Array 1 6274-6485 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUOB01000045.1 Goodfellowiella sp. AN110305 contig_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6274 29 100.0 32 ............................. CAGTACGACTACCGGTGCCCACGCTGCCGCTG 6335 29 93.1 32 ...................G.G....... GAATCATCTACGCCGACGACCTGCCCCATCGC 6396 29 89.7 32 .........G.......T...G....... ATCGTCATTGACGCGATCCGCAACCGCACCAA 6457 29 86.2 0 ...A....................A..GA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.2 32 CTGCTCTCCACGCATGTGGAGATGGTCCG # Left flank : CAGTTTCGTGTCGCCCCGCGTGCCCAGCGACCGCCGCGCAAACCGCCGTCAGTCCGTCGCGTCGTCGGTTGGATCATGACCGACCCGCAGAACATGGACGCCACCGACCAACAACGCCTGGATGCCATCCTTGCGGCCAGCACGCACCTGACCGTGCTGGCCGGCCACGTCCGCGCCTTCGCCGCCATGATGTGCGCGCGCCGCGGGCAGGAGCTGGAAGCGTGGATGGCCGCCGTCGATGCCGACGACCAACCAGCCCTTCACTCCTTCGTGCGAGGGCTCCGTAAAGATCAGGACGCGGTCACCGCCGGACTCACCCTGCCCTGGAGCAGCGGGATCGTCGAAGGCCATGTGAACCGTGTGAAGATGCTCAAACGCCAGATGTTCGGCCGCGCCAAGCCCGACCTGCTCCGCAAACGCGTCCTGCTCGCCGACTGAGCCGAACGGCCAGATCACGGAAACCGTGCCAGAACCCGGATTGGACCGTCGTTGACACAGCC # Right flank : ATGGCCTGGGCTTTCGCCCAGAGCCAGCGGGCCCTCAGACCGTCGAGACGACAAGATTGGAACTTGCGCCCGCTTGGCCCCCAGGCATTTTGTGGGGTCAAACGACCTGGTTCATGCGGCCGCTGAGCTGGGACGAAACGTCCGGCGACGTCCGTGGACGTCCGCCACGATCCTGCGGGGTTGTCACGCAGTTAGTCACCCACTGGAGGCCCGGCTACCTGCGCACCTTCAGAGGCACAGCATGTGGTGACGGTGTGGCTGTTGCTCACCGTCGCGATGCGTGCCGACTGAACTAGGAGGTACTGCACACGCGGTCGAGTGTCTGCCTGTCCGCGTCGGCGTGTTCCTGAACAGATTCCGAGTTCAGGCCCCGGTTGTTGAAGGTTACCGCGAGTTCGGAGAAGTCGTTGTACAGTGCAGAGAGAGACGAATAGGCTTTACTGTACTACCCGCCGAAAGGCGCAGGATTAAGGACTGCAAGTCCGCAGCTGTCTGGCGTG # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCACGCATGTGGAGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2837-2440 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUOB01000131.1 Goodfellowiella sp. AN110305 contig_131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2836 29 100.0 32 ............................. TTCTCCGAGGTCTACCTGTGGCAGCGGCGGCT 2775 29 100.0 32 ............................. GCCGGCGTGGACGGCTCGACCCAGGTCGTCGC 2714 29 100.0 32 ............................. ATCACCGACATCCTCGCCAACGTCAAGTGGAT T,C [2695,2709] 2651 29 93.1 32 ....................A.......C TCCAGCACGTCGGCCAGCACCACCAGCACCGG 2590 29 93.1 32 .C..........................T ACGGTGTCGGAGATCCAGCGGCGCTTCGAGTC 2529 29 96.6 32 ............................T GGGCCCAGTCGTCGATCTCTGGGGCTGCCAGC 2468 29 75.9 0 TCG......A................GGC | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.1 32 CTCGGCCCCGCGCGAGCGGGGATGTTCCG # Left flank : GTGGGACGTGGACCGGGATTCTTTGCCCGGTGCCGTCAACTGGTCACTGGACCCCGACAGCTCCGACGGGGAGCACGTTGTCGTGATCGGCCCGGAGTTCGCAGACGCCCTGCCGCAGAAGGTGGACTGGTGACGGTCATCCTGCTCATCGCCGTCGCTGAAGGACTACGCGGGCACCTGACCGCTGGATGGTCGAGGTCTCCGCCGACGTGTTCGTGGGTACGCCGAACCGCCGTGTCCGGGAACGCATTTGGGAGTTGCTATCGGAGCGAGTGCATGATGACAGGCGGTCATGGTCGAGCCCGCCAACAACGAGCAGGCTGGACAGTCCGCACCGCAGAGCCGGACCGCTGGTATCCCGTGGACTACGACGGACTCGTGCTCTCAGCTCGACTTCGCAGATCGCTAAGCTCGTCACAGTGCCGTACCAACAACAAGGCCCATCGCACACAGTGAATGAGAAACACCGTTTCTGATACTAACAACGCAGGTCGCGAAGC # Right flank : TCACCGCTACACCGATCTGATCTCAGTTGGCAGCGTAGAAGAGTGCACTACCGACTGGGCTATCGATTGACCGTCACACGCGGAATATTTCGATACGCCACGGTGCCACACGGCATCACTCAACCCGTTAAAGGCCCTTTCAGTATTCATCTATCGGCACCGCCACGTCACTTTTCACTCTAACGAGCACTTGAACTGACCGTAGAATACAACCTAACGCAACTGGAGACAAGGAAGCTAGACAATGAATAAAGGATCCACATACAAGCGATGCGGGTGCCAGGACCCTGCCTCAGGGAAGAAACTGGGCGCTTCCTGCCCGAAACTACGGCGAAGTGATGGCGCTTGGCATCCCAACCATGGCGCGTGGCACTACCGCCTCGAACTGCCTGGCGACGAACACGGCAAGCGGCAGATGCTCCGCCGCGGCAGCTTTGGCTCACAAGATGACGCCCAGGACGAGCTGAACCAGGTGCACAGCCTGCTCGCCATCCCTGACC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCGCGAGCGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12480-12085 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUOB01000131.1 Goodfellowiella sp. AN110305 contig_131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12479 29 69.0 32 G.CT..C......GA.C.......T.C.. CCGGTCGGCCGCCGTGCCAGGGTACAGGTGCC 12418 29 79.3 32 GCCC..........G.C............ AGCAGTACGACGGGACCGCGTCGCGGGTCCAG 12357 29 96.6 32 .........A................... CGCGGCATCGTCGCCGACACGACCCTGTGGGA 12296 29 93.1 32 ......A..A................... ACCCATCTCTTCATGCCGAGGATCTACTGGAA 12235 29 100.0 32 ............................. CAGGTGTGCGACGAGATCGAGGCGATCGGCCT 12174 29 89.7 32 .........A..............T.C.. AGACACCATGATCCGCGAGCCACGTGCGTGTG 12113 29 75.9 0 G.CC..........G.C.......T.C.. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 86.2 32 CTGATCTCCGCGCACGTGGAGGTGGTTCG # Left flank : CGACCACCGAACTCCGCATCCACCAGCTCTACGAACAGGTCAACAACCACGAACGGCTCGACCGTCGCACTGCCCCCCGGCAACGGCACCACACCGACACACCGGACGACTACGAGGACGCCGACGCGCTCGACCACCACACCAGCCATCATCAGGGCACTGGATATTGACCATCACAAGGGAAGCGACGCAACGCCTGACTGTTGAGGCCTCCCGTCGCAGGCGACAGCCACGCGACCCTGAACAGCACCTCTTCCAACCGGTGGCGCACGATGAGGCACACCATCGGATCGGATCGCATCACACGCCACACGTCACACTCAGACTACAGTGAATGAGAAACACCGTTTCGAATAGCGTTAAGGCAGATCACAAATCCTCGGCCCCGCGCGAGCGGGGGTGTTCCGCGCGCCCACATCGCACGCATCGCAACCGCTGGCTCTGCCCCGCGCGAGCGGGGGTGTTCCCACGCGGTGGCCGCCGCAGGACCTGGTACTGCG # Right flank : GCTGGCGAGATCACCATCGTCGCCGCCGCGTGTCTTCCCCACGCGAGCAGGAATGTTCCCAGGCGCGCCCCGGGGACCGAGAGCCAGCCGAGGTCTTGCCTGCTCGAGCGGGGGGTATTCCCAGCTCATACAGCGGATCCCCGGCCGGGTCGTCGTCTTCCCCGCTCGCGCGGGGATGTTCCGTCGAGGTTCGCCGGCCAGCCGACCAGCGACTGCTCGGCCCTGCGCGAGCGGGGATGTTGCGGTGGTGCCGCCGGCCGCCTATGCGGTGCAGGACTCGACCCCGCGCGAGCGAGAGTGTTTCCACCCGGACGGCTATGCCACAGTCGTCGCTCTGCACGGCCAACCCACAACTCCAGTCTGGCCACTGAGAATCACCTCTCGACGCTACTTCCGCATGCCAGACTCCAAACTCCTCCGGACTACCCTCTTCATGAACCAGAGAAATAGAGACCAGCCACCAGCTTCAGAGACCTGCAATATTGCAATCTCGCACTAAC # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATCTCCGCGCACGTGGAGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCTCCACGCACGTGGAGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43437-38896 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUOB01000075.1 Goodfellowiella sp. AN110305 contig_75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43436 29 100.0 32 ............................. AGGCGGGTCAGGACACCCTCATACGCCCGTTG 43375 29 100.0 32 ............................. TCCTCGTCAGAGACCTCAATCGTGACCAGCGC 43314 29 100.0 32 ............................. CAGTTCGACTTCGCGGTGCCGCTCGCTGCCGG 43253 29 100.0 32 ............................. CTCACCAACGGCGTCGACCAGGCAACGGTCCC 43192 29 100.0 32 ............................. TCGCCGAGTTCGGTCTCCTCAGCCACGGTAGG 43131 29 100.0 32 ............................. TTGACTTGGTCAACGTCGAGTTGCCGGTACAG 43070 29 100.0 32 ............................. ACTGTCCTCGCCGGGCGCGGAACTCCCGCCGC 43009 29 100.0 32 ............................. CCTGTCAGGCACCCGCCACCGCCCGCCGGTCC 42948 29 96.6 32 .......................C..... CGGCTTCCGGCAGCCCGTCGGGGTAGAGGGCT 42887 29 100.0 32 ............................. TGCTGGACGTCAGCAACGATGACGGCGACGCC 42826 29 100.0 32 ............................. TTGTAGACACCGGACTCCGCCGACCAGAAGGG 42765 29 100.0 32 ............................. GCCGTCGACACCCCCTCACCAGGGCCGGCTGG 42704 29 100.0 32 ............................. CACACTCCGGTCCAGTCGGATTGGCTGACGTT 42643 29 100.0 32 ............................. CAGCATCAAAGCCCTCTTCCGGACCTACAAGG 42582 29 100.0 32 ............................. GGGGTTTCGCCGCCCTCCAACGCCCGGAGTTC 42521 29 100.0 32 ............................. GTACCACAGTGGACCCCGGCAACCCTGTGACC 42460 29 100.0 32 ............................. TCGTTGAGAACGCCGCTCTTCGGGTCGCGGCG 42399 29 100.0 32 ............................. GCTTGCGCGCCACCACCACACCCCGTGCGGCA 42338 29 100.0 32 ............................. TTGGGGTGCTCCACTGGCAGTCTTTGCTGGCA 42277 29 100.0 32 ............................. CGGCGGTGTCGAGATGACCGCCGTCCGCGCAC 42216 29 100.0 32 ............................. ACGGTGGTTCCGGCGTTGGGTTCTCCGAGCGA 42155 29 100.0 32 ............................. TTTCCCCGCGAGCCGCGCCATTCCCCGGCCCG 42094 29 100.0 32 ............................. CTCGCCGAGCTCGCCGCCGACCCGGCACGGTT 42033 29 100.0 32 ............................. ACGGTCGGCGGGTTGCCGATGGCGGCCTGGGT 41972 29 100.0 32 ............................. GTTGTGGGGATCGGGCATCGTTGGCACCTCTT 41911 29 100.0 32 ............................. CTCCGCCGTCCGGAGGAGCTGGTTTCACCGCT 41850 29 100.0 32 ............................. TACTCGGCCATGTGCCCGGTGGCGATCTTGCC 41789 29 93.1 32 ........................T.C.. GACTACCTGGAGCTTGAGGCGTACGCCTCCGA 41728 29 72.4 32 G.CT.....G....G.C.......T.C.. ATCTCCACTATCTGGTTTCTGCCTCCCCCCGT 41667 29 69.0 32 G.CT.....G....G.C.......T.C.C AGCGCAGCGGCCTGGTCGACCAGCTCGGGGGA 41606 29 72.4 32 G.CT.....G....G.C.......T.C.. TGGTTTTCCGGTCAGCGTCAGAACCTCTTTCC 41545 29 72.4 32 G.CT.....G....G.C.......T.C.. CAGGGCACTGCTGGGCTCGGACCAGGCCCACG 41484 29 72.4 32 G.CT.....G....G.C.......T.C.. TCAGCGAGACCATGGCCGGCATCACCGCAGCC 41423 29 72.4 32 G.CT.....G....G.C.......T.C.. CCGTGGTGTCGGCGCATCTCTCGGTCCAGGAC 41362 29 72.4 31 G.CT.....G....G.C.......T.C.. CCAGGTTGACCGCTGGCCGTCGGGTACAACG 41302 29 72.4 32 G.CT.....G....G.C.......T.C.. TTGATGATCGCGGCCCGAGCTGTCCCTACCCA 41241 29 69.0 32 G.CT.....G....G.CA......T.C.. CCAGTCGTACCAGGCCAACATGCGCATTCGTC 41180 29 72.4 32 G.CT.....G....G.C.......T.C.. CTGCTGGACATCCCGCTCGACCAACTCACCTA 41119 29 72.4 31 G.CT.....G....G.C.......T.C.. TCCGACTCGTTGTTGCTGGCGTTCGCGCCGC 41059 29 72.4 31 G.CT.....G....G.C.......T.C.. GCACCGACCAGCCGGCTGATCTCGTCAGGCA 40999 29 72.4 32 G.CT.....G....G.C.......T.C.. GCCGCTCTCGCAGTACTGGCACTGCCGGTTCC 40938 29 72.4 32 G.CT.....G....G.C.......T.C.. GTGCCCAGCAGCAACGACCCGCCGCGCTCCGG 40877 29 72.4 32 G.CT.....G....G.C.......T.C.. CCCGAGGTTAGATTGGCGAATGGGCCTTCATT 40816 29 72.4 32 G.CT.....G....G.C.......T.C.. CCGGGGGCCGACCGTGGCCCGGGGCGGGTCGG 40755 29 72.4 32 G.CT.....G....G.C.......T.C.. TCGCCATCAGGTGGATGTGGTCATCCGCGTGC 40694 29 72.4 32 G.CT.....G....G.C.......T.C.. TCACCGCCCTTGCTCGCACAGGCCGGCGAGGT 40633 29 69.0 32 G.CT.....G....G.CA......T.C.. GCGGACCAAGCCCGCGGTCTCGCACCACACAG 40572 29 72.4 32 G.CC.....G....G.C.......T.C.. TACTCGGCCTCGTCCGTGTGCTCGGGGCCAGC 40511 29 69.0 33 G.CC.....G....G.C.......T.C.A GCGGCCCGTGTCGAGGCCCACGCGTGGATCAGG 40449 29 72.4 32 G.CC.....G....G.C.......T.C.. TTCACCGGCCGTGTCACGCTCCGCACAGTCCG 40388 29 72.4 32 G.CC.....G....G.C.......T.C.. TTACTCGTCAGTCTCAGCGCGGTGCCATCTCG 40327 29 72.4 32 G.CC.....G....G.C.......T.C.. ACCCTGTCCGTCGGCCAGGTCGACGCTGGGGC 40266 29 72.4 32 G.CT.....G....G.C.......T.C.. CGTTCTTTCCGGTCTTGCCTGTTCGAGTGAAC 40205 29 72.4 32 G.CT.....G....G.C.......T.C.. CGATGCAAAGCGCACTAGGTTGCTCCGTGTGC 40144 29 72.4 32 G.CT.....G....G.C.......T.C.. GTCGACAACACGCCCGGCGCGCTCGTGCGCCA 40083 29 72.4 32 G.CT.....G....G.C.......T.C.. TTTTGGCCGACTTGAGGTGAGCGGGTTGATTC 40022 29 72.4 32 G.CT.....G....G.C.......T.C.. GCGGTGGGGGACTGGTTCGCCATCCGGCTGGG 39961 29 72.4 32 G.CT.....G....G.C.......T.C.. TCGTCCCGTCCTCCGGGCCGTCGCTCGACGAG 39900 29 72.4 31 G.CT.....G....G.C.......T.C.. CCCAGACCGAGACCCGGCGATCGACCCGGTC 39840 29 72.4 32 G.CT.....G....G.C.......T.C.. TGGCTGGCCAACATGCAGGCCGAGGGGTTCCG 39779 29 72.4 32 G.CT.....G....G.C.......T.C.. CGTTCGAAATCATGCGCCACGTTCGCGCAGCC 39718 29 72.4 32 G.CT.....G....G.C.......T.C.. ACCCGCGCACGCGCGTCCCGGAGACGCTGGAC 39657 29 72.4 32 G.CT.....G....G.C.......T.C.. GCGGCACGTAGGTGGAAGGCCCGCGGCGTCCT 39596 29 79.3 32 G.CT.....G....G.C............ CCAGGTTCAACCCTATGGGCCGTGAACACGAG 39535 29 100.0 32 ............................. TACCTCGCCGGGTGATCGCACACAGCGCACGG 39474 29 96.6 32 .............G............... TACGCGTTCAACGTCGACTTCATCGGGTCGGC 39413 29 93.1 32 .............G..............T GCTGAAGCTGCTGTCCCAACGCCGCGATGGTC 39352 29 89.7 33 .............G......A.......A GGAGGACTTCACCGGCGAGCGGCGCCGCGAGTT 39290 29 96.6 32 .............G............... CTCATCGTCGAGCCCTCCACGCCCGCGCAACC 39229 29 93.1 32 .............G......A........ TGCCGTTCGGCTTCCCCGACCGCCCGCACCGT 39168 29 96.6 32 .............G............... CTGTGGGAGGCATGGAGAGGTGCCGAGAACAA 39107 29 96.6 32 .............G............... CCGCCGACGTCTACCTGGCCCGCCGGATCGCC 39046 29 96.6 32 .............G............... TCCGGGGGGAGCTGGCCTGGCGGATTCAGCGG 38985 29 89.7 32 ...........A.G...A........... CCCGACGGCGGAATGAGGTAGATCGCGCATCC 38924 29 89.7 0 ............TG............C.. | ========== ====== ====== ====== ============================= ================================= ================== 75 29 85.7 32 CTGATCTCCACGCACGTGGAGGTGGTTCG # Left flank : TGCACGTCGGCGTGCGCGCGAGCGACAACTACATCTACACCACCGGCCAGCAGGCACCCGGCGCGGCCGCTTACAGCGCCTGGCAGGAGATCACCGACAAGACCACCCTCACCTCCACCGACCCCACGCTCGTGGCGATGCCTGACGCCAGCACCTGGGTCGTCGCCTTCCGCAGCGACCTAGACGTGCCCAAGCTCCGCCGCAACCAACCCGCAGCACCGGCCGCAGCCACGCCACGCAGCCAATCCACCGCCCAGGCACCACGCTCGACCTTCGTCGACGTCCCGCTGAACGCACCGACCAACTGATCGCAGAGGGGGCGAGCCGCACGGTCCGCCCCCTCACGGCGGTACCGGCAGTTGCCGCCAGCTCGACGTCAACCTGAAGCAGGTGGAGATCGATGTCGAGTCGAGGTTGAACATGCAACTATCCAGCTATTGGATTAGTGTCAATTGCGGTCAAACGCTACGCTGCAGCCGGAAAACACCAGCTCACGAAGC # Right flank : GCCAGCAGCCGGTGTCCAGGACGGTAGCGATCTACGCGGCGCTACAGCGCATTGTGCCGCGCGAGAGGTAGGTCGACGCCAAGGAGGTGGAGCAGTCCGGCGGTGGGCACACGATATGTGTCACCCACCTTGATGACCGAGCAGGGGAAGATCCCCAAGCGCGCGAGCTCGTAGGCCTTGGTGCGGCCGAATCCGAGCGCGCGGGCTGCCGTCATCAGATCGACGGCGGCGGGCAGGTCACCCAACTCCGACAGTTTCAACGGCATCATGGCCTGGCTCCTTCCTTGTCTCGTGTCACGGCATCCACGACGCGGTGGTCACCTTCCAGGCACTCGGCGTCCGCCCAGTCGGTGATGCGGGCGGCGAAGGCGGGGCGCCATCGGTCGTGCCAGTGCTGGGCGTCGCGCTCGTTGGCCTCGGGCCCGAGGTTGGCCTGCCGCCACGCGTACGCGAGCGACGCGATCTCGGCGGCCAGCGCTGGATGCTGCTGCCAGCAGGCG # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATCTCCACGCACGTGGAGGTGGTTCG # Alternate repeat : TCTCCACGCACGTGGAGGTGGTTCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [55-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27425-26357 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUOB01000094.1 Goodfellowiella sp. AN110305 contig_94, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 27424 37 100.0 37 ..................................... ACCTCCTATGATTTCCACCAGTCGAGGATCGACTCTA 27350 37 100.0 34 ..................................... GCTTTCCTAGCGGAGCCGTCGACGGCGATGATCG 27279 37 100.0 37 ..................................... ATCTCGGCTGCGGGCGATTTCTGCGCCACGGTCAGCA 27205 37 100.0 36 ..................................... AAACAAGAACTCGACGGGGCCAAACGGGACGCGCAG 27132 37 100.0 35 ..................................... GAGATGCAGGGCGCGAAGGCCGCCGCCGCGAACGA 27060 37 94.6 38 .C...................A............... CGCCACCCGCACGGGCTCGCCCTGCTGCGCGAAGGGTT 26985 37 97.3 36 ..........................A.......... GCCGTTCTGCGCGCGGGCATCGTGCTCGAAGGGCGG 26912 37 81.1 37 .....G....C.C.C..G.A....C............ TACTCCGGCGCAGGCGATCCCGACCGGCTGAACGCGG G,C [26907,26909] 26836 37 83.8 35 ..........C.C.C..G.AT................ TGGTGCCATGACGGCATGCGCCAACCGATCGCCTG 26764 37 81.1 38 .C.G......C.C.C..G.A................. CTGCTCGGCGTTGAGCTGGGCGCCGCCGATGGTCTCGC 26689 37 100.0 37 ..................................... TCCAGCAGGTACACGGCGGTCTGCGAGCACTTAGTGA 26615 37 94.6 36 ..........G........T................. GCCAAATAGACCACGGCGACCACGCCGGCGACGGGC 26542 37 97.3 37 ...................T................. CCAGCCGCACGGTGGCGCAGTGGCTGTGGCGCATCAA 26468 37 94.6 39 ..........G........T................. ATCTTGTGCATCCGGTAGTGAGGCCCAGCAACTCACGAG 26392 36 70.3 0 ..........G....TC.ATT...C.T....T-..T. | ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 93.0 37 GTGACACCGGACGTTCGCGCCCGGTGCGGATCGCAAC # Left flank : GCAGGAAACTTCACCGACGTCACCGAAGGCCCACACCGGTTCCGCATGATCGAGGACGACACCGTGCCCGTCGCCATCACCTCGTACAAGTCGACCACGGTCACAGCGGCCGACGTCCCGGCACTGCTCGACGAGCTGCGTCAACACGCTGAACGGCCAGGACGCGCAGACCGCGTGACGCAGATACTGCGACAACTCCAGCCCTTTGTGGTGCCGATGCGTCGATCCGTGGCCAGCCGGCCTGCGGTTCGAGCACTGCTGGCACCGGTCGTCAGCGACGGGTTGTACGAATGGCGCGGCAGCTACAGCCTAGAGACAGGGCTCGAGACCGACACACCGTCGGAGAGCTTCATCGTCTGAGAGCGGGCTTGCTTCGGAACCCCTAGCGTCGTCTGACACACCGCGAGGTTCCGAACCAGAACCATGGTGTGTCGGGCTCACAAGCAGACGAATCGGGTTACCTTGACCGTTGATTACGGCAACATCCCTGCTCGGGCAGG # Right flank : CCACGTTGGGAATTGGCGCGGTTCTCCGGTCCGGTATTGCGGCTCTTCGATCTTGGCCGGGCAACCTGGGGTTGGGCCTGTGCGGCGCGCCTGAACCAGGGCGGCCCGTAGCTCCTTGATCCTCGCTGTGTCTTGGAGCAGCGAGAGGAGAGCCACGGGCCGTGGTTGACCGTAGCGATGATGCGTCGTGCTTGTTGGGCTTGGCCGGGTTGGCGGTGGAGCGTGTCGTGCTCACCGTGCTTGGGATGAAGATCGTGCAGGTGGTCACCGACGATCCGGACGCGGCCCGGTGCCCGTCGTGCCAGGTGTGCTCGACCTCGGGCAAGGACTGGGTGCTGACCCGTCCGCGGGACCTGCCGTGTGGGGGTGAGTTCCTGGTTGTGCAGTGGCGCAAGCGACGGTGGAGGTGCCGCACCGAGGACTGTCCGCGCGGGTCGTTCACCGAGCAGGTTGCCCAGGTGCCGGCCGGGATGCGCACGACGACCCGGCTGCGCGCGGCG # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACACCGGACGTTCGCGCCCGGTGCGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 30475-29860 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUOB01000094.1 Goodfellowiella sp. AN110305 contig_94, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================== ================== 30474 33 100.0 39 ................................. GCCAAGAACACGGGCATCCTGCCCCGCGAGTTCCGGTGA 30402 33 100.0 40 ................................. CTGGTGGTCGGTGTAGCCGTCCTTGCCGTCGACCTAGCAG 30329 33 97.0 38 ........T........................ GTCTACATCGGAGTGATCTGCGGCGGCTACACGAGCTG 30258 33 93.9 39 ......................C....A..... GATTGTCTTGGCGGGGACGTTGAAGAACGTGGCGAGTGA 30186 33 97.0 39 ....A............................ CCATGTGGGCAGCACGTGGCAGGCAGCGGTGGATCGCAG 30114 33 100.0 42 ................................. GCGCGCTTCTCGCCCTGAGGGATGGGCTGACCCCAGAAGCAG 30039 33 93.9 40 .................A....C.......... CTCGGCGGCAACGGCCTCCTGTGCGGCGACTCGGTTGTGA 29966 33 93.9 40 .............A........C.......... CTCAACGGGATCGATCGAGAGGAGCTCACTGGATGAATGA 29893 33 78.8 0 ...T............G...A.C......T.GG | C [29867] ========== ====== ====== ====== ================================= ========================================== ================== 9 33 94.9 40 CACCGGCCCTCCGGGACCGGTGAGGATCGCAAC # Left flank : CCGGTGAGGATCGCAACCGTCACGCCCCCGACCGAGACGACATCGGTCGACAGTG # Right flank : GCCGAGTGAAGGCGAGTCGTGTCTTTGTGCTCCAAGGAGGTTTGATTGTTCGCGCACAGCCCGTACAACGAAGGTGACTGGACCACTGCACACACACTCAAGAGCCATTCGGAAGGAACATCCAGACTGGGGACAGAGTTCGGTACCGCCTTCAGCGCAGGCGATCTGGTGGGAGCCGCTGGCCTGTGCCACGACACCGGCAAGGCGTACTGCCGGTGGCAACCAGGACTGGTCGCCGCGCACCAGAACAAGACAAGGGTGGGCGTGCCGCACGCCGACGTCGGTGCTGCGCTGCTGCCGCGGGCTCTGGGACCCGCCGCCTTGGCGATCCTCGGGCACCACAGGGGCCTGACGAAAATCGGCGACCTCGCCGACATCGGAACAGACCCCGCCGACGCGGCACGCATCACGGAGGCGACAGCCGCGTTTCTGACAGAGGTTCCGCAGGCGAAAGCCCTCCTCGAGTGCGATTCCCTGATCCCACGCCCATGGCACACAAG # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACCGGCCCTCCGGGACCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //