Array 1 1698-1163 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRO01000004.1 Halorhodospira halophila strain IM 9630 scaffold0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1697 36 100.0 36 .................................... TAGGTCTCCGGGTCGTAGGGTAGGCGAACAAACTCT 1625 36 100.0 35 .................................... ACCTGACGGATGACCAACATGCTCACCGTGTTTTG 1554 36 100.0 38 .................................... GAAGTGGCCATCGACACCGACCTCCATGCTCCCACCAA 1480 36 100.0 34 .................................... AAAGTGGGATCGCTCGGCCGCCCGAGGTCCACGA 1410 36 100.0 35 .................................... GGCTTCGGTAAGGCTGGGTTGACTGACAAGCATGG 1339 36 100.0 35 .................................... GGCGGTACTTTGGGTTCCCTTGCCGTTCATGCCGG 1268 36 100.0 34 .................................... ACCGAGCAGCGTTCGAGCACTGAGCCACTGGTAC 1198 36 88.9 0 ...............................GT.GA | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 98.6 35 GTCCGAACCTAGCCCTGTTGGAAAAGGGATTAAGAC # Left flank : TGCGCCCACCACGGCGCCCAAACTATTCCCGAGGCGTAGCATGTGCACGGAGTTTGAGCTGCTGATCCGCAAGCAGGCCCGCGCCCAGGGGCGCTCCCTGTCCGAGGTCGCTCGCCGGGCTGGAGTTAGTCGCCAGTGGCTCTATGACCTCTGCCGCTGCCGAGCGAATCCTACGGTCTATACGATCGCGGAATTAGCCAAGGCGCTGAGGTTGCCCCCAATCCGCTTAATCGAGGCGTATTTCGCCTGCTTTGAGGAAGGCGAACACCATCGCTGACTTTGCCCAGACCCCGATGCTGGAAGCCGGGCACAGCAAGCTTGCCGCCCCTGGCGTATGCTTTAGCTGCTGTTATATGATCAGATGTTGCGCCAATGGAGCGGGCTCTTTGTCAAATAGGAATAAGGTGCGGATGAGAGGTGCTCATAACTCCGCGGGTCCCGCGATTTGCGGTAACCCCCTTCGTAACCCCATGATCAGAAAGGCTTTATGGGGCCGAGGA # Right flank : GTTGATCCGCTTCCGTGGAGACCTTGATGCTTTGGTAAAAGGAGGTTTCCACGATGCCCAGAACCCGACCGCCTTACACGCAGGCGTTTCGCCAGCAGATGATTGATCTTGTCCGCTCAGGGCGCACGCCTTCGGAACTAGCTCAGGAGTTTGAGCCGACCGCTCAGACCATCACCAACGGGGTCGCCCAGGCAGACCGCGACGCTGGCAAGCGCACGGACGGTCCGACCAGCGAGCAAAACGAGGAGCTCAAGCGGCTGCGAGCCGAGAATAAGCGGCTGCGCGAAGAGCGGGAGATTCTGTCAAAAGCCGCGGCCTGGTTCGCTCGGGAGACCGACGCGAAGTCCAGCGGATCTTCGAGTTCGTCGAAGTGAATCGGGCCTATTACAGCACTGCCACGCTTTGCGGGGTACTGGGCGTCTCCCCCAGCGGTTTCTACGCGTGGCGCAATCGCGGCCGCTCAGTCCGTGCGGCGACAGACGCCGCTCTGACGGAGCGGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAACCTAGCCCTGTTGGAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 20210-19961 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRO01000004.1 Halorhodospira halophila strain IM 9630 scaffold0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 20209 36 100.0 35 .................................... CTCCCAACGGGGCCACTCTTTCCGGAGTGTCCCTT 20138 36 100.0 34 .................................... GGGACTCCTCCTCCTTGATCTCCTTGCCAAGCTC 20068 36 100.0 37 .................................... TCGCCGAGGACCTCGATGATGGCCTTAGCCTCTTCTT 19995 35 86.1 0 ........................G...-...G.TT | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 96.5 36 GTCCGAACCTAGCCCTGTTGGAAAAGGGATTAAGAC # Left flank : TCGGTACGCCAGCGATTGCGGAGAACGGCGATGTCCACGGCGCTTGAGTTGCTCATCCGCAAGCAGGCCCGCGCCCGTGGGCTCTCGCTCTCCGAAGTGGCCCGCCGGGCAGGGATCAGTCGCCAGAGTCTCTACGACCTTTGTCGCTGTCGGGCCAACCCAACGATCTACACGATCGCGGATCTGGCTAAAGCGCTTGAGTTGCGGCCGCTCCTCCTGATCAGGGTGTATTTCGCCTGCGTCGAGCGAGGCGAGCGCGATGACTGAGCTTCGTGCCCGCGGCCTTGCGCCGTGGGCGAGCAGTTGAGCCGCCATGGGCGTACACCCCTGGCTGACGGCTGCCCATTTGCTTTAGAATCTCAGTGAGGTAGGCAGATCACGATCATTTTACAAATGAGAATAATGTGCGGATGAGAGGCAATCATAACTCGCAGGATTCCGCGATTCTCGCTAACACCCTTTGTAACGCGCTGATAATAAAGGGCGTACAGAGTCGAGGA # Right flank : CCTAAATTCTCCCGCGGAGTCCTTGGAGGGAGGCTTTTCGATCTGAGTTCCGAAGCCATCCTCTGGTGCATGGGCAAGAACGGAAGGGTGGGGATCCAGTAGCGGTGCCAAGGGATTTAGCTGGATGCGGTCGGAAGGCGGTCTCGGAGTTGCTGCTACGAGCGCCTTCGACGGGGTAAAAAAAAGCCCCGAAAGCACTGGGGTCCCGGGTCCTTTGTGCTGGTCCATGGAGAAATCTTTTTGGTAAATCGGGTGGGGTGCTAGGACAGCGGGACGGGAAAGTGAAAAATCATGCGGACGGGTCATCCAGGGAGGGCCTTCCATGGCCCTGAAAAAATTATTCCTTGCTCTTAGTCATCGAAGGGGCTGGAGGATCCGCCAACGCCCCAGTCGTCGTCCAGGCCGGAAAACCCGCCAGACAGCCGGCTATGATCGATATCATCATTGAATGGAGATGGGGTGCCATCGTCAGCTAGTCCCGTATGCCCATGCTCGGGCCC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAACCTAGCCCTGTTGGAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //