Array 1 36-245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYCR010000129.1 Klebsiella pneumoniae strain MRSN526410 MRSN526410_contig00129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 97 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 158 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 220 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================= ================== 4 29 97.4 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGGAGCAGGCACCCGCCGCAACGACGAAGAGCGCG # Right flank : | # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [15.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36-247 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYCR010000125.1 Klebsiella pneumoniae strain MRSN526410 MRSN526410_contig00125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 97 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 158 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 219 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGTTGCCTGGTCTGCTTGGTGATGATCCGTGGTAG # Right flank : AATGCAGCAACCGGCAAATATATCGCCGGTAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95945-93906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYCR010000023.1 Klebsiella pneumoniae strain MRSN526410 MRSN526410_contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95944 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 95883 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 95822 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 95761 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 95700 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 95639 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 95578 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 95517 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 95456 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 95395 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 95334 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 95273 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 95212 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 95151 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 95090 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 95029 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 94968 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 94907 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 94846 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 94785 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 94724 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 94663 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 94602 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 94541 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 94480 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 94419 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 94358 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 94297 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 94236 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 94175 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 94114 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 94053 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 93992 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 93934 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //