACGTAGGAGATGTATTCGCGGTCGAACAGGTTGGTGGCGTTGAGCGATAGCTCCAGGTTCTGGTTGATCCGGTAGTTGATCAGGGCGTCTACGAGCGTGTGGGAGCCGGTTTTGCCGGTGTTGGCGTCATCGACATAGGAGGAGCTGACGAAGCGTGTGCCCAGTCCTAGGGTCAGGTCTCCGCGTGAGGCGTCTCCGGGTATGGTGTAGTCCGCCCATAGTGAAGCCAGATGCTTGGGCACCAGTCCTGGTCGGTTGCCTTCGTTACCCGTCAGTCCGTCCTTTTTGATCTCCGAGTCCCAGTATGAGTAGGAGGCGATCAGATTGAGTCGATCGCTCATCGCTATCTTGCTTTCGAGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //