Array 1 63835-64173 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912096.1 Halonatronum saccharophilum DSM 13868 HalsacDRAFT_HSE.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 63835 37 100.0 37 ..................................... AATGTAGCAGTTGAGGATAATAGTTTATCTCTGTCGC 63909 37 100.0 41 ..................................... AAGATCAAACATTCCACATACCTTTTCGGCCAACTGTCCAG 63987 37 100.0 39 ..................................... TGTACCCAAGGGGTTCCATCTCCTACAGGCTCACCATCT 64063 37 100.0 38 ..................................... AGCAACTGCTTTCAGCCAAGCAATTGTTTCGCCTTTGG 64138 36 89.2 0 ..............................-...AGA | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 97.8 39 CTAACAATAATCATAATTCCGCTTAAGGAATTGACAC # Left flank : AATTGAGAGTTGAAAGATTAAGAGCAAAGGCGTTTACGCTGACTAAGTTCTGATAAGAGCTGACAAGTTCCCGACAAGAGCATAAAGAATAAAAAACAAAAAAGGTCTAGTCAGATTTTAGTCATCTTTTGTCTAGGACCTTGTCTGAGCTAATGCCTTTAATCTTTTAATCCCCTGTTGATTCCAGACTCCTAATTCCCGATTCCAAAAAAATCTTGCATTCCACCCATAAATGGTGTATAATGTTAATAGTGTCAAAAGAAGCACCGCCTTATCAGTAATGGTTCCTATCTCCGACCTCTAAAGTAGCAAAAAAGAGGGGGGGTTCGCGCAAATGGATCATAAGGGAGATAGAGTGAGTATTAGTGAGGATGATAAAGCTAATCAGATCCAGATTTTCGCACTTTTTCTGAGATTTTCAGAGAAAATAGTTCAAAAAGTGGGGGTCCGCGCAAATGCCATTTTGAGCCCAGTAGTTATAAGGGTTCGCGAGGGATGCT # Right flank : AGCAAGGGATAAGGGATAGTTAAAAATTCAAAATCAAAAGCCAAACACCATCACAAAGTAGCACTTGTGATGGTGTTTGGCTTTTTGTAATTAGGTAGTTAGGTGGGTAGGTGTTTGGGAAGTTCTTAACCCATCAACCTAAGGAGTTAAAAATTTAACTCCTTAGGTCTTTAATCAGATATAATCGGCTTTTATTCTCTCTTATCCGTGCCTGACCTTTAATCTTTTAGTCTCTCACTGATTCCAGACTCCTGACTCCCGATTCCAAAGAAATCCTTATCCAGCTAACAATAATCATAATTCTGCTTAAGGAATGAAGAGCAAGGGGTAAGGGATAGAGGATAAGGGATAGTTAAAAATTTAAAATCAAAAGCCAAACACCATCACAAAGTAGCACTTGTGGTGTTATTTGCTTTTTAGTTAATATATAAGTTGAGAAGTTGATATCTTTATAAATATCTAAAGGTGTCTATCTCATTTGAAATATCAAAGATATAAAT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAACAATAATCATAATTCCGCTTAAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 80117-80376 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912096.1 Halonatronum saccharophilum DSM 13868 HalsacDRAFT_HSE.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 80117 37 100.0 36 ..................................... TGTAGCCTTAGGGTCAAATAGTCCACCCTCATACTC 80190 37 100.0 40 ..................................... CTCATTTACAACAATATACAACCAAGATTTCGAATCGTTG 80267 37 100.0 37 ..................................... TCAAATCTTTTTTTCCATTGCTTACTACCCATTACAT 80341 36 89.2 0 ..............................-...AGA | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 97.3 38 CTAACAATAATCATAATTCCGCTTAAGGAATTGACAC # Left flank : GGTGGAGGCTGAGAAAGAAGAGGCTAAGTGGAGTAAAAAATTTGGTAAACCAAGCAAGAGACAGAAGAAGAAGATTAAGAAGATAAAAGGTATTTTAGGTGAGTAGTAAGAGTTAGAGGATCTTCGATAGTATTATCGAAGGTCTTCTTTTATATTTAAGAGAAGAGAACCCTCTCTTTAATTCTTTCCCTGATAAGGAGAGGAGAGAAAAAATCTCTTGCATTCCATCCATAAATGGTGTATAATGTTATCAGTGGCAAATGAAGTGCTATCTTATCGGTAATAGTTCCTATCTCTGACCTCTAAAGTAGCAAAAAAGAGGGGGGGCGCGCAAGTGGAGTATAAGGGAGATAGAGGGAGTATTGTTGAGAATGATGGAGCTAATCAGATCCCGATTTTTGCACTTTTTCTGATAATTTCAGCGAAAACAGTTCAAAAAGTGGGGGTCCGCGAAAATGCCATTTTGAGCCCAGTAGTTATAAAGGTTCGCAAGGGGTGCC # Right flank : AGCAGAGGATAAGGGATAGTTAAAAATTCAAAGTTAAAAGCCAAACACCATCACAAAGTAGCACTTGTGGTGGTGTTTGGCTTTTTCTAATAGAGGATAAATTTGATCATAGATTAATAAATAGGCATGCTTTATTAAGAGCTGAAATTGGAGGTTGGAGAGGAAGGGATTATCGTCTTTTTTTTGAGAGGAGGTTTTAAAACACTAATTCAAGTAAAAGTGATTTTTATTATTTGATTGGTTTAACTTAATGGGAGCAGATCAAGAAAAGAGTGTTGACCTTTCTTAATTTGCAAATTAAGTTGCCGACATTTTGCCGACATTCTGCCGACAAATTAAATGAAAGCTAATTTTATTTATGATAACTTATGTTATACACGATGCACAAACCCTCTAATATAGAGGGTTTAATGCTTTTAATTTTTAGTTAAGAAATCCTTTAACATAGCTGGGGCTTGGGGTGGATGAGTTAACTTTATAGTTTTAAAGTCTTAATATTT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAACAATAATCATAATTCCGCTTAAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 142944-145491 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912096.1 Halonatronum saccharophilum DSM 13868 HalsacDRAFT_HSE.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 142944 37 100.0 35 ..................................... CAAAATGTGTAGGGACAAAAAAGTGCAAACAAGAT 143016 37 100.0 36 ..................................... GACATAAAAATATAAGTCAATTTCAATTTTCAGATA 143089 37 100.0 37 ..................................... TAAAGATGGTGCTTCTTAGCTTTTTCTTTCCCCTTTT 143163 37 100.0 35 ..................................... AACCAAGAGATTAGAAGATGGAGGATTGCGATTAG 143235 37 100.0 36 ..................................... ATCTCCAAAGCAAAGTATAAGTCTCTGGGTCAACTT 143308 37 100.0 37 ..................................... TAAAGAGAGGTGTCCAATCTAGTAATAGGTTAATTTT 143382 37 100.0 37 ..................................... CTCATCATCCTCAATATAAACTCTAATGCTTCCTCCA 143456 37 100.0 36 ..................................... ATCACCTCCTTAGGAGCAGACCCCCCAGTCTGCTCT 143529 37 100.0 37 ..................................... AAGTTACTATATAATCATTAGCAAAGTCATTAACCAC 143603 37 100.0 36 ..................................... AAAAACTGAAAATAATCTCCTCTGACCGATTATCTT 143676 37 100.0 37 ..................................... ATCCCTCCAATTGAATAATAATCACTTTTTTCTCTAG 143750 37 100.0 38 ..................................... ATCAATGGTACCATAGCCATATTCTTTGGCCTTGTTTC 143825 37 100.0 35 ..................................... ATCGCTCTCCTCTATTTTTCTGATATCATCTTCGC 143897 37 100.0 39 ..................................... CAATTTAGTTTCTCTGCCACCCACCTTGGACAATTGTGG 143973 37 100.0 36 ..................................... GGTGATGATGTGTACGAGGGATTATTTCCAAAAGGA 144046 37 100.0 37 ..................................... TGGCATCAGAAGAGAGATTAGAATTGAAAGAGATAGA 144120 37 100.0 36 ..................................... TGTTTCGTAGTGGGATCGCTGAATATATGAAAAGTT 144193 37 100.0 37 ..................................... ACAATCCTGTAACACTTGCAACCTTTCTCTAGCAGAT 144267 37 100.0 36 ..................................... GTAGTAGTAGTGCTAGTTCTAGACTTGACACCCCAA 144340 37 100.0 35 ..................................... AATAAAAAAGGTGTTGTACTAGGTAAGAAAAATAA 144412 37 100.0 37 ..................................... GAGAAACAGCAGGTAAGTGGTTGAATAAAAGAATGGT 144486 37 100.0 36 ..................................... CTCGACTGTCAGCCGAGGAAAAGGGCGTCTCAAATG 144559 37 100.0 39 ..................................... TGGATAGTAGTTTTAACAGTGAATATGGTGATAATACAG 144635 37 100.0 34 ..................................... TGGGAGTAATACAATGGTTGTTAGGTCTATTAAG 144706 37 100.0 34 ..................................... AAGTAGGCATCGTATCGCCAAATTTTCGTACTAG 144777 37 100.0 37 ..................................... ACCAACTTAAACCATTCTTGGGTAAGATACGCCCAAA 144851 37 91.9 41 .............G..T.......T............ TGAAAGAATAAAGTATCTTATTTGCCCGTCTGGTATTGGTT 144929 37 89.2 37 .............G....AG.T............... TTTTTCATTTTCCACCTCCAAAGAAAAAACCGCCCAT 145003 37 67.6 114 .............G....AG.TCGT.G.TC..T...G AGCGAAAGACCTTTCGTGGCTGTGGTTAGAGATTAGTTTAGGACGGAAGAGTATCTGACAGCCCACAAGGATTGAAACTTGAAATAATTTCCCATTTATGATATAGTTATATAT CT [145026] 145156 37 91.9 35 ..................AG.T............... AGGTAACCTGTCCTCATTCTGTGCGAATCTATCAT 145228 37 78.4 113 ....................CCT...G.TC..T...G GTCAAAAGACCTTCCGTGGCTGTAGTTAGAGAGTAGTTTAGGACGGAGGGGTATTTGACAGCCCATAAGGATTGAAATTTGTGTATTCGTTAATTTCAAATTAAACAGTAATA TG [145247] 145380 37 94.6 36 ..C.....................T............ TTTACATCCCAAATAGTTAATATAATACCCTAAGCT 145453 37 78.4 0 .................G...CT...G.TC..T...G | TC [145474] ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 33 37 96.7 41 GTTTAAATCAACAATCCACTAAAACAAGGATTGAAAC # Left flank : TAATTATCATAAAGATGAGGTAGGGGATTTGATAAAGAAGAAGAAAGTATATACGGATGAGTATATAGAGAAGATATTAAAAGATTTTCCAAATTTGTTTAAGGATAAAGCAGAAGTTTTAGAATGGTTAGTAGGTAATATTTGTAGAGAAGATAAATTAAATGAAAAACCACTTGCTAAGTTAGTTAGGGATATATGTGATGAATTAGAATTTAAATAAGGTATTTAATTAAATTCATTTAGATTGTTATTGACTTAAAAGGTTAATTTTAGTAGAATAGTAGTAGAGTTGTTTAAGAAAAGCTATAAAATTATTGGTGAATAAATATACGGACTTTGATAAAGTCAGTTTTTATAAGGGTTTGTCAAGGGTGTAATTTGACGGCAAAATGGTCAAAAAGGGCTGTTTTGTATAAATATACGGTGCTGAAATGAGTGAGTTAGTGTATCAAGAAATGTTGATGAATCCTTGGTAGAATGGGGTTTGTTCTTCTTGACGG # Right flank : GAGCCAAAGACCTTCCGTGGCTGTAGTTGGAGAGTAGTTGAGGACGGAAGTTTATCTGACAGCCCACAAGGATTGAAACAAGATGCCATGGGCCAACTTTTCAGTATTGTATTTAAGTCTAAATCAACAGTCCAAGACTCTACAGGTCTTTAAAGATCAAAAGACCTTCCGTGGCTGTGGTTAGAGAGTGGTTTAGAACGGAGGGGTATTTGACAGCCCACAAGGATTGAAACACTCTCATGTAGCAAGTTCTATCTTCTGGTGTCTGGAATAGTTTAAATCAACAATCCACTATCCTACAGGTCTTTAAAGACTAAAGACCTTCCTTAGTTGTAGTTAGCAAGTAGACTAAGATGGTAGTTTGTATGATAGTTTAGAAGGTGGGTTTGAAATTAATAAGTTTAAGCACTCATAATCATTGTGGGTGCTTTTTTTATTTGTGTACTTAGCAAAGTAGTTGCATAAAAAACATAATCATATCCAAAATAAAGGGTATTTGC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.41, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATCAACAATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-48] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 43092-42456 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912094.1 Halonatronum saccharophilum DSM 13868 HalsacDRAFT_HSE.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 43091 37 100.0 38 ..................................... TGTCGCATTAGTCATCATCTACCTTGTAATCACTCGAC 43016 37 100.0 45 ..................................... TGGAAGTTGCGAGAGTAGAATAACTGAAGCAATTGCAGTAATAAC 42934 37 100.0 36 ..................................... TAGGGGGGTGATTTCAATGACTGACAAGTTAAAAAC 42861 37 100.0 37 ..................................... ATCCCCCTCCTCTATTTAGTCTACCTCTCCAAACTGC 42787 37 100.0 37 ..................................... CTGTATGGCGTCGCCAAAGTCATCACCCCAATTATAC 42713 37 100.0 37 ..................................... ATTATGAAGATTATCAGGAGATAAGAGGGCGTTTAAG 42639 37 100.0 36 ..................................... TATTCTCCTGGGATATCATTATCTATTATTGAGTTA 42566 37 100.0 35 ..................................... TTTGATACGAGTGGGAATTCAAATGCAGAATTAGA 42494 37 81.1 0 .....................TC...G.TC..T...G | TC [42469] ========== ====== ====== ====== ===================================== ============================================= ================== 9 37 97.9 38 GTTTAAATCAACAGTCCACTAAAACAAGGATTGAAAC # Left flank : AGCGTGAAGTCTCTAAGTTTCAACAGACTCTAGATTCTATACCTGGTATTGGACCAATCTTCACTTCCGGTATAATTGCTGAAATTGGCAATATATCGAATTTTACTGATGAAGCTAAACTAGCTAAATACGCTGGCTTAGTTTGGAATCATAAGCAATCTAATGACTACAAAAGTGATGAAACTGGTATGAGTAAATATGGTAATAAATATCTCAGATATTACTTGATACAAGCTGCCAATTCAGTTAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAGGGTTTGTTAAGGGTGCAATTTAACGGCAAAATGGTCAAAAAGGGCTGTTTTGTATAAATATACGGTGCTAAAATGGGTGAGTTAGTGTATTAAGAAATGTTGATGAACCCTTGGTAGAATGGGGTTTGTTCTTCTTGACGGC # Right flank : GTCAAAAGACCTTCCGTGGCTGTAGTTAGAGAGTAGTTTAGGGCGGAAGTTTATCTGACAGCCCATAAGGATTGAAATTTGTGTGTTTGTTAATTTTAATTAAACGGTAATAGTCTAAATCAACAATTCAAGATTCTGCAGGTCTTTAAAGGTCAAAAGACCTTCCGTGGCTGTGGTTAGAGAGTGGTTTAGGACGGAGTGGTATTTGACAGCCCACAAGGATTGAAATTTGTGTGTTTGTTAATTTTAATTAAACGGTAATAGTCTAAATCAACAATTCAAGATTCTACAGGTCTTTAAAGGTCAAAAGACCTTCCGTGGCTGTAGTTAGTAGAGTGGTTTAGGATAGAGGGGTGTTTAACAGTCTATAAGGATTGAAACATCTAACGCTTCAAAACTGACAAAAAAGCACTCATATATTATTGTGAGTGCTTTTTTATATTTTATGAAGTTGTAAATCAACGGCATAATTGAAATGATAACCAAATAAGAAGGTATTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATCAACAGTCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 58692-58138 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912094.1 Halonatronum saccharophilum DSM 13868 HalsacDRAFT_HSE.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 58691 37 100.0 36 ..................................... GAGAAAGATGAGATAGAGGAAATATTAGAGTTACTT 58618 37 100.0 36 ..................................... CCTCTTGGAATTTGTTTCAAGAGTTAGAAAGTGAGC 58545 37 100.0 36 ..................................... TTACCAACATATATTTTTTGACTAGAAAGATCTAAA 58472 37 100.0 36 ..................................... GAAACAGAAGCAGAAGATTGGAGTTATGACTGGGGT 58399 37 100.0 36 ..................................... TTGGGAATAATGGTGTTAGGAAGTTTGTTGAAATAA 58326 37 100.0 38 ..................................... AAAAAAGCTGGTCGGGTTGTTAGAGATTCTTCAACAGT 58251 37 100.0 38 ..................................... GCAAATGTAGTTCTTAGGATTTTTTCTCTAGTTTCTAA 58176 37 78.4 0 T....................TC...G.TC..T...G | TC [58151] ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 97.3 37 GTTTAAATCAACAGTCCACTAAAACAAGGATTGAAAC # Left flank : GGGATAATTGAGTTAAAGTATATTAAAAAAAGTGAGTATAAAGATAAAGATGAAAAAATAGTTGAAGAGAAGTTTAAAGAAGCTAAAGATCAGATATTAAGGTATAAGAAAGCTGATGAGTTAAAAGAGAGGAAGAATTTAAAGAAGTGGGTAGTTATTTTTGTGGGTGCTAAATGTATGAAGTCGGTTTTAATTGAAGAATAGTTAATGAAACTGGATTATGATATTTACTATTATTCTTTTGCGATTCACTTGACTTAAAAGGTTAATTTTAGTAGAATAGTAGTAGAGTTGTTTAAGAAAAGCTATAAAATTATTGGTGGATAAATATACGAACTTTGATAAAGTTAGTCTTTGTAAGGGTTTGTTAAGGGTGCAATTTAACGGCAAAATGGTCAAAAAGGGCTGTTTTGTATAAATATACGGTGCTAAAATGGGTGAGTTAGTGTATTAAGAAATGTTGATGAACCCTTGGTAGAATGGGGTTTGTTCTTCTTGAC # Right flank : GTCAAAAGGTCTTCCGTGGCTGTAGTTAGAGAGTAGTTTAGGACGGAGGGGTATTTGACAGCCCATGAGGATTGAAATATTTAACTCTGCAAAACCGACAAATTAAGCACTCACATATTATTGTGAGTGTTTTTTTATATTTTATGAAGTTGTAAATTAATAGTACAATTACAATAATAATAACCAAAGCAGAAGGTATTTGCCATTGGGTGTCGAAATAGGACTATAAAGATATTAAAAAATCCCAAATTTATTTCTTGGGATAATCTAGCAAGTGAGGGGTGGCTTGATGAAGCAAAATGTTGTAATTTTATTTGCTGTTAGTCCTGTACAAACCTATATTTATCAATCAAGAAAAGTTAAAGACTTATTCAATAGTAGTGCAATAATAAAAAAGATTGTATCAATTGCTAAAATTAAATTAAAAATCAATGATGAAGCAGATTTAATTTTGCCAAAGATTAAAAATGATAATGTAAATAGTTCACCTAATTATTTTA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATCAACAGTCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 3 62015-60863 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912094.1 Halonatronum saccharophilum DSM 13868 HalsacDRAFT_HSE.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================= ================== 62014 37 100.0 37 ..................................... TAACCATCCCTTGAGCCACTTTCTCGCAGACACTTAG 61940 37 100.0 35 ..................................... AGAGTAGATGGTGAGATGAGGAGTGATACATCACT 61868 37 100.0 35 ..................................... AAAAGTGCTGCTGATTATATTAAAGAAAACCCTTT 61796 37 100.0 35 ..................................... CAAAATTCAAAAAACCCAGCCCTCAATTAAAAGCA 61724 37 100.0 37 ..................................... AATTGAAATTTTGGTTGTCTTTGTACCAAAGCGTAGC 61650 37 100.0 37 ..................................... TAAAGATGGTGCTTCTTAGCTTTTTCTTTCCCCTTTT 61576 37 100.0 36 ..................................... GATAACAAAAGTGAAGTTATTAGAATAGCATTAGAA 61503 37 100.0 38 ..................................... TCATCTAATTCAGGGCTATTAATCAACTCTTTTCTATA 61428 37 100.0 38 ..................................... TTCTTAAATTTGGTGTGTTGGCTTTTGTTCTTTTCTTG 61353 37 100.0 37 ..................................... ATAGAGAGCAGGCTGAGGAGTTAGAATCAATCACCAA 61279 37 100.0 38 ..................................... TCCATCCTTTTTCTACCCATAGATCATAAGGCATCTTA 61204 37 86.5 112 ......................CC.....T..T...G GTCAAAAGACCTTCCGTGGCTGTAGTTAGAGAGTAGTTTAGGACGGAAGTTTATCTGACAGCCCATAAGGATTGAAATTTGTGTGTTCGTTAATTTTAATTAAACGGTAATA C,C [61172,61177] 61053 37 83.8 113 .............A........CC.....T..T...G ATCAAAAGACCTTCCGTGGCTGTAGTTAGAGAGTAGTTTAGGACGGAAGTTTATCTGACAGCCCATAAGGATTGAAATTTGTGTGTTCGTTAATTTTAAATTAAACGGTAATA C,C [61021,61026] 60901 37 83.8 0 .............A........CC.....T..T...G | C,C [60869,60874] ========== ====== ====== ====== ===================================== ================================================================================================================= ================== 14 37 96.7 48 GTTTAAATCAACAGTCCACTATAATAAGGATTGAAAC # Left flank : ATAATGTATGGGATGTTAATTGAAGATAATTATGATATTGAGGTTAATAGAGCTTATCTTGTCTATACTAGAAGTAAGGATAAATTAGTTGAAATTGAGATTAAAAAGGAATATTTTATAGAGGTGAATAGTGTTTTGCAGGAGATAATCAATATTGTAGGTAAGGGATATTATCCCAAAGGAACTTCTTATAAGAGAAGGTGTAGAGATTGTTGTTACCGTAATATTTGTGTTAAATAGAGATTCACTTGACTTAAAAGGTTAATTTTAGTAGAATAGTAGTAAAGTTGCTTAAAGAAAAGCCTATAAAATTATTGGTGAATAAATATACGGACTTTGATAAAGCTAGTCTTTGTAAGGGTTTATTAAGGGTGTAATTTGACGGCAAAATCGTGAAAAAGGGCTGTTTTGTATAAATATACGGTGCTAAAATGGGTGAGTTAGTGTATTAAGAAATGTTGATGAACCCTTGGTAGAATGGGGTTTGTTCTTCTTGACGG # Right flank : GTCAAAAGATCTTCCGTGGCTGTGGTTAGAGAGTGGTTTAGGACGGAGTGGTATTTGACAGCCCACAAGGATTGAAAAATTAAGATTAAATCGTGACCAACTTCTTAGAAGGTTGGTCTTTTAATATTGTTAAAAATAGGATATAATAAAATTGATGAGGAGGTAGATGTAATGAAAATACCTTATGGAGTCAGTAATTTTGATAAATTAAGAAAAGACAATTATCTCTATATGGATAAGACTGAATATATAGAGATATTAGAAAGTTATGGGGAACCTTATATCTTCTTTTTAAGACCAAGAAGGTTTGGGAAAACTTTATTCTTATCCACTTTAGAGCACTATTATGACATAAATAAAAAAGGTGATTTTGATAAATTATTTGGTGATTTATATATTGGAGAGAATAAGACCAATTTGGTTAATAGTTATTATATCTTAAATTTTGATTTTTCAGGTATAAATACATCAACCAAATCTGATTTGCTGGAAGCATTTAA # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-1.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATCAACAGTCCACTATAATAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //