Array 1 8081-5431 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFLY01000341.1 Klebsiella pneumoniae strain DZ2-DB DZ2-DB_L2_I334.R1.clean__paired__contig_341, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8080 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 8019 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 7958 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 7897 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 7835 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 7774 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 7713 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 7652 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 7591 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 7530 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 7469 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 7408 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 7347 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 7286 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 7225 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 7164 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 7103 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 7042 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 6981 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 6920 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 6859 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 6798 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 6737 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 6676 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 6615 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 6554 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 6493 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 6432 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 6371 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 6310 29 100.0 32 ............................. CCGCTTTAACCCGCTCAGGCAGATCCGGGTGA 6249 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 6188 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 6127 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 6066 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 6005 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 5944 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 5883 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 5822 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 5761 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 5700 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 5639 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 5578 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 5517 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 5459 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 118515-119635 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFLY01000027.1 Klebsiella pneumoniae strain DZ2-DB DZ2-DB_L2_I334.R1.clean__paired__contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118515 29 93.1 32 ............TG............... TAACTTTACCCCGGATCCTGATGAACCTGTAC 118576 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 118637 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 118698 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 118759 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 118820 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [118874] 118874 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 118935 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 118996 29 100.0 32 ............................. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 119057 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 119118 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 119179 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [119184] 119241 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [119252] 119303 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [119308] 119365 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 119426 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 119486 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 119547 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 119608 28 86.2 0 ..........A.....T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //