Array 1 1234594-1233406 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134390.1 Fusobacterium varium strain NCTC10560 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1234593 29 100.0 36 ............................. TGGGCCACATACTTGTAGAGGTGTAAGGAAGTCTAT 1234528 29 100.0 36 ............................. TATAGTCCACAGAATTAAAAATCATTTCGTTAATGT 1234463 29 100.0 36 ............................. GGTGTAAAAATAATTTTTAAAGGAGATAATAAATGA 1234398 29 100.0 35 ............................. ATATAGCTCACTTAAATCAGTTGCTATACTTAACT 1234334 29 100.0 34 ............................. AGTTTCTCATACTTATCTCTTAATATATTGCCTG 1234271 29 100.0 34 ............................. CAGTAGTATAACTATATTCATAAATACATTCATA 1234208 29 100.0 36 ............................. ATTAAAAGAAATTCTAAAATTGAATCTAACACTGCT 1234143 29 100.0 36 ............................. GACACAGGACTTAAAAGTATTAGAAAGACTAAGAAA 1234078 29 100.0 35 ............................. TATAAGTTAATTCAGTATCTCTTTTCTTGACCAAT 1234014 29 100.0 35 ............................. TCTACTGCTCCTGTCATACTGTAAAACGATAAATA 1233950 29 100.0 36 ............................. TTATATATATAATCCTTTAGGTCCTTTATATTTAGT 1233885 29 100.0 36 ............................. ACACTTTTAAGAACCTTTAACATTTCAGCATTTTCT 1233820 29 100.0 36 ............................. TATAATAACTCCTTATATTTCAGCTTTTTTCGGAGT 1233755 29 100.0 36 ............................. CATCTAAACCAGCTTAAAACTATAAGAGGTATTCCT 1233690 29 100.0 35 ............................. ATACAAAGTAGTATTTGAATAGAAATATTATATAA 1233626 29 100.0 35 ............................. GCAAATCCTACACATAAAAAAATGTGTAGGGTTTT 1233562 29 100.0 36 ............................. AATAATTGAAAATGCAGATAATGGAAGAGATGTAGT 1233497 29 100.0 34 ............................. ACCTCTAGTTGATTCGATATATCAATTGCTCCAA 1233434 29 79.3 0 A.......TC....GAT............ | ========== ====== ====== ====== ============================= ==================================== ================== 19 29 98.9 35 CTTGAATAGTAACTTGGAAGTTTTTAAAT # Left flank : GAATTGTATTCTCCCTTTTCTCTCATCTCTCTAAAAGTAGTTATTCCTATTATTGGTTTCAATTATTTTTCCTCCTCAACATCTCTTTGTTCTATTACATTCTACTATATAATATACTCTCTAGCGAAAGTTTTTACAATACAGAATTGAAAAATAATCTCAATATATATTTTCACATATAGCTCAATTTTGAAATATTTCATATTATTTTAATAAAAACAAACAAATTTTTCTAAACTTTTTAAATTTTTATTAATATAGTTAGGCAATTACAATATAAGAATTTTGTTATATAAAAAATAAATTACTTGTATATTCCTACAACATTATAATTTTTATTTTCCAAGTTAAAAATTGTATTTTTTACAATAGCATTCTTTAAGATTATTTATTTCAACATCAGTAATTTATAGTATATTTGTTGGAATTTTTTTACTTAATATGTTATAATTTGTACATTAGCAAGCAATAAAATATTAAGAAAGTTTAAATTTATGACC # Right flank : ATACTTTTCCATCAAATTCTTTCTCAGCAGTAAGATTGAATCTCAACTCATAAGTTTTCTCCCTTTTTCAAATAAAAAAGAGAAGAACTGGATATTAGCTCATGACATTTTGCTATATCTTCAACTTCTCTAAAATTTCAAATTCTTATTTTATTACATTCTTAATGTTAATTATTTATTATTAATTACTTATCGAATAAAATATCAAGCTCCATTAATAAGTCATTATATCTTTTTAATTCATGATTTTTTACTGGAATTAATAGATTATAAATACAATGCTGAAACACATCTGCATCTTTTAGTAATTCATCATATTCTGAATCTATCCTTTCCTTATTACTATGGTTGTGAATGGCTGTACAGATTATATCAATTTCTGTAGAAGTTGCCACCTGTAATTTTCTAATATTTTACGAGCCATAATTGCTCCTTTTTGTCCATGATCTTTTGAATATTCAAATTTATAAGTGTATATATCATGTAACATTCCAGCCATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAATAGTAACTTGGAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 1477225-1475641 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134390.1 Fusobacterium varium strain NCTC10560 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1477224 29 100.0 35 ............................. TTGAACAATAGAAGTACTGATCTTCCTAATTTCTA 1477160 29 100.0 36 ............................. GGGTTATGTACTACTAAGTCAGGAGCAATGGAAGGT 1477095 29 100.0 36 ............................. GGCATATCCTCTATCTTATTTAGTTTATCTAACTTA 1477030 29 100.0 36 ............................. AGGTATTCTAATAAAGAAGTTAGAACATTTAGATAT 1476965 29 100.0 36 ............................. AGAAAAAATATTATCAGTTCCAGATAAGATGTTTAG 1476900 29 100.0 36 ............................. AAAATATACTGAGCCACATTCAATATTTTTTCCATA 1476835 29 100.0 36 ............................. TTTTTAGGTGTTGCAGGGTATAGAGGTGTAAATGTA 1476770 29 100.0 36 ............................. TGAAATTTAAAGTAAAAATTAAAGAAACTCAATTAG 1476705 29 100.0 36 ............................. ATTTGAAAATCATTATGAAAATGTAAGTCATGAAAA 1476640 29 100.0 37 ............................. TAAAAATATAACTTATAGTCCAGAAGCTTATTTACTA 1476574 29 100.0 37 ............................. TCTCCCTGTTCTATAAGAATATTTTTTCTTATGTCCA 1476508 29 100.0 35 ............................. TATGTAAATTCATATTTTTTTAAAGATGCATGGAT 1476444 29 100.0 36 ............................. AAAAGGAGAAATAAAGCTAAGAAAAAAAAGAACAGA 1476379 29 100.0 36 ............................. TACAGCTTTCTAGCCATTATTATTTCTTTGTATGCT 1476314 29 100.0 35 ............................. TTTTGAAATTTTAGGTTCATTTCTTCTGTAGTCAA 1476250 29 100.0 35 ............................. ATTCAGATATAAAAGTACCAGCTCTGAAAGTTTGA 1476186 29 100.0 35 ............................. TTTTACCCCCTTAACTTTAAAAATGCAATTAATTT 1476122 29 100.0 36 ............................. CCATTAATAAAATCCATTACTGCACTATCTATTTTA 1476057 29 100.0 36 ............................. ATTCTTATTTTGTCTAATATTTTATATCCTGTAATC 1475992 29 100.0 36 ............................. ATTCTTATTTTGTCTAATATTTTATATCCTGTAATC 1475927 29 100.0 35 ............................. GGAATTAATAAAACAAAATGGTTCATGTGCAGGTG 1475863 29 100.0 36 ............................. AAAAGTATTATTTTTTCTAACTTCATTTTTCAAATT 1475798 29 100.0 36 ............................. ACCAACTTATAAAATTATATTTCTTGCTAGGAAAAA 1475733 29 100.0 35 ............................. CATATATAACTACTGCTACTGCTATTTGTTACAAA 1475669 29 96.6 0 ..............C.............. | ========== ====== ====== ====== ============================= ===================================== ================== 25 29 99.9 36 GTTGAATAGTAACTTAGAAGTTTTTAAAT # Left flank : GAAAATAAGGAATTTATTCCATTTTATATGAAGGAAAAGATGTAAATGAAAGGTAAAAACTATAACTATGTATTTCTTTTTTACGATATAAATGAAAAAAGAGTAAATAAAGTTTTTAAAATTTGTAAGAAGTATTTAAGTCACCACCAAAGATCTGTATTTCGTGGAGAAATAACACCTAGCAATTTAATAAAAATGCGATTAGAATTAAAAGATGTTATTGACAAAAAGGAAGATTTTATAAGCATTGTAAAATTGATAAGTGAGCATTATTTCGATGAAGAGATAATAGGAACACCTTGGAAAGATGACGAAAATATATTTATATGATTTCCAAGTCCAAAAGCTAATAATTTTATCAAATAATTATTTTAAAAGGGATTGAGAAGAAAAAATTTATTTGATAAAAATTCTAGTAAGCTTGGAAAAATAGAAAGAAAATCCTGATAAAATCATAGTTGAAGATATTAATTAATAATAACGAGCTTGATTTGATGAGT # Right flank : AGAAAATATTATATCGTTGCACATGTGCAATGATATGATAGAATATAAATTTATTAACTAAATATAAAAAACAGGCTAAGAATTTTTCAGCCTGTTGTTATGATATTAGCAGTTCCTAAAAATTGATTTTTAAAGAATAAGTATAAAATATCAGTATCTAAAGGATTGTATTTAACAATAACTTTTTTTCCTTCCAATGTGGTTAAAAAATTATTTGTATAGATAAAATTATTAAATCTTAAAGAAGACTTACTTATTTTTCTGCTGGCTTCCTGAAGAAAGACATCAAATTCACGAACGTTTGAAATATTTTCTACCATTCCATATTTGAGTGTAAAGTCATATTTTTGATTATCTAAATAGATATATGAATCAAGAAAACTTTTCAAATTCTGATATGAAAGATTTTTATTATTTTGGTAATAAAATTTTTCTATATCTTCTTCTAGAAAAGAGATAAACTTTTTAATTTCTTCATTCTCACTAAAATATTCAGTTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACTTAGAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 1486330-1487072 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134390.1 Fusobacterium varium strain NCTC10560 chromosome 1, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1486330 29 100.0 35 ............................. TTTGATAAGAGGAGAGAGAGCTATTTTTTAAATAT 1486394 29 100.0 37 ............................. CAGGTGAACATTTTGATAAAGTTTATGAGGAATACAA 1486460 29 100.0 36 ............................. AATGACTATAGGTTCTATATAAACTTAAAATTTTAA 1486525 29 100.0 36 ............................. TGGAATAAAAGGAAGTATGGCTGGAACATCTTTAAA 1486590 29 100.0 36 ............................. TTTTTTAAGTGCATTTTAAGTGCAAAAATATAAAGA 1486655 29 100.0 36 ............................. TTTTTTAAGTGCATTTTAAGTGCAAAAATATAAAGA 1486720 29 100.0 35 ............................. AGAAACAATTCATCTATTTTTTCACTTTTATTAGA 1486784 29 100.0 35 ............................. AGAAACAATTCATCTATTTTTTCACTTTTATTAGA 1486848 29 100.0 36 ............................. TATTTACACTAATTTTTAAATTTATCAAAATATTTT 1486913 29 100.0 37 ............................. AGGAAAACAACAAGAGCTTTTAAAAGAAGCTTTTTTA 1486979 29 100.0 36 ............................. TGTTAGTTTTGCTTTTAATGTAGGAACTAAAGCATT 1487044 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 100.0 36 ATTTAAAAACTACCAAGTTACTATTCAAC # Left flank : ATCAGCCCTTTTAATTCTTTTGTTATATTGTCTTTCAAATATTTCATAAAATGCTCTTTCAATTCCTTAGAGATAGTTCGTATCTGAACTGTATATATTTCTCCAGCATTGTATTTTTGGGCATTGACTTTTACCGGATAGAAAGAATTAAAACAATATTCTTTTACTTTTTTATCTTTATGATATTTTTTCCAATATTCACTCTTATCAAAAGTAGAATCTATGAGAGCTGCTATTTTTTCTATAGCACTATGTGATTCTATATCTTCCAATAAAAAAACTTTTAATTCTAAAACCCAACTTTCCATTTCATCCCTCCTTTTTAATACTTAATATTAATTATACCTCATTTTTTAATAAATAATAGTCATTAATTTAAAATTTTTAATTTTTTAAAAGAATTTTTTTATTTAGATTATCATCTCCTATCATTTTAAAATTTTTATTATAAGTTACTATTCAACTGTAAAATCAATCATATAAAGACTCTCGACTTTGCT # Right flank : CCCTCATCAAACTAAACTTCATTTTTTATTTTTTCATCTTTAAACCATAATTTTACCAAAATTTTATCTTTATTTTTCCAAGTTCATCAAAATTTTTATCAAACAACTTTTTCTTTCTCAATTTACTTTGAAATCTAGCTTAGAAAAAATTGTACTATTTTTTACTTGGAAAATTTATTTAGTTTCTAAATCTACTAAATTTATTCCATAAAAAATTCCAAGTGATCCTTTTTTTATGTTAATATTCATACTCTTTTTTCCCAAATACTTATCATAAAACTCCTTTTCTATAAGGAATTTTACCTCTTCTCCATTTACATCAGCAATTAAATAATAAAAATTAATATAATATTTGCTTCCAGGTTTTTTAAAATATCTTTTCTGATCTATAATCATTTTTATAATCTTATATTCTTTTTGCTCTCCTTTACTTCCTATTCTATTTATAAAAAACTTTATTCTCATATAAATATACTTAGCAATAAAACTTCCCAGCCACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAAAACTACCAAGTTACTATTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //