Array 1 76936-76430 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053108.1 Halomonas sp. TA22 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76935 29 100.0 32 ............................. TTATGGATAAATACTGGCTGGCTAAATATGTC 76874 29 100.0 32 ............................. GAAATGAGTCAGCGCGAACAAATCATCAGCCT 76813 29 100.0 32 ............................. TTTGCCCATGATCTGCGTACACATAAACAGGT 76752 29 100.0 32 ............................. TCATACTGCCGGAATTCGCCCTTCCAGTGGGT 76691 29 100.0 32 ............................. TGCCAGGAGTACGCCCGGACCTTCCCTGAGCA 76630 29 100.0 32 ............................. CTTGGGGAAGAAAGGGTGGAGTATGCCTTAGA 76569 29 82.8 22 .....................TC.C..GA AGTCTTGCGTCACGATCTCGCC Deletion [76519] 76518 29 96.6 31 ............................C CGAAAGGATTGCTCGAGTATCACGTCCGCTG 76458 29 75.9 0 ........TG......CA...C.C...A. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.0 31 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : TACGCCCTGGCAGGTGCGCGCCGATACGCTGCTCGCCTATGCTGCATTGCAGCGTAGCACACTTCCTGAACGCGTCGTCGTATCGCTGATTAAACAATGGTTGAACCATATGCGTCACCGCGACCAGGAAGCGGCCCGTCGCTTCCTCTCGTTGCGACGCCTCACGTCGCTCGATGACCTCCTGGCGGGGCTTCGCCAAGAAGTATCACCATCACCGAGCCTGGTATGAACCATAAAAAAGGCGCCACGTGGATAACGTGGCGCCTCGGGAACGCTGACCAGCTCATCATTTGGAGATGCACAAGCCGGTTGATGTGCGCAATACCAATAAAATTCACCGGCTTATTTCTTGCCTTTACACAAACGAAAAACCCGCCCTTCGATCATGAGGACGGGTAACGATATGGCGCGCCCGGGAGGATTCGAACCTCCGACCCCCTGATTCGTAGTCAGGTACTCTATCCAGCGGCGAGGAGTAGAGCCAATGTCGACCCTTCCCA # Right flank : GATGGCTGTACCATGGGTGCGGGCGACCACCCCAAGCGCGGGGTTCGCTGCCACCCAGACAGCTCAGGCAGGAGTTCGCTGTCGCCCGGCCAAGCCCAACGACAGCAAACAAGTGGCCTATCTCGTGAGATAAGCCACGTCATTACTTAGAACCTTAGAAAGATTCCCACTCGTCGGCCTGGGTGGTCGGCAGCTTGCGCTTTGCGATAGCGGGCGCTGGAGTCTGGGGAAGCTGCTGTGCGCTGCGTGGGCGCGAGGACTGGCTGGCTAGTGTGGCAAGGTCGTCGGCACCAAGGGTGAAGGTGGCCATCAGCTTTTCGAGTTGCCCGGCCTGGTGGCGCATCTCTTCGGACGCCGCGCTGGACTGCTCGACCACGGCGGCGTTCTGCTGGGTCATGGTATCAAGCTCGGTCACGGCGGTGTTGATCTGCAGGATACCGTCGCTCTGCTCCTTGGCGCCGGCACTGATCTCGCCAATCATGTCGCTGACGCGTTCGACC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237827-240602 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053108.1 Halomonas sp. TA22 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 237827 29 100.0 32 ............................. TCCCAAGACTGGGCGACCGGCGAGGGCGTGAT 237888 29 100.0 32 ............................. GACGATCCCGGCACATGGACGTGCCTCTACCT 237949 29 100.0 32 ............................. TTCCTGCATTTGACCAGCCGTCGCCCGGCTAA 238010 29 100.0 32 ............................. CCCGCTTATCGATGGCAGTCGAGAGCGGGCCA 238071 29 100.0 32 ............................. TTCAATGTTTCCGTCATGCCCGACAGAGTATG 238132 29 100.0 32 ............................. GGAATCGAGTCATCGAACTCCTCGTAAGCAGG 238193 29 100.0 32 ............................. TTGATCTGGCCAGTGACCTTCTGCCCTGACTC 238254 29 100.0 32 ............................. AGTTGAGCAGATCGCTTATGCGAGTGGACAAA 238315 29 100.0 32 ............................. ATCGTGCACGGCTTGGAGTGTGGCCAGGTCAT 238376 29 100.0 32 ............................. CTTGGTACTGGTCATCCACCTTCACCCCGGCC 238437 29 100.0 32 ............................. CCGATTGTGCTCACGGCGGCATGGATGGTGGT 238498 29 100.0 32 ............................. GCATGAGCGATCACAAGCGCTGCAAATGCGGC 238559 29 100.0 32 ............................. CTCGTGTCGAGCAACTGGATACAGGACGGCTG 238620 29 100.0 32 ............................. TCATACAACTCGACCTTGCCCGGTTGCGGGCT 238681 29 100.0 32 ............................. AGATGCTAGCCGATGCGGCAGAGCTCCAATCC 238742 29 100.0 32 ............................. CATCTGCTCGCGAGCTTGAGACGCGCGCAGCT 238803 29 100.0 32 ............................. CCCTAACCGCCGAGCTATTGGAGTTTGCCAAA 238864 29 100.0 32 ............................. CTGCTGGCCGTCTACAACACCGGCTTTGGCGA 238925 29 100.0 32 ............................. TAGACGCTATCCCATCAGAGGCGGCAAACGCC 238986 29 100.0 32 ............................. TCCTCGCTGCTGGGCGGCGCTGCCAGGCATGC 239047 29 100.0 32 ............................. TTGGAGTATGCACACAGAATTTCATTTGAAAT 239108 29 100.0 32 ............................. CGGAGGAAATCGTACTGGATGTAGAGGATGGG 239169 29 100.0 32 ............................. TTCTCGAAACCTTCGGAGTTAAGGTAGCGTTT 239230 29 100.0 32 ............................. CCGACTCAGAAGCGCTTTCAGCGGCTTCAATT 239291 29 100.0 32 ............................. TTTCAAAGGTCTACGTGATTCCATGTGTGGAT 239352 29 100.0 32 ............................. CAGCGGCGTTTGTTGCTGTAACCCCATTTCTA 239413 29 100.0 32 ............................. CCACACCACCACCGAAGGAGCAGCACAGATGA 239474 29 100.0 33 ............................. GTGAAGAGCACACCTACTTTACCATCTATCATG 239536 29 100.0 32 ............................. AACAGCATTTGATTGATGCTGCACAGGTTGAC 239597 29 100.0 32 ............................. AGGACACCATGACCAAGATCATCAGCTTCGCC 239658 29 100.0 32 ............................. GCTACACGTACCGGGAAGACACCGACGAAAAC 239719 29 100.0 32 ............................. CCGTTGAGTCCTTCGCAGCCGGCGGAGCCCCC 239780 29 100.0 32 ............................. GCCATCCAGAGGACTCTCGGGATACTGGAACC 239841 29 100.0 32 ............................. CCCGCTGCGTGCGGGCACATTTCGAATACTAT 239902 29 96.6 33 ............................A ATTAGTGTCGCAAATGTCGCGCACGCTTGCTGC 239964 29 100.0 32 ............................. GAGACGCAGGCATGAATAAATCCGGACACGGT 240025 29 100.0 32 ............................. ATAGTACCAACGCAGCCGCGTACAATACGAAA 240086 29 100.0 32 ............................. ATGCGGCACGTAGCGGCATTAGTCACGCGGAG 240147 29 100.0 32 ............................. TTAATAACATGAGGAAGACCCTGACTATCACT 240208 29 100.0 32 ............................. CATACTGACTATGAGGGTCACTGGCCTCTTCG 240269 29 100.0 32 ............................. GCTGGCTTGGCAGGTGGTATTCAATCAAAGGA 240330 29 100.0 32 ............................. GCTGCTATAGCAACTCTCACCGGGAACTCAAT 240391 29 100.0 32 ............................. CCTGGGGGCCATGGCTGGTTGGTCTTAGTGAT 240452 29 100.0 32 ............................. GGAGATGACCAGTGGAGCATAGATCACACGAG 240513 29 100.0 32 ............................. CCTTGCTCCATTGCAACGTAACCTTGGTAACT 240574 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.9 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : GATGTGGAATTCCGTCGACGCCTTCACTTGGGCACAGGCCAGCAGGCAGCCGTTGAGAATCGACTCCCCTACGGCACCGTAGGGCCCTGTGGAGGAGATCAGAATACCGACTTGGTGTGACGGATGGCTCATGCGTTTCCCAAAGTTTCCAAGGTCGAGACCAAAAAAAAGCCCTCCGACACCGTATGGCGTCAAAGGGCTCTATTGCCGATATGTTCGATGGAATCCGCGCGGGTGGAGTCAAAGCATCGTTGCTTTCTCCCACGCTTTTTTTCAAGATGACAAGCTTGTTTGTGCTTGTCAACCCCATGAAATAGAGGAAATTATTTTAATCATTAATGCACCAAATTGAACGAAAAAAACCGGAGTTGCCCCAAAATGGAGTTTGATATTTCTCCCGTATCGCCGCGTTCCGCGACCGGATCGGTACCGGGCGCAAACTGGCGATACAAATCCTTGAATTCTTCGTGTTGCCGGTAGGCTGCATCACATCGCTCGAC # Right flank : GGCGAGGAGTAGAGCCAATGTCGACCCTTCCCACCTTTGCGCTAGTGTAAGCCGGAGAACTCTAATTGCGAATGCCGCTATTTTAGGGGAGGGTTACACGGGGTTCATGCAGCGTTTCCCCTATCGCTTAAATGCCACTACATTGCTTTCCGACCGATTTCGTCAGGCCCCGCGAATACCACGCCCCACCTTTCCCATATCTCGGCTTGCATTCTGTACCGCTTCCCCTTGTTGTAAGTACCGACCAATCTTGGAGGCACATGAGCCAGCATTGCGTCCACCAGCAGTGGATCAGCCATGAAGGTCTCGGTCCACAGGGTCGCAACAGAACGCCTAAGGTCATGCACGGTGAAGTATTCGAGGTGGTAGAGCGCCGCTTCAGCATCGGGCTCTTTTCTCGCCCTGCCCTGCAATCTGGCAATCGCTGTAGTGATCGTATCGTAGTGAATCGGTTTCTCGACATTACGGCTGGACGCGAAGACAAACTCGCTATTCGACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3461869-3460192 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053108.1 Halomonas sp. TA22 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3461868 29 100.0 32 ............................. TTCTACGTATTTATTAGCGAAGGTTTTATACC 3461807 29 100.0 33 ............................. ATTGGGAGTTTCCGCACTCGGCAAATGCCGTTC 3461745 29 100.0 32 ............................. CCCGGTGACTTTGGATGGCTCAAAGCCAATGA 3461684 29 100.0 32 ............................. CTTCTGGTTTGGGGCAGACCGCTATCTCCAAT 3461623 29 100.0 32 ............................. TGTGTATACACATTATGATATATGTTATTGCA 3461562 29 100.0 32 ............................. TACAAATTGACCATTATGTGAGATAGTCCCGG 3461501 29 100.0 32 ............................. CCCGATGGAAATGTATTATTCGCTTGGATCAA 3461440 29 100.0 32 ............................. CGCACTTTGAAATAAGCCCATGGCGTAACGAT 3461379 29 100.0 32 ............................. CGTACAACAATTATTACACCGTCGTACATTTG 3461318 29 100.0 32 ............................. TATCCGCTCCAATACACACTAGAATGCATTAT 3461257 29 100.0 32 ............................. GCCATTATTCATTGCGCTATACGTCAACAGGC 3461196 29 100.0 32 ............................. ATAAATGGCTAGTCTATAATTTATAGACCCAT 3461135 29 100.0 32 ............................. GCGTGTTTAAAGGCGTGTCGGCAAATGTTGGC 3461074 29 100.0 32 ............................. GCGACGTGCTCGATGCTGATTTAACTGTCGTA 3461013 29 100.0 32 ............................. TTTGCAGGTGCTCATAGCCCCCACCCTCGACG 3460952 29 100.0 32 ............................. ACATTCGACGCGAGGTGATGAACGGCATATTA 3460891 29 100.0 32 ............................. AATCCGGACTTAGCGTTAAATACCCAATACCC 3460830 29 100.0 32 ............................. CGGCCAAGTAGCTCGGGCACGCGCGAGCCGAA 3460769 29 100.0 32 ............................. TCGCGCTCGTCTAGCTCGCCGCTACGCAGCGA 3460708 29 100.0 32 ............................. CGTTGAAGCGATCGAGCAGCACGCCTACACTG 3460647 29 96.6 32 ............................C CGCCAGAAACGAGATGAGCACGTCCTCGCCAC 3460586 29 100.0 32 ............................. TCAAGCGCGCTCTTGACGGCGCTGTCCAGCAG 3460525 29 100.0 32 ............................. TGACGCTTGGCTGGGGTGGTGAGGAATACACC 3460464 29 100.0 32 ............................. GGTATGTCCGATGAGTCGTCCATCATGCCCTG 3460403 29 100.0 32 ............................. CGTTTCATTTTCGTCCTTTGAACGCCGATGCA 3460342 29 100.0 32 ............................. TCTGGACGCTCGGATAGGCGAAGCTTTGTCAT 3460281 29 100.0 32 ............................. GCGGTGGCGCCGACCATCGGGCAGGTGCCGGT 3460220 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.9 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : GTGAGATCGAACCGCCGCTGCCACCCGCGGACGCTGTGCCACCCGCCATCCCTGAACCGACATCGCTGGGCGATAGCGGCCACAGGAGTCAATAGGATGGCCATGATCGTTGTCGTCACCGAAGCCGTACCGCCCCGCCTGCGTGGACGGCTGGCCGTCTGGCTGCTGGAGATTCGTGCAGGTGTGTATGTCGGCGATGTCAGCAAGCGCATTAGAGAAATGATCTGGGAGCAGGTCCATGCCCTGGCAGAGGATGGCAACGTCGCCATGGCCTGGGCTAGCAACCATGAATCCGGCTTCGAGTTCCAGACCTATGGCGCTAACCGGCGTGAGCCTTGGGATCACGATGGGTTGCGTCTGGTGCGCTTTCTGCCCATCGAGGCTAAGTGATTGGTAATACAGGATCTTTAAAAATTCAGGCTGTACAAAAAACAGGCAAAATCGTCGGTGGAATTTCTGCTGGCGATTTTCCTTTTGTAGATCAACTATCTACAATTAGA # Right flank : CATGCCCGCTGCGCAGCCCTCGGTATCCACGACCCGACATCAAGGATCCATCGCAGAACATCACCTGGGTGGCGCCAGAGGGTGGCGGCGGGCCCAACTACCCCAACATGTGACACCGGTATCCAGCAGCTAACGGAACAGCGAAGAGAAACGGGCATGCCATGGCATGCCCGTTGCTTTCCCGCCTCCGTCACACTTACGTCAAGCTCATGTCATGGCACACGCCAAGGCTTCCACGACCTGTCGCTGCTGCGCCTCCTCGAGATAGGGGTGCATCGGCAGGCTGAGAATCCGTTCGCAGACCGCTCGGGTCTGGGGCAGGTCGACACGGCTGGCCACCGCCGGCTGTTGGCTTAGCGGTAAGGGGTAGTGCACTGCGGTGGGGATTGCGTCACGCGCCAGCGCCTCACGCACCACCTCGCGGTTCTCGACACGGATGCTGTACTGGGCATAGGCGCTCAGGTTGTGCGCCTCGACGTGAGGCGTGGTGGTAATCCCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //