Array 1 113216-115138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNOB01000034.1 Helicobacter pullorum strain 229313/12 Contig_34, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================== ================== 113216 36 100.0 30 .................................... ACCATTGGACGGACAATTCATATAAATTCT 113282 36 100.0 30 .................................... ACTTCGGAAGCTCTATGAAAAAGTTTCCGA 113348 36 100.0 31 .................................... GTAAAACTGCCTGTTTTATCTACTACATTAG 113415 36 100.0 30 .................................... TTCACATTTATCTAGTTTTGTTAAGCGGTT 113481 36 100.0 30 .................................... CCAAAAGCTCTACTTTAAAACCTCTTCTTT 113547 36 100.0 30 .................................... ACCATTGGAAGGACAATTCATATAAATTCT 113613 36 100.0 30 .................................... TCATTTGTCCTTTCGCTTCCTTTTTATACT 113679 36 100.0 30 .................................... TCTTATGCATGAAGTTTATTTATATACGCA 113745 36 100.0 30 .................................... GATATTACTCTGACCCGTAACCGCTATGGT 113811 36 100.0 30 .................................... CTTGTCTTATATCCGCTCGCTGACACAAAA 113877 36 100.0 30 .................................... ACATTTGGACGCACAATTCATATCAATTCT 113943 36 100.0 31 .................................... GCGATTTCTGATAAACGCAATCAAGCTTATG 114010 36 100.0 30 .................................... TTGATTCCTTTTTTGTTACAACCAACACTT 114076 36 100.0 30 .................................... ATATCAGGAATATAGATATCATAAACCACT 114142 36 100.0 62 .................................... TCTGGCGAACGCTATATGCATTNNNNNNNNNNTTTAGAGAAAAATTAAATTATTGGAATATG 114240 36 100.0 30 .................................... TCTGGCGAACGCTATATGCATTTTGTTAAT 114306 36 100.0 30 .................................... ATTAAGCCTGTATTTGTTTGACTGCAATTA 114372 36 100.0 30 .................................... CTATCAAGAATATCGTTATCATAAACCTTT 114438 36 100.0 30 .................................... AAAAGAAGGTTACACCAACGCCGAACGTTA 114504 36 100.0 30 .................................... TAATGAGGAGAAAACTTATGAGGATTGATT 114570 36 100.0 30 .................................... GCTGGTATTAAACATTCTGCAATGCCTTTT 114636 36 100.0 30 .................................... GAATTTGTTCTCAAACTCCCTTTTTACACT 114702 36 100.0 30 .................................... ACCCCCTCTGACGCTTCTTATTCTAGTTCT 114768 36 100.0 30 .................................... GATTTGCTTTGCGCAGTGTAGATGTATTAA 114834 36 100.0 30 .................................... ACCTTAGTGTTTTGCAAACTAGAGATTAAA 114900 36 100.0 30 .................................... CAACGCTTTACCATTAGACTTAATTATTGA 114966 36 100.0 30 .................................... AATTCTAAATAAGGATTAAGAGATTCCAAA 115032 36 100.0 30 .................................... ACATTGCTTTCGCTCAAAATCGCATACCCT 115098 36 91.7 0 .........................CC....C.... | AT,AG,T [115121,115129,115132] ========== ====== ====== ====== ==================================== ============================================================== ================== 29 36 99.7 31 ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Left flank : GGGGGAGTATCCGCTGTCTTATTATCACAGAGAAGCAGTTTGATTCTATGGAGATTTTGCTAGGTGGGGTGGGATTCAATGAGATGATGAATGAGCCAAGAAATCTCGTGCTTTTTGGGTTTGATGAGAAAAAGGGAGAGTATGTGTATGTGGATAATGATAAAGATAGCGATGAAGAGAAGTTGTTGCAAACAAAATCAAAGAAAACAAGAAATATACAAGGAAGTTTATTTGAGTTTTGAAGATAGAATGGTGTGCTACTTAGGATAATATGTGTAGAATAGTAACAATATAGGGAATATAAAAAACAATAAAATGTGAAAAGTATTATGTAATATAAAGTAAAAAAGTCTTGGCAAAAAGGGATTTTTGGAGGTTTTTAATCTCACACCCTGCACCTTTACTCCTAGTATTGCCAAGAAATACTAGGTAGGTTTATTTTAGTCCCTTTTTAAATCTTCTTTTGCTATTGTAGCATAAAATCTCAATTTTTTGGTCTG # Right flank : CCATTATTTTATTATTTTTGATATAATTTAGGTTTTTTAAAATATTTTAAATGATGTAGTTTTTGATTGCTATAAGATAGGTTTGCTATATTTATATTTTGGATTTGTGCGATAAGCTAATGTGTGGTGAAAAATTAATAGAGTTTTAGATTGTCTTATCTTTTGGGGTTTTTCGTAATTTAGACTAAAAAAGCGAGTATAACACACTACAAGATTCAAACATATTTTTTAAGATTTGAAGGAAAAATCATGGTATATACTACTTTTTACCAAAGTCCTATTGGCACGATACTTTTAGCAAGCAAAGATAATAAGCTTATAGGTTCTTGGATAGAAGGGCAGAAATATTATTTAGGAAATCTTAAGGAATCTACACAAGAAAAAGGTGACGAACCTATCTTATTGCAAACTAAAATATGGTTAGACAGGTATTTTAATGGAGAACAGCCTCATACTTTTGAATTAGACTTGGCACCTAATGGAAGTGTATTTGCTACAAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //