Array 1 572079-572596 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSQX01000002.1 Pseudomonas aeruginosa strain 014-2A IPC1020_2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 572079 29 100.0 33 ............................. TTCAAGGGCTGTCGCACTGTCTGGTGGGATGGC 572141 29 100.0 32 ............................. ACCGTAACCCTCATTGAATACCTGGCTGAGCA 572202 29 100.0 32 ............................. ACCTTCATGCTGACGTGGAACGACCTGTTGGA 572263 29 100.0 32 ............................. GTTCCCTGATGGTTCCCTTGTAGGTTCTATTA 572324 29 100.0 32 ............................. GGATCTTCCATGCCATCGCGCTGTGGCTCGCC 572385 29 100.0 32 ............................. CCTTCGGGCAGATCATCGGCCAAATCCCAGCC 572446 29 100.0 32 ............................. TAGCGCAGCCCGTCGAGGAGCTTGCGTTGCAG 572507 29 89.7 32 ............A............G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 572568 28 79.3 0 A..........A..C..-.....A....T | C [572572] ========== ====== ====== ====== ============================= ================================= ================== 9 29 96.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : CGCTCGGCGCGGCTGGACATGCAGAAAGCCCTGGACCTGGCGGTGAAGAGCCGCGAGCGGGTGCGCTGAGGCGTTCCGCCGGCCCACGGCCTCACGGCGAGGCTTCCCGCGCAGTTCGCCGGACAGGGTGGCGCCGAACGCCAGTTAGCGATGCCGACCGGCAGCGGCGTGGCCATTGTCGTCTTCAGGCTCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCTCCGTTGGCCAGGAAGCGCGGCGAGTGCATGGACGTTCGGGGCCGGTTCGATGGTGAAAGGCGGGGCCATGTCTGCGGAATCTTGCTCGGTTCCGGGTGAGATGGGGGCAGGGAATATAGGAGGGCGGCGGGTTTCGACTGGTTCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCGGGAGCGGCGCGAGGGCAGCTTGGCCCGGTGGAATTTCGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGA # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAACAACTGACGGTGCAGGCGTTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTTGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAACAGATTGTTAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGTCACGGGCGGGATTGGTCCCGGTCCATATCCCTCCTGCGGTCCTTCGCTTGCTAAACGGGGGTGAGCAGGCATATCCCTCGCTGGCTGCTCCTTGACCAGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 582147-583152 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSQX01000002.1 Pseudomonas aeruginosa strain 014-2A IPC1020_2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 582147 29 100.0 32 ............................. GGGCTGTCGGTGCTGGCGCGGAAGATCGAGGA 582208 29 100.0 32 ............................. CCAGCAGCAGCGGACGCATCCCAAGCGACTCA 582269 29 100.0 32 ............................. ACGACTATGACACGGGCGCCCCGTGGGAAAGG 582330 29 100.0 32 ............................. ACCTCGCTAGAGGCGATCCTGGCTCGCTTGAA 582391 29 100.0 32 ............................. CGAAGCCCCCTTAGCCCGATAGCAGCGTCACC 582452 29 100.0 32 ............................. CACTCCCCGAACACCATGTGATCAAGCCCAGC 582513 29 100.0 32 ............................. GAATCGACCGCGTCCGGCGGAATCTTCGTGTG 582574 29 100.0 32 ............................. CCGTGCTTGCGCCAGAGGCTGGCGTGGTCGAG 582635 29 100.0 32 ............................. TAGGCGGTTTGCAAGCGCCGGTAATCGACCAT 582696 29 100.0 32 ............................. GCATAGGCAAAACCCCGTAACCCGCGCCTTCC 582757 29 100.0 32 ............................. ACGATCAAGGTCTTCAACCGCGAGGGCCAACC 582818 29 100.0 32 ............................. GCGCTGCCGGCTGGTGAGTACAGGCCCGTCGA 582879 29 100.0 33 ............................. CAATCATCGAGTCCAGATTCACATTGGCGCCCA 582941 29 100.0 32 ............................. TGGTGGGAGGTGCCGCCGGAGTCGGTCTACGC 583002 29 100.0 32 ............................. GCCGAACAGGTGGAACGCATCCTGCAGGCGCA 583063 29 100.0 32 ............................. GGCGATGCCGATCTCCTGAAGCGAATGTACGT 583124 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGGTGCGATATATGCACCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGACCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //