Array 1 17980-17432 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJQS01000012.1 Fundicoccus ignavus strain WS4759 12_39105_76.0461, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 17979 36 100.0 36 .................................... AACATCACTGCAAACGGGTCAGATAACATGAAAGCA 17907 36 100.0 36 .................................... TTTACGAACGTCTTAGCCTTTTTATTGAACCATTCC 17835 36 100.0 36 .................................... GCTCTAATCAAATATTTAAGCAATTTCATGTATAGT 17763 36 100.0 37 .................................... AGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCCT 17690 36 97.2 37 ..........................A......... TTGGTCAGAATATCCAACTGATGTGGACACAAATTAA 17617 36 97.2 41 ........................A........... TTGCCGTCGATTATTAATTCAAGTGGCAATATTTCAAACGA 17540 36 94.4 37 ..............C.............G....... ACGTCATGACTGTCTAACCTATCCTCGTGCTTGCCGA 17467 35 88.9 0 ..............C..TT..........-...... | A [17442] ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 97.2 37 GTTGAGATACCATCTTCCCCGAGAGGGGTCGGAAAC # Left flank : GAAAGGACAAACTATCCCTGCTTATATAGGAAGTGTACATTTGAAATGGATAGGCAATGAAAATAGCTTAGTTGTTTACAATTTACTATGGTTTTTTGCGGAATTATCAGGAGTTGGGATCAAAACTGCAATGGGTTTTGGTAATGTTAAGGTTCGTTAAATGGTGTGATGATATAAAGCTTGGAGTGAAATTATAAGTAAGTCAAGTACATTGATAAAATTTGAAAGAAAAGTTTCATGAACTTTCATTTTAATGCAGTTCATTGTAATTTCGAAACTTATCAGTGAAAAGACGGGACCAATCAGTCGGTCACTTTTTATTCATGTTGAATATTATAATCTGAATAGTCATGAAGCAAATTCACATAAATTCCACAAAACGTTTGATCACATAACGAATAATATAACAAAGAAATATGGTATAATTCTTAGTAAAAGATGGTACCTTATAAGTCAACACAAGATGTAGGGGTTTTTATTACTGTGTCACAAACTGTGGG # Right flank : TCTGGAGACGGTTGTATGCAGGGATTTAAAACCACTTTCCTAAAGAGGCATGAAGTAGTGTGGATATTCAGGTCGATAAGAGATGGTTTCCCTTGATGAACTTTATACTTACTTTTTTGTTTCATACTTAAACATATGTACCGATAAGCATACACAAATAAGGGACTATCATCTGTCATAGACGATAGTCCCTTATTATTTTAGACAAACAAATTCACATTCTTAACAATAGCTTTTAATTAGATTACTCAAATTATTCAAATCACTCTCTAACAGCATATATCTTAATCAAATTCCTAGTATAAGCTCGTCTTCTTACATTTTATTGCAATCGTACAGATTAATTCCGACATAGTGACGTGGGGATAATTATTACATCCAGATAAAGCCACTTCAGCGGAAAACAGAGCCACTTAGTGCAGAAAGTGAGTCAGGTAGAACACTTTATTTATTATGACCTATTGTAAAATTAATGAACATATCAAATGGTATGAATAATT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGATACCATCTTCCCCGAGAGGGGTCGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 34825-34078 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJQS01000012.1 Fundicoccus ignavus strain WS4759 12_39105_76.0461, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 34824 36 100.0 35 .................................... TATTATTCTATATATTGTAAGTCTGATAATTCGTA 34753 36 100.0 38 .................................... CTTCTTGCCTAGTTTAGGTAGGAAAAGATTCAGGAATT 34679 36 100.0 33 .................................... ACCAAGAAAGGCTTTGTAATCATCGACAGTAAT 34610 36 100.0 36 .................................... GATTATATTGCATCTATTTCATCAAGGATATATTCT 34538 36 100.0 33 .................................... CAATAGCGAACTGCTTTTGCTGTTCTCCTATTT 34469 36 100.0 35 .................................... GATAAGGTCTAAAACCTTTTCTTGCGCACTGGAAC 34398 36 97.2 35 ......................A............. CCATTCAAAGAAGCCTCATAAGCCTCATCAGAATT 34327 36 100.0 34 .................................... TCAAATACATTATTCTTAACAAAAGAAGAAGTTC 34257 36 100.0 36 .................................... GTTGCTGGTGTTAGTCGGATGTCTGCATTTAGTGAT 34185 36 100.0 36 .................................... TACCTCTTTATTTTTAGTTATATTAAAACTTTTTTG 34113 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 99.5 35 GTTGAGATACCATCCTCCCCGAGAGGGGTCGGAAAC # Left flank : AAATATTATGCAAAGTTAATTACTAAAAATCTTTTGTTACATCTAGCATTTAGATCTTAACTTTACATAATATTTAGCTTTCCATAAGATGAAATCGGCTGTCTGCCCATTGAAGGTCATAATGCCAGTTTATTGTTCCAACTGTTAAATCGACGGTATGAACAGCATTCAATCATTGTGACTTCTAATTTAGCATTGTCCGGTTGGGCAGACCTATTTAAGCGTCCAGAAACAGCTACCGCCATTTTAGATCGCTTAATCCATCATTCTAAGGTATTTAAGATGACAGGTAAATCGTATCGTTTGAAACAAGCCTCAGAGAATTGACACTTTCCAACAGTTTTCATTGGCCTAAAGCTACAAAACTAAATTGCCCTTCACAACATTGATAAGGAATGAAAATTTTCTCTTTATGTGTTATGATTATAGAGAAAAGATGGTAGCAATTCAACAAAACACAAGATATAGGGGTTTCTTAACGATACGGCACAAACTGTAGG # Right flank : CAAATTGTTGCAACTGCGCGGATTGTGAAACAATGTCTTTGAAATACCTTCCTTCCGATAAAGAGTATAGCGAGACCCTTTCAATTGAATTTCACTTGGAAATACTACTTAAATGCTAATAACCGCAATTTACCTTAATTAGGTAAATTGCGGTTTTGTGTTTGTACAGTAGGTTAGAAATTAGATAAATAAATAAACATTAAGATAATCATAATAATTGTATCCGTTTTCATTATATAAATGCTATAATGAGTATTAATAAGGATCGAGGCCACTCGATGCAGTATTCGTACTGGGAGGATTCCAATCTCAATTATCTTAAATATCAGTAATAGCATAGCCAAATAAAGGAAAATAAAAGAAGGAGCTTTAAAATGAAAATTAATCAGGACAATTTCTTTTCTATGCTAGAATCAAAGATAAATTCAGACCTCTATCTCTACACTGATGCCATTGATTTTCATAGCGATACTATGGTTAGCGAAATATCACAATATAAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGATACCATCCTCCCCGAGAGGGGTCGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //