Array 1 487521-486178 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007551.1 Haloferax mediterranei ATCC 33500 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 487520 30 100.0 34 .............................. GAACAGGATGGCGAACGCGGTGTCTGCGCCAGTT 487456 30 100.0 35 .............................. CACGACAATCAAGTCTGGTTGCATGGCGACACGGA 487391 30 100.0 37 .............................. CTGTGGCCTCCAGCGGCCGTCAGACAGTCGCATCCGA 487324 30 100.0 36 .............................. AAGAAGCCGCTCGCCGTCCTCGATGACGGGCGGGCG 487258 30 100.0 36 .............................. GACAAGACTCGCGACGAAGCCGAGTCGAAACGCCGC 487192 30 100.0 36 .............................. CTCTTTATCCCTCCTGCCCGAATGTCTACGAATATC 487126 30 100.0 36 .............................. GAACCCACTGGTGAAGAAAAAGTTGTAGAGACCCTA 487060 30 100.0 37 .............................. ACGACAATCAAGTCTGGTTACATGGCGACACGGATGG 486993 30 100.0 36 .............................. TTCCACAACGTCGGGGAGGGCGAAATTAGCCAAGCA 486927 30 100.0 35 .............................. TCCCGCTGGGGATGTCGGGAGTGCCGGGCGAGCCA 486862 30 100.0 34 .............................. CCCGGCCCGTTGCCCCCCACGGCAATCGTCTGCT 486798 30 100.0 34 .............................. CGTCTGTGTTATTCTGTGCGTCTGCCGCGACAAC 486734 30 100.0 35 .............................. ATTGCCTGTCCCCGTCGTGTAATCAACTCGGAATC 486669 30 100.0 35 .............................. GAGATGTGCGACCGCGGCGAAATGAGCAGTTCGTG 486604 30 100.0 37 .............................. GCGACATGGGGACCGTCGAGAACGCGCTCTATGGGGA 486537 30 100.0 37 .............................. CGAGGGTCCCGGTGTCGAGAGGACCGGGACGGACGGA 486470 30 100.0 38 .............................. TCGGTAATCTGGGAGGCGTCAGTCTCGGCCGAGTAATC 486402 30 100.0 36 .............................. CTCGCCATCGCCGCGAACTCGGTCCTCCTCGGGGTG 486336 30 100.0 35 .............................. AAGCCTTGAGAGTGTCTGTTGGTATGATGAATGTT 486271 30 100.0 34 .............................. AAGTAGACCGCGCTCAGTTACGACAGCTGCTCGA 486207 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : ACCCAAGCCATAGCAGATTAAAATAATTCGAGTACTGTCCGTTCCAGATGTTGATGGTAAGTGAATATTCCCAACCACTCCTCTGCCAATGGCTTCTTTTTCCTGGACGCCTTCACTAGTCACATTCGTCCTTCCTGCTTGACCACCACCGAGAGCTACCAACACGACCCCGATAATTGCGGTCAGGACGAGATATAACCCAGAGTGTGTCGTTAGATAGATAGCACCGACAGTAATGATTCCCGCGAGAATCGTATAGATGAGGACTGTTACTGCGACTACTCGCTTGTCCATGTCATAAGTAGAACGACAGTTAGTTTAATTTTTATCATTTTGAGGAATTGGTGTATCGCGCGTCCCGGTGTTCTCGGAAGTCCGTTACGTGGGTCTTGACCTGAATTTCCGTCGACCCCCCGGGGGGTTGGGGGGTATTGGGGGTCGACGGAAACTGTTGAGTGGGAGTAGTGTGTAGGAGGCTGTATACCCTCGAATCGGGCATG # Right flank : ACGATGATCTCGCCAGTCTGCAGCGTTACATTGGGTTACAAACGAATCTTTTCTCGTGAGGACTTCCGAAACTAACCTCTTCCCGGAACTAGTCGAAGGTCAAACAGTAACTACAGGGCGTGAGTGTATCAACTCGCCGCTATTCAACGACCTCGAATGGCGCGGCGAGTGCGATGCCTGCATCATGTTCGGAGAACCCCCAGTAAATGAATCGGTACGTGGCTGGTGTGTGTGCCGTACACCGTTGGAACGGACCTGAAAATTCGTTAGCGCTAAGTGTCATTTCCCATCGGAATTCTTCACCAGGCTCCAGCACTCGCTGAGACGGTGACCACTCATATTCTTCGGGCACACCGATGGTATTCCGCCACGTGTCGTCAGAGCTTAACCGCTGAATCATATAGCGCGGTTTCCCAAGTGTGGTGAGTGGGTCAGTGGACTCGTTTGTGAGTGTCGCCACGAATTGCTCACCTGGCGAAATAGATTGTGGCACCGTCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 517649-516566 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007551.1 Haloferax mediterranei ATCC 33500 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 517648 30 100.0 36 .............................. TCCCGAGGAGTCGTCCGCGTCGACGCGGATGAGTTG 517582 30 100.0 35 .............................. GTGCATCGCCGAGCGGTCGTTCGGGTCCATCTTGT 517517 30 100.0 34 .............................. TGATGATGGGTCCATCACCACCCACCCCCTGCGT 517453 30 100.0 35 .............................. AAGAACCATTGACTGGAACGCAACGACGCATCCTC 517388 30 100.0 37 .............................. TGGGGATGTCTCGGACAATCTCTGACCGTGTGATAAA 517321 30 100.0 37 .............................. TGACTGGAGAGCGTGCAACGGCCTATAAGATAGACCT 517254 30 100.0 35 .............................. TCAACTGTCCCCTTGTCCGCTTCGTCGCCTGAGCG 517189 30 100.0 36 .............................. GTACTTCTCTCCATCTTCGAGATTAGTGACGTTCAG 517123 30 100.0 36 .............................. GTACTAAAGTGTGGCACGGAAAACACGAACAGCCCT 517057 30 100.0 34 .............................. CCATCGTGGGTTGATTCGATACTCGACCGCAACG 516993 30 100.0 35 .............................. TCGACTTGCGAGATAATGTCGTCTTGCTCGGTGGT 516928 30 100.0 35 .............................. AAATATGATACCACCGAACCCGTTTGTAGCGCCCA 516863 30 100.0 37 .............................. GTTGGTGCCCGCGCGGTTGGCGTAGGCAAGGTTCGTG 516796 30 100.0 36 .............................. TGAGGTCTTCCCTAACTTCTGCATTGGTGTGTCCCG 516730 30 100.0 37 .............................. AAACTCCTCGGCGTCGACACCGAGCGCACGATCGACG 516663 30 100.0 38 .............................. CGTTTCCTCATCGAGGACTATTAAATCTCCTGACGAAT 516595 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : GGGTTATTGTCAAGCGTGTTGATAACGAACTTGTTGACCGTGTCGATATCGGCGTCACCGACGGCTTCCAACCCGTTCCGCAGGTCACCACTGTAAGCGCGAATCTTGGTTGCTATGAGGAACGCTGTTTCTAAGCACAGTTCTGGTTCGGTCGCTGCACAGTCCTCCATTATAATTGAGACGTGCGAGAGGGACTGGTAGGAGAGTGAATCAACGATACTCTGCACTTCAGTCAGTTTTTCTGAACACGACAGAGAGTCATCCACTTCGAGGTCTACGACGTGCCAGACGGGAAGTTCATTGTCCTCGGCCATGACTGGTAGTATAGTTGCCTATCTGATAGCTCTACTCCGAGAAAACCCGAATCTCGGAAGTCCGTTACGTGGGTCCTGACCTGAATTTCCGTCGACCCCCGGGGGGGTTGAGGGTTATTGGGGGTCGACGGAAACTGTTGAGTGTGAGCAGTGTGTAGGAGACTGTATGCCCTCAGATTGGGCATG # Right flank : TTGCATCTCTTCCAGACTCTCCTCTATGCTCCGGTTACAGACGAACCCTTTCTCGTGAGGACTTCCGAAAATAGTCGATTCTCGGAGGTACCCTGACGGGCGACATCAGTGAATCCTTCGTGGACCGATGGACATCATCACCCAAGTAACGAGGATAATCACAAGGATGGGAAGCACGTCAACACCGGCCATCCACCACGGATTGACTGTTCGCGTCACGGTGACCGTCTCCTGATGAAACCAAACGTGTCTCGGTGGCGATGTTGAGAACCAAGAGACGCCGAGTGTGATCGAAACGACGACTGTGAGCACTGCGACTGGCTTCGATACGTGCTTGATAGCACCGAGCAACTTGCCACTCATAGTCGCTTCCTCCTACCTCGTGGTTCGTCGAGGCCGTCGCCATTCTCCCGAACGTGCATCCAGCCGAGCGCAGTTCGGAGGTAGTCAATATGGATGGCCATCTCACGATGAGTGCGTCCGGGGGACTCATCGGTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2595304-2593665 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007551.1 Haloferax mediterranei ATCC 33500 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 2595303 30 100.0 54 .............................. CACGTCAGGTCGTGTGCCTTGCGCGTTGCGTTGACTTCCGAGCGCACGCTCTTG 2595219 30 100.0 34 .............................. GGACCCAAAACCCCAATCGAAGACGCGACAGTCG 2595155 30 100.0 36 .............................. GTGTACGAGGTCGCCCACGACCGTGCCGTCGATGGT 2595089 30 100.0 36 .............................. CACGGATGGACGGCTAAGACGTAGTCGCCTTCGACA 2595023 30 100.0 36 .............................. GCGGACGGTGGTTCGGAATGACTGACTCTGCTAAAT 2594957 30 100.0 35 .............................. GGAGGTACAAAACGAGTCACAAAATCTAACGTCGG 2594892 30 100.0 37 .............................. GGGGAGTGGGAGGTGTCGCAGACCCGACGGCCCGCCG 2594825 30 100.0 36 .............................. TTCGACGCGAAGGTCGTACACCTGCCCGATTTGGAC 2594759 30 100.0 35 .............................. GAAGATTATTGAGGGAGTAACGTATGAACCATCTA 2594694 30 100.0 38 .............................. CTTTGTCGGCGAGGACGAGCGCGCCGGCTTCGAGCGTC 2594626 30 100.0 38 .............................. GACCAGACCCATGTACTCCGCAGACCCGGCCTTCGCGT 2594558 30 100.0 35 .............................. CGCGAATGCAACAATCGGCGTTGCATGCATGACGT 2594493 30 100.0 37 .............................. TTGACGAGGGGACAATCCATGAAATCCATGTGAAATT 2594426 30 100.0 36 .............................. ACGGTCTCGAAATGTTGCCCGACCGGAACGCATATC 2594360 30 100.0 37 .............................. CGGTCCTCCGGCAGATTGGGGAGATTTATCCAGAGGT 2594293 30 100.0 38 .............................. ACACGGCATGGGGGGAAGGATTTGGGGGGGTTGTGAGA 2594225 30 100.0 34 .............................. GTCTGGAAGCTGGCCATGTTGTTCTACAACGCTT 2594161 30 100.0 36 .............................. TACGTTGGGGCAGACCCCAATTCCGGAGGGTCGCAG 2594095 30 100.0 34 .............................. CGTGACAGTCTTCGGGCCGGTCGACGACCAGGGC 2594031 30 100.0 35 .............................. TTCTGGACGCACCTTCTTCACGTCGTAAACCCCGG 2593966 30 100.0 34 .............................. AGCAGTCAAATACCGAACTCGCGCTTGAAAATCT 2593902 30 100.0 35 .............................. GCGGAAATCGTAGTCGAACCCACGCCCGACGACGA 2593837 30 100.0 36 .............................. GTGGACGGGGACGAGTCTATCACCATCGACAGCACC 2593771 30 100.0 47 .............................. GGGCGCGCCAGTGAATTTCGTCGTCATGTTACATTCAAGAGCAACAG 2593694 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================================== ================== 25 30 100.0 37 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : ATCACAGCGTACCACCGATATCTAAACGAAGCGGCTGCACTCCACTACAACGATGGGATGTTCGACGAGTTCCTCCGATACGGCGACCAAGACAACTACGCTGGTCCCGATGCCCTTTCGAGATGGTACCGGCGGAACCTCCGGATGATTCACAACATCTGGCGGGCCGTGGACGAAGACACTAACCGTGTTTGCTTCGTCGTCGGCTCCGGACACGTCCATATTCTCCGGCAACTCCTCACCGAGTTCCCGCAGTTCTGCCCCGTGAGTCCGCTTCCGTATCTGCCCCGTGGTGAGTAAGCGGGTGTTGAAGATGGTGACGAGTGGATAGTAGTTGACTCGGGAGGTTAGGTGTGGTTGGTGGGTTCGAAGGGGGTGTCCGGATTGGCCGGATAGGCATTTCCGTCGACCCCCCGGGGGGTTGAGGGGTATTGGAGGTCGACGGAAACACTTGAGTGCGAACCGCCTGTAGAGTACTTGTGGCACTCAAATCGGCCATG # Right flank : TCTGGGTCGACCGGCATCAACAGCTCGGTCTACGGTTACAGACGAACGCCTCTGTTTAAATCCTCAGTAATTGATACAAACTGTGTGCTGAATATAGAGGGTGCATTCAGCAACTCCACGACTGGCTGTAGGAGACTCTGATGGAGAAGCACGACTGATCGTGCTGAAATCGGAGTAGGATACCAACCTCGGGTTATTTCAGGACGTGATACATTGCGAAACTGGGAATGCGGGTATTCAGATGGGTGGTTAACCGATACAGACAACTCGAAAATATGGCGTCACACCCTGCAGTAGCTGGAGGACCTGAGATTGCAGTTGACCTGACTATCGTACTGGGTCTTTGGTGCCTCTGGGTACTGATAAGTAGGGGTGTAGGTGCGGCTTTAGATTTCACTCCACTCATACTCATCCCACTTGGTACCGCTATTGCGTTTCTGCTCATTGATACAGTAGTTAGTCGGGTATTTTGACAGAGGCACGATGCAAACAGTGGACTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 185255-183775 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007554.1 Haloferax mediterranei ATCC 33500 plasmid HMPLAS1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 185254 30 100.0 35 .............................. ATCCGGTCCCAGTAGAGCGCGTAGACGCCGAGGGC 185189 30 100.0 37 .............................. CTTTGTCGGCGAGGACGAGCGCGCCGGCTTCGAGCGT 185122 30 100.0 35 .............................. GAGCTTGTCGAAGACGATTGGGTCGCTCACACTCC 185057 30 100.0 34 .............................. CGACAATATTCGACCAATTGGACATATGCATCCT 184993 30 100.0 37 .............................. GCCCGTTTAACTAATAATGTCATGGTTCGGAAAGCGG 184926 30 100.0 36 .............................. TCGACACGACAACACGACTCGATTCGCCGTACGACG 184860 30 100.0 36 .............................. TACACCGGACCCGAACTCGACGTGCACGTGAAGCCC 184794 30 100.0 36 .............................. TCTACCAACTGGTTGGGTGCTGCTCGGATATCTCTC 184728 30 100.0 34 .............................. GACCGGGACCCGTGATGCTCGACAAGGTTGTAGT 184664 30 100.0 36 .............................. ACGCTCGGTCCCGGCGAGACGGCGACGTTCGCGCCG 184598 30 100.0 36 .............................. TAAACGCATCTAATGAGTTATCAGACTCGTGGACTG 184532 30 100.0 39 .............................. ACCTCATAGCGCGGGTCCGCCCGTCTGGGTTGGCGTCTG 184463 30 100.0 38 .............................. CTTGACAACGGCTTTGACGGTCGGACAATGACCTATCC 184395 30 100.0 37 .............................. TGTCGTGACTGCGCCCACGTCATCACTATCGGTGATT 184328 30 100.0 34 .............................. CTCAAGAGGTGGCTCTAATGGGAATCAAGCAGTT 184264 30 100.0 38 .............................. AGCGTCGACGACGTGCTCGACCGACTGGAGTCTGACCC 184196 30 100.0 36 .............................. CGCGCACGGCATCCACGTCGACGAGCGGGACGCCCG 184130 30 100.0 38 .............................. ACGTCCTCGGTAGGATGTTTCGCCGCGAGACTCTGCAA 184062 30 100.0 34 .............................. GGGAACCGTTGAGGTCCTCGTCGATGATGCGAGC 183998 30 100.0 34 .............................. ATCGACCGGAACACGCGAACCACGCTCGGCGAGC 183934 30 100.0 35 .............................. ACTCCAACGAGTTCATTAATCCCGATGGGGAGGAG 183869 30 100.0 35 .............................. TTACAGACGATTCGGTCGACAGAACCCTATCGCCC 183804 30 80.0 0 ..........C.....T.CG..A.....T. | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 99.1 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : CTCGAACAGACCGTGGAGCATCCCCGACTGAATCGGAAGGTGAGCTATCAGTATCTCCTCAGAATTGAAGCGTACAAACTGAAAAAGCACCTCCTTACGGGAGAGGAATATGTACCCTTCAAGCGGTGGTGGTAACCCGTGGTGTACATTATCGTCGTGTACGACATGCGGGCCGACCGAACGCGATTGATGCTCAACTTCCTCAGAAAATACCTCACGCACGTACAGAACTCCGTCTTCGAGGGCGAGGTCACGGAGGGTGATCTGGAAACGATTCGGAACCATACGCAAACGTTACTGAACCCGGACGAATCGACGATTATCTACCGAATCGGGTCTGAGAAATACGTCGACCGAACTGTTATCGGAGAGGACCCAACTGACGAGTCACGGTTTCTGTAGCAGTCGACCCCCCGGGGGGTAGAGGGGTATTGGAGGTCGACGGAAACACTTGAGTGGGAACCGTCCGTAGAGCACTTGTGGCGCTTAAATCGGCCATG # Right flank : CCGATTCCAAATGTGACAGGAGGAAATTCAGACCCATCGGTAAACTTTAAATTCCGTAGTCTGAATACTCTTCCAGTACATCTATCGTATAGAGTTTCGTTCTAAAAAACGACAGCCGGTCCAGATGGGTGTTTACTCCCCTTCTTTGACTTCGTAGATCTCGTCGGCGGTAAAGCCGTGCGCTTCCCGGTGGACTTTCTCGCCTGCCTCTTTGTTCGGCGCTTCAAAGAGGCAGAAGACCGCACCTTCGTCCTCGTCCAGCCAATACTTCTTGTAGTTCACCCCGTACTTGTCTTGAATTTCGAGGTCTTGCCTGTGCGCCTTAACTGCCTCCTCAGCGGTGAGCCCCTCTATGTCCCTGTGAACGTCCATGAATAATGGCATGGTTGTTGTAGTGTAGCACGTCTCACACCATAAATACACATTAATAATTGTATGAATGTAGTCACAGATATGACTGAGTTCATAATCCTACCACGGATTTGATGGCGGGCAGGTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 195399-196089 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007554.1 Haloferax mediterranei ATCC 33500 plasmid HMPLAS1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 195399 30 100.0 35 .............................. AGTCACATGGGAATCCGGGCGCGACGGTCTCAACT 195464 30 100.0 37 .............................. CGGAACCGAGGGACGCCTCGGCACGCCCCCTGAGAAT 195531 30 100.0 35 .............................. AGGTCTCCCCCATCAACCGAGAGTGTTACGTCGGT 195596 30 100.0 35 .............................. CCGAACCGGGTGCCAGCTCATTTTGGAACACCCCC 195661 30 100.0 35 .............................. CTGCTCCCCATCGGGATTAATGAACTCGTTGGAGT 195726 30 100.0 36 .............................. TTCTTTATTCCGCCGCTCCGAACGTCCACGAATATC 195792 30 100.0 38 .............................. ATCCCGCCGAGAAGGTGGCAGGCGCGCAAGAACGCCTG 195860 30 100.0 36 .............................. CGACTGCCGGAGGACGTGAACGAGATCGTCCATGCA 195926 30 100.0 36 .............................. GACATCGTCGAGTCGCCTCTTGAGACCGCCGCTCAG 195992 30 96.7 38 .................G............ GTCGCGAACACGTGGCACGTCGTGCCAATCACGGCCGG 196060 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.4 36 GTTACAGACGAACCCTAATTGGGTTGAAGC # Left flank : GAGAGCCGTTTGTTCGTTTCATGGTGGTCCATGCGTAGCTAACCAAAAGCCATAGATGCGTAGACAGCAAATCCGGCTATGGTTGCTGCCCTACACTTGGCAGTGGCTTATTTGTCACGCCCTGCCCTCTTGCACAAGTTTGGGGCGTGACTCAGCTACGCACCAGTGACAACTATTCGCATTCTCTTAACTCTTACTAGCGTGTTGTATGAAATTGTATCAGTAGATCGGGAGCCAAACATGGCCAGAGAAACCACATAGAGCAACAAATCAAATGATATCCAGAATGTGATTCCAATACTCAATCCTTGAATGAACACCAGCCAAGTAGTACTCAAATGAAAGAATAACCAACTCAATTGGTCAGAGAAGACCGTTCGAGTTGGAAGCTCGCTTTCGCTTCCGTCGACCCCCCGGGGGTTCGGGGGTTATTGGAGGTCGACGGAAACTGTTGAGTGGGAGCAGTGTGTAGGGGGCTGTATGCCCCTGAATTGGGCATG # Right flank : CGAGACCAAGGTCACGGACAGTGACGTTAGTCGTCGTTACAAAAGAACCACTATCGACAGGAACAGCAGCGAGAGCGCCCCCACTAGGAAATACCCAGTAGCGTCAAGTACACTCAACACAGCGATTGCTAACGCGATATAAGCCGGGTTCCGGGAAACACAGTATTACTAACCGGAACCAACACCGTCGCTCGAAATCCCTCAAAACGCCGACCGAAACCGACGACCGGAGTCGTCAGTTAGCCAGCGGGACCTGCATCTCGCGTTCGGCTTCGTCGTCCGCGTCCACAGTTCCCTCGGCGAAGACGACGCCGTGGGCACCTTCTCGTTCTTTGGCGCTCGCCGCGACGCGGACGAACGTCGCGTTGTCGCGCGCGGCGGAAATCGTGTGGCCGCCGCAGTAGCTGATTCCGGAGCGAACGCCGCCGAGGAACTCCTCGACGAGCGGTTCGACCGAACCTTTGTAGGGCGTGAGAGCTTCGACGCCCTCGCCGGTTGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAATTGGGTTGAAGC # Alternate repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //