Array 1 62483-60624 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSGV010000016.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
62482 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG
62421 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG
62360 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC
62299 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA
62238 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA
62177 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC
62116 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA
62055 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC
61994 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC
61933 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT
61872 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT
61811 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC
61750 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA
61689 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG
61628 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA
61567 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA
61506 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG
61445 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC
61384 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC
61323 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG
61262 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC
61201 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT
61140 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT
61079 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG
61018 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC
60957 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT
60896 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA
60835 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG
60774 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT
60713 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA
60652 29 96.6 0 ..................A.......... |
========== ====== ====== ====== ============================= ================================ ==================
31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG
# Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT
# Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA
# Questionable array : NO Score: 6.19
# Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG
# Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.41,5.14 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 89126-88182 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSGV010000016.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
89125 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT
89064 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA
89003 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC
88942 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA
88881 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC
88820 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT
88759 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC
88698 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC
88637 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG
88576 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC
88515 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC
88454 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC
88393 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC
88332 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA
88271 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT
88210 29 89.7 0 .A.C........................A |
========== ====== ====== ====== ============================= ================================ ==================
16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA
# Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT
# Questionable array : NO Score: 6.19
# Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.65 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//