Array 1 289381-288873 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV824231.1 Hafnia sp. HMSC23F03 Scaffold414, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 289380 28 100.0 32 ............................ CATCCGACCGACGACAGTTACCAGTGCGCCCC 289320 28 100.0 32 ............................ TTACCACCGTCGCCGCCGTCGTTCCCGCTAGC 289260 28 100.0 32 ............................ AAGATGATGCAGCGTGGCGGCGTCCACGTCAT 289200 28 100.0 32 ............................ CTCTAAGGCCATCTTGGTAAAACAGGCATCAT 289140 28 100.0 32 ............................ CAGGTCGTCGGGCAGAACGGTTCGCTCTTCGC 289080 28 100.0 32 ............................ GTTAGTGTTTCCACTGGTTGCCTCCGGTGCTG 289020 28 100.0 32 ............................ TGAATTGTGGCGTTGTCATTTGTGCCGCTTGG 288960 28 100.0 32 ............................ ACAAGATGCGTTCCCGCGACGTCACTATGGTG 288900 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTGCGCCGGTCCGTATGCAAGAGACCGGCGCAGTGACAATACCAGTGGATCGCTAATGCGTTTAAGTGATTCAAATGGTTATTGTCAGGTGCGGATACTACAGAGATAACCCTTGTATGTAATAAGGTAGATATTGGCAGCTCTAAACAACAGAGTGGCCAAGTAGTATTAAACCATTTCAATTTCCTCACATACTAGTCATTCATCCGCTTCTTCGAATGTTTCTTCAGGCCATTGGGAAAAATCGGTGGGAGGTTCAATCTGCGGTAGATTTTCTTTGGTTTGCTGAACGTCCCATCATTACCAACGAACTGCCCATCTGTTGTGTATGGGGTATGTCTTTTTGTCGAGCACAGCAAAGTCTAAACAACCCTTTTTTTAGAGCATCTTATAATCCATTGTTTTAAAACACATATTGTGTATGCTCTAAAAAAAGGGGCTTTCAGGGAATTGCTCAGTATTAAGCTGATTAATATAATTTTTTTGTGTATATTTTACA # Right flank : GATTTATCTTGCAAAGGCAAATAGCGGCAGAGTTTATCAAAAATCCTAACTGTTCTTACACAGATGCTTCCAAGGGCGCGATCATTGAGCTGTTTTATATTTTCACTGACACGGTTTCTATCGGAGAAATCCGTCTCACCTGAGAGAGTAGAAAACAACTTATCAGCTTCCTCTTTGAGAGAGATTGGAAGGTCTTTATTTGGATTTACCCAAGCTAGGTAGGAGGAGTAGACATCACGTACCCGTACAGCTAGCGGATCGCCAGAGGCTGCTAAATGGGTTACTGCTTGTCGAAATTTTTCTGTGGCATATTCAAATTTATACTCGTTCACGCACCACTCCTTGAATAAAAGAAAACCCGCACGAGGCGGGTTTCAGTTACTTTCAAAATGCACGTGCACTATACGTGCATTTCTTTGTCTTACTTGGGTCGTTGTTGTGTCCATCCAATTCGCATAAGTTACTGGTTTTTATGCTCTTGTCCGGTCACTGTCCTACCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21320-20450 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV824197.1 Hafnia sp. HMSC23F03 Scaffold183, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21319 28 100.0 32 ............................ AGCATCACTACTGGCGCGGGTGCTATCAGAGT 21259 28 100.0 32 ............................ TCTTTACTTCCGCGCTTTCAAATATAGTTGCT 21199 28 100.0 33 ............................ CGCCAATTGTTAAATATTTAGCATCTGCATCTG 21138 28 100.0 32 ............................ AAATAATTATAGGCAATTTCTGGACAATCATC 21078 28 100.0 32 ............................ TTCTTTGAAAGTGTTTTTTTCCACTGATTGAA 21018 28 96.4 32 C........................... GCCAGTTAAACCCGATCCGCTTTGTTGCCCCA 20958 28 100.0 32 ............................ CGCAACATTTCCCGCAATCGTGGAAACACTGA 20898 28 100.0 32 ............................ ATCAATATCATTTTCATAATCAACTAATCCAG 20838 28 100.0 32 ............................ TGAAATGCGGATTTTGAAAAAATGAGCCTTAT 20778 28 100.0 32 ............................ ACGGCACCAGCTGGGGTGCAAGCAACATTCAC 20718 28 100.0 33 ............................ CTTAACGCCCATATCAGACTCCGGTTATCAATG 20657 28 100.0 32 ............................ ACTAGCACACGTCAACCACTATGCCTATGCAT 20597 28 100.0 32 ............................ ATGCGTAGAGGGGTATGCATGCGGTAGTGATT 20537 28 100.0 32 ............................ AACTGGCGGCGTCGCTCCAATCCACCAGTCAA 20477 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACACAATGCAGCGACATCCAACGGATCCCTGAGAATGTGATGCATTGCACCGTGAGTCGAGTGCAGGTGAAAAGCAGTGCGGAACGACTGCGGCGCAGATCGGTTAAAAAAGGCTGGCTCACCGAGGAACAGGCGCGGGAGCAAATTCTGGATGCCAACGAGCAGCGCACCTCATTGCCCTTTATTTCGTTGAAAAGCCTGTCCACTGGGCAAATGTTCCAGCTGTTTATCCGCCAAGGGAAAGCGCAGCCTCATCCTCAGACGGGAACCTTCAGTAGCTACGGCTTAAGCTCAACCGCCACTGTGCCGTGGTTTTAGTTTTGTTGGTTTTCAACGCCCGCCTGAAACCAGTCGGGCGCTTCAGCTAAAACCCTTTTTTATTGCTTGCTCGTAACTTATTGATTTTCAATCATCATGGATGATGCAAAATAAAAAGGGTTTTATAAAGAGTAATGGGCTATTGTTTTGATTTATTGAATCTTTCTACGATTATTCTACA # Right flank : GTGTTTTCACAAGTTTGTAGCCTAGGCTACAAACTCACTGGCGTTCTTTTACCGCATCCGCAATGATTTAGCCTATCTCAGTCTGCAAAGGCTAATAGCTGGCGCGTGTAGTCTTGAGCGGGATTGGCAAAAACTTCAGCGCAGTTTCCGTGCTCAATCACTTTTCCGTTCCGCATCACCATCACCTGATGGCACAGTGAACGCACCACCTGCAAGTCATGGCTGATGAACAGGTAGCTGAGCTGGTGGCGTTGCTGAAGCGTTTTCAGCAGCGTTAAAATCTGCGCCTGCACGGAGCGATCGAGCGAAGAGGCCGGTTCGTCCAGTATCAATAACCGAGGTTCAAGAATTAAGGCGCGGGCAATGGCAATACGCTGACGCTGACCGCCGGAAAACTCGGTGGGGTAGCGATAGCGTGTTTCTGGATCGAGCCCAACTTCGTTCATAGCGCTGATTACCCGCTCTTCCCGTTGCTGTTCATTCAGCTTTTGGTGTACCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30891-29671 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV824197.1 Hafnia sp. HMSC23F03 Scaffold183, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30890 28 100.0 32 ............................ ATCATCTGTGTCATTTCGTTAGCGCCCGATGC 30830 28 100.0 32 ............................ TATTGCATCCCATAAGCTTTTAACCATTTGAT 30770 28 100.0 32 ............................ GCTGGACTGCTAAAAATATTGTGGCCTTTGAT 30710 28 100.0 24 ............................ NNNNNNNNNNNNNNNNNNNNTGAT Deletion [30659] 30658 28 100.0 32 ............................ GCAAGCAGCAGGACGAAATGGAAACCCGTCAC 30598 28 100.0 32 ............................ TATCAGCATAGACCCGCAAACCGGATATGTTG 30538 28 100.0 32 ............................ ACGTCGAGATTGTGCCGCAGGTGTCAGAGCTT 30478 28 100.0 32 ............................ AGCAGGAACGCCAGAAGAGGGGATCGGCATGT 30418 28 100.0 32 ............................ GCCGCCATAACGACGACCTCCCGCTAGCGCTA 30358 28 100.0 32 ............................ TGACGATATTTTATCTCGCTTCACCGATGCTG 30298 28 100.0 32 ............................ ATATCAGCCATATCTTCTTCGGTTAAGCTCTC 30238 28 100.0 32 ............................ TATCAATAAACTTTGGCGGTGTTGTGGCCGGC 30178 28 100.0 32 ............................ AATTGCCGGAGTCGTGGGATTACTATCCCCTA 30118 28 100.0 32 ............................ TTCACAATAATCAGTTTCACCCCACACTAGGT 30058 28 100.0 32 ............................ ACGCCACCGGATTCTTAGCTGCTTCTCTAAAA 29998 28 100.0 32 ............................ ATCTTAGACTGCCGAGGCATCGCCTCAGCATT 29938 28 100.0 32 ............................ CGATAAAATCAGAGGCTGGGAGGTTAGTGTTT 29878 28 100.0 32 ............................ TGTCGTCTTCCTCAGTCCCCCACTTGGATCCA 29818 28 100.0 32 ............................ CAGCAATGGATAGAGCCCTAGATAATACAGCG 29758 28 100.0 32 ............................ ACTAAATCACTATCAGCAGACAATCGTCACTG 29698 28 89.3 0 ...T........A....T.......... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.5 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TAGGAACGTTGTTGGCACTGGCTTCGGCGCGCAGTGAATGGCCGATGGTCAGCTCAATGTTCCTGTGCATTTTCGCTGCCATGATGTTGTTCCTGTACGCTTCTAGACCCTCCAAGAGCAGTCGCGTAGAACCTGTCTGAGTTTGAGTGCTCGTCTCCCCGTCGCTGAAAGAGGCGGGGAGTTCGTCAATGGCTGATGACTACAGTGTGCTCTGAGATACCCGCGGCAACCGTGTATTGGCCATATCACACAGCTCTAGCATCAGATACGCTGATGCTTTCAGCCACGCACTTATCTGAGCCCAACTCTCCAGCGGGATTTGAACCCCGTTCTCCAGTAATTTGCCTAGACATGAAAATCCGTGGCACAAAACCCTTTTTTCTTACCCACACGTAACTTATTGATTTTATGTGTAGTGCCGAGCTAAAAATAAAAAGGGTCTTTAAACCAGAAATGAGTTACCGGTCTGATTAGCCAAACCTTTTTGCTATTATTCTACA # Right flank : ATATAATCGTGCTAACTATTGTCGGTTTTTGGCGTGAGATTTTCATTTTTTTAACAGAACATCTAACTTAACTAGGTAAAATCCATTGTGAAAAGAAAAAACATTAAAGTTATTTAACATTTTCTGCGTTTTTTATTTTCTATCAAAACAATTAATTAGCTAATTTCATTGATCATGGTTCAGTGATTTATTGTATTTTGTATGTAAATTGAAAAACACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGATAAAAGTATACATATAACCCCAATAACCGCTCTCCCTCCATCGTGGTACTTCCAGAGTAAAAAAATGGAGTAGCGCCATCAAGATCGCGCTTTAGGCTGTTTATTCTTCGGTGTTACCGAAATGTAATAAACAAACTCATAACAAAATGACGATTAAGTCATCAAATAGCCGGAATAGTGCGAACTTAGGTTTACGATGTGAGTTTTTTGTGAAAAAATTGTAGTTAGTTTTTAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //