Array 1 1649036-1642478 **** Predicted by CRISPRDetect 2.4 *** >NC_011832.1 Methanosphaerula palustris E1-9c, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================== ================== 1649035 29 100.0 32 ............................. CGATACTCGCAGCAGTTGGCGCGATTTACACG 1648974 29 100.0 32 ............................. GAATCCGCCGACGCGAAGATCGAGATCTACAC 1648913 29 100.0 32 ............................. GCCCTCGAATGTGCAACACAGTCCGATACCTG 1648852 29 100.0 32 ............................. TCTTCGACCGGGCCGGGAGTAAAGCAGCAAGT 1648791 29 100.0 32 ............................. GTGCTGCCTCCGTGAATGGGGAACCCTTTGCT 1648730 29 100.0 32 ............................. GAGTAGACGTTGAACTGTTCCCAACTGAAAGG 1648669 29 100.0 32 ............................. AACTGCTGGTTTGGGATGAGAACAAAGAACTC 1648608 29 100.0 32 ............................. GATCCGAGTTAGTTCTGCGGAGGTTAACTGTC 1648547 29 100.0 32 ............................. TAGGACCCACAGTGATCCTCTCAACACCAAAG 1648486 29 100.0 32 ............................. GCATCATTATTGTACCAAAATGCAGTTTTAAC 1648425 29 100.0 32 ............................. TCACAGGGACCTGAACCTGATAATCGGAGACT 1648364 29 100.0 32 ............................. ATTAAACTCAACATCGTGTTTTACCCGGGCCC 1648303 29 96.6 32 ............................A GGTGATAAGGAGATCAAGGCCAAGCGAAAGAT 1648242 29 100.0 32 ............................. AGGACCTGGCTGCTCTGGAGAAGCGGGATCAA 1648181 29 96.6 32 ............................T GTGTCGATCTGTTCCGATTCATTGCAGATAAC 1648120 29 100.0 32 ............................. AGCGGCGATCGAGGGTTGTTGTAGGCTCGGCG 1648059 29 100.0 32 ............................. GTCCAGTCCTGCCCGACGGGTGGCGCAGTCTG 1647998 29 100.0 32 ............................. CTCTTAATCGATCCATCTCCTCTGCGGAGAAC 1647937 29 100.0 32 ............................. GAGATGCATCTCGGGGGATGCAACCGCGTTAG 1647876 29 100.0 32 ............................. AATGCGGATTTTTCCGATCTCCGGTTCACCGA 1647815 29 100.0 32 ............................. GAGACTCATTGGTGTGGGGAATGGGCTCCAAT 1647754 29 100.0 32 ............................. TTTTCTACGATGTCCCCGCCGGCGAGTTCGGA 1647693 29 100.0 32 ............................. ATCACAATACATCACCGACCCTTCATAATATA 1647632 29 100.0 32 ............................. GATCTTGTAGAAAAACTACAGAACAACCTAAC 1647571 29 100.0 32 ............................. AATGGATACCAGATTTATACATTTCAGATATT 1647510 29 100.0 32 ............................. GGGAGACTAATCAGGGATCTGAGGGATGAGTA 1647449 29 100.0 32 ............................. ACATTAGGTCATTTATCCTGAATGACACTGGA 1647388 29 100.0 33 ............................. CACCCGGGGAAGATGGTTTTTGCGCGAATAGAG 1647326 29 100.0 32 ............................. CAGCGCGCCATTCCGATTTCGACGCCGATCAT 1647265 29 100.0 32 ............................. AAATTTTTATTCCCAATACAAAATCTTATAAT 1647204 29 100.0 32 ............................. ATTCTGCATCATCGACTTCAATATCCAAAAAA 1647143 29 100.0 33 ............................. ATTGGGAAGATGAACTTGAACAATGGGGATTTA 1647081 29 100.0 32 ............................. GATCTATAATATATTCTCTACCATAATATGAT 1647020 29 100.0 32 ............................. TTGTCGAACTATTAGACAGCGTTGATATTGAC 1646959 29 100.0 32 ............................. GAAAACAAATATGTAATTAATTTCCTTAGTGA 1646898 29 100.0 32 ............................. ATAAACACTATTAAATTTTGGATCATTAATAT 1646837 29 100.0 32 ............................. TTGCCGAACTATTAGACAGCGTTGATATTGAT 1646776 29 100.0 32 ............................. GAACATATAAATTAATCAACCCCACCATTAGA 1646715 29 96.6 32 ............................T ATGAGATTGTAGTTTCAATTGCTTCATCTATC 1646654 29 100.0 32 ............................. TTCCCATCGACCAGTTTCTTCTGGTTCTGTAT 1646593 29 100.0 33 ............................. ATTCCTCTTGAAGCAGAAATTTTAGATGATAAA 1646531 29 100.0 32 ............................. TAGTTTTAATAGTATATCTATGTTGCGTGAAA 1646470 29 100.0 32 ............................. GATCTACTGTAAACGAAACGGTTGTTTCTGGC 1646409 29 100.0 32 ............................. AATCGCTGCGGAATTTTTCGAGGATGCTAGTA 1646348 29 100.0 32 ............................. GATAACCTGTTCTTTTGGCTTGTTGTGCTTTT 1646287 29 100.0 32 ............................. AACCCTCCGGTCTCAGGATGGTCGGAACCGGA 1646226 29 100.0 32 ............................. TTGGATCTGAGAGGATATATCACAACGGACTG 1646165 29 100.0 32 ............................. GTAGACAGAATGCGCGACGATGATATCGACGA 1646104 29 100.0 32 ............................. ACAACTACATCACAGCCGATGCGTACAACTGG 1646043 29 100.0 32 ............................. ATCTCTGGCGGAGCGTACATACTCCCAACCAC 1645982 29 100.0 32 ............................. TATGACCAGGTGTTCGAAATGCGGGCATGAAG 1645921 29 100.0 32 ............................. GTGGTCAACACAGTCGACGACGAACTGGGCGC 1645860 29 100.0 32 ............................. TCGGAGGTGTCGTGACGGACCCGGAACGACGG 1645799 29 100.0 32 ............................. GATCCGTGATCGAGGTGTCGGTTTTTTTGTCC 1645738 29 100.0 32 ............................. AAAAAACTCACCGGCATACATTTAGTGATGGC 1645677 29 100.0 32 ............................. AGTCAACCACACAGGATACCCGGGACATTATC 1645616 29 100.0 32 ............................. ATCCGGGGCGGCGGGTTCGTCATTGACTACGC 1645555 29 100.0 32 ............................. GCACTAAATACAAAGCGTTACTATGAACTTAT 1645494 29 100.0 32 ............................. GGAGCGAAACCATGAATCCCTGCTCAAATTTC 1645433 29 96.6 32 ............................A CAGCCGGCACAACTGCGGCACCCCGGCCGGCA 1645372 29 100.0 32 ............................. TCAGCAGAGCCTCCCTGACGTTGGTGATCCCC 1645311 29 100.0 32 ............................. GTTGCCGTTCCGAACTCTGCGAGGTTCTGTTG 1645250 29 100.0 32 ............................. GCAGTGGTCGTAGAGGGCTTCCGGCAGTCCGG 1645189 29 100.0 32 ............................. CCCGCTCCCTAATTTTTCCGAGCGGTCGCGCA 1645128 29 100.0 32 ............................. AGATTACGCCGATGCTCGTTTCCAAAGTCCAT 1645067 29 100.0 32 ............................. TCGACGACTGCAATCGACGAGACCGAGCATCA 1645006 29 100.0 32 ............................. CCGGCACCGGTGCGATCCCAACCGACAATCTC 1644945 29 100.0 32 ............................. AGCCCAATCAGCCCCGCGAGCATCGTCTTCAG 1644884 29 100.0 32 ............................. TCACAGGAGCAGCCGATCCATGTTTGGATTGG 1644823 29 100.0 32 ............................. TGTCGTCAGATTACAACACAGTTAAAAAAATC 1644762 29 100.0 32 ............................. GCGATCGGGTTCGCCCCTTTGACAGTGACGCC 1644701 29 100.0 32 ............................. ATCATTCAGCATTCCTCTCCGGATCGGTCAGA 1644640 29 100.0 32 ............................. ATACAATGGGTAGAACATTTTATACTTTTTCG 1644579 29 100.0 32 ............................. TTGGTCGGGAAGCCGACGAAATACCGGGATGG 1644518 29 100.0 32 ............................. AAACGGATGGCTCAAGACCATCAGAAGGGTCT 1644457 29 100.0 32 ............................. AACCTCGCCCTGGTCGGGGCCAACTCCGCCGA 1644396 29 100.0 32 ............................. ATCGTTGAGAACCTCGCACCGACCCCGACCGG 1644335 29 100.0 32 ............................. GCTTTCTGATCCTTCTGCCCGAACGAGAGCCC 1644274 29 100.0 32 ............................. TGCCGTCAGCCTTGGCAGCGGTGTACTTCGCA 1644213 29 100.0 32 ............................. TCTCCGCTGACGAAGGGCTTGATTGAGCAGAT 1644152 29 100.0 32 ............................. TTCCATTTGGAGTGAATTTCCCAATACAATGC 1644091 29 100.0 32 ............................. TATTTCCATCTCCAAAATCCCAGAGCCATGAT 1644030 29 100.0 32 ............................. ACGGGTATATTTCGGTATTTAACACAAATACG 1643969 29 100.0 32 ............................. GGTACTTGATCGATACAGAAACCTATCAGATA 1643908 29 100.0 32 ............................. CAGTTCTGGTAATGATTCACTTTGAATTGTTT 1643847 29 100.0 32 ............................. ATTTACTTCTCTACAGGCATCAGCCACAAGAG 1643786 29 100.0 32 ............................. GTCTATGAGGGAGCGCCCCAATCGATCCATTT 1643725 29 100.0 32 ............................. GAGCACACAGAGGAACCCTCCAATCACACCAC 1643664 29 100.0 32 ............................. TCCCAGGCTCGAGGTCAGTGAAATACCAGACA 1643603 29 100.0 32 ............................. CTTCTTGACGATCAACGCGAACATCGACAATT 1643542 29 100.0 32 ............................. ATCGCAGAACAGTTTATCGAAATGCTCAAATC 1643481 29 96.6 32 ............................T ATATCCTCCCCAAAGCAATCAGAAGGGGGTTC 1643420 29 100.0 32 ............................. AGGTCGAACCGCGAGATGTGTGAAACACTCAG 1643359 29 100.0 32 ............................. GATCACGGCTGCGCTCAGTGAGGAGTTCGGAG 1643298 29 100.0 32 ............................. AAAACTGCATCATTAATCAGATGGACGCTGTA 1643237 29 100.0 32 ............................. GCTCGGGCGTTTGCACAACGGGAGATCGCGAA 1643176 29 100.0 32 ............................. GAGTGCTCATAGTTCCTCCTCACCCAGGATGA 1643115 29 100.0 32 ............................. TTTAATTGCATCCGCTCCACCAGATTTATGTG 1643054 29 100.0 32 ............................. AGTACGCTCAGGATACGAGGATCTGGAGGGAG 1642993 29 100.0 32 ............................. GAGCTGCGCCTCGACGAACGGCACAGTATGAT 1642932 29 100.0 32 ............................. TTCAACCCGTCGGTGTCTGCAGATTGGCGGAA 1642871 29 89.7 154 ..................A........TA AGATTCCGGGTCATTGTGATACTCATGGATGGCAAGTTCCACACATCTGGGAATGAACTGAGTAAAGTATAGAAGATGAATTGATTAACTAATATTACCTCACATATGAGGGGGGGTGAACCATTAGCGAACCGATGTGATCACCAAATCCTAA 1642688 29 82.8 32 ...........GCTT........A..... ATACACCATTCGAATGTTTTGATATTAGTATC 1642627 29 93.1 32 CT........................... TATTAGTATACAAGGAGTGAAAAAGAATGTCA 1642566 29 100.0 31 ............................. ATTGATGTTTCTGAACATAAAAATTTATTAT 1642506 29 82.8 0 .G.....T......T.AA........... | ========== ====== ====== ====== ============================= ========================================================================================================================================================== ================== 106 29 99.4 33 GAGTTCCCCACAAGCGTGGGGATGAACCG # Left flank : TGAAACCTGCGATCCCAGTGGAGAAGGGGTTGGGCGATGCTGGTCATCGTGGTTGAGAATGTCCCCCCGCGGTTGCGGGGGAGACTCGCGGTGTGGCTGCTGGAGGTGCACACCGGAGTCTACGTCGGGGACTTCTCAGTGAAGGTGAGGGATATGATCTGGGATCAGGTTTACGAAGGTGTCGATGATGGAAATGCTGTAATGGCCTGGAGCACGAACAATGAGTCGGGGTTCGACTTTGTCACCGTCGGGCCGAACCGGCGCATACCCATCGAGTGCGACGGATTGAAACTGGTCTCGTTTTTGGCACAGGCCGTAGATAGAGATGAATGAGGAGGTTTATCTGGATGCATATCCTGATAGAATATGATCAGATGAGATCTGATCAGAACCTGATCATGACAAAGAACCATGGTATCTCAAATTCTATTGGCAGTCGATCGCAGCCGGCACCGGTAGGAAGGAACTGAGTTTCCCCTTTTCAGTATATAATGAGAAGA # Right flank : ATATACCATTCGAATGTTTTGATATTATTATTTTGTTCCCCACATTTGTGGGGATATAATCCCGCAATAAATCATTCCTTCAATTCGGAAAACCACGTATATACTCCTGATTTATGCCATAACCAAGCACCGTCCCGCTCGCCACAAAAAACACACCACCACCCGAACCCCCGCCGGCGCCCGAACGGGATCACGACGAAGCCGGCCCCTTCACACCGTCGTCCTTCTCCTCGAAATCACCGTGGCCCGCCCGGGGAACCGGATGCGATCCGCGGGTGATGTGACAAGGGAAAAAAAACCTAAAAAAAAGTATGGGGAAAACTCCCCATCATTCAGTGCAGACCGTTACCGGAGCAGAGGATCCAGCAGACTGTTCACCTCGTCATCCGTCAGGTTGTAGTGGTAGAACTTCGAATAGAACTCCCGGGTGAGCGCCGGCATGTTCGTATCGGTGAACTTCTCGGGGTACAGGATCTTCGCCGTCCACGGGATACCGAGGA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACAAGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCACAAGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //