Array 1 279269-280041 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_008595.1 Mycobacterium avium 104, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	============================	====================================	==================
    279269	    28	  92.9	    34	C...........T...............	GGTCGGTCACTGCGGTGGTGTCCTGTGCATGCTC  	
    279331	    28	  96.4	    33	C...........................	TCCCAGGCGGACGCAGTGCCAGGGATGGCGAGT   	
    279392	    28	 100.0	    34	............................	CGAGGCCGTCGCGGAGGCCTTGACCGACCCCGAT  	
    279454	    28	 100.0	    36	............................	GCGCACCTCAGCTGCTGTGCTGCGTGAGCGCGTCAT	
    279518	    28	 100.0	    34	............................	CCTGCACCAGTCGATCCACTGCGACGTGCGCAGC  	
    279580	    28	 100.0	    34	............................	CATCCCAGGTCAGGAAGTCTGCTCCCCGCGTAAG  	
    279642	    28	 100.0	    34	............................	GGGCCTGTTGCTCATCGGCCCGCCGCGCTCGGGC  	
    279704	    28	 100.0	    33	............................	GCCGATACCGGGCTTGGCATCCGTGCCGTACTG   	
    279765	    28	  92.9	    33	C........................C..	CGTGCCCGGTGGAGGAACCACCTCTCCCCCCAC   	
    279826	    28	 100.0	    33	............................	GGCCGCAGAGGAGGCCGTCACCGCGGCGAAGAC   	
    279887	    28	  96.4	    35	C...........................	CCTCCGATCCAGGTACCGCGTCCGGAAGATGTGGC 	
    279950	    28	  89.3	    36	C...........T............C..	CCCCCGTCTGCAGCGCAACGGTTCCTACTGCACCTC	
    280014	    28	  96.4	     0	C...........................	|                                   	
==========	======	======	======	============================	====================================	==================
        13	    28	  97.3	    34	ATGCTCCCCGCGCAAGCGGGGATGAACC	                                    	       

# Left flank :   TGGTCGTGGCGCTGGACTGCACCGCGACCGGTTGCCCGGCCACGCCCGTGGAGCATGCCGACAACACCACCGCGGCGGCGATGCCGGCGGCGGCTGCTCCAAGTCGCGTCTTCGTGCTCATGCGTTCGATTTTGGCAGATGAGGCCGAACAACCCGCCGATGCGCGTGTCACGTCCCCCATCCGGATGCCTTGAGCGCGCGCGGGATTCATCGGTCGGCCAGCTCTACAAGGCGCCGTTCTACGGCGCGGAGGTCGGCCACCACGGCGGTCAACTTCTCCGCGTCGGCGACGGTGCTGGGGGCTTGCTCCAGGAGCTTGATCGCCTCGCGCAGCCGGGTGCGGGCACCGCTCACGTCGTCGTGGATCGAGCGGTCCAGGTTGGTGATCAGCGGTCGGTAGCTGGTGCTCATGCCCGCACGGTGGCATGTCGCCGCGGTGGGGTGATGTGCGCGGCGCGGGTACGGAGGCGCACTGCGCTGTATCGTAGGAGGCAGTGAGT
# Right flank :  CGCGCACCGAAGTCGTGCCGCATCCAACGGGCCGGCACCGAGGTGCAGTAGGAACCGTTGCCCTCCAGACGGTTCCGGAAAAGTTGGAACAACATTTCTGATTCTGTCCCACCGTCCCGCTGACCAGCAGGCTCTCGATTATCGAGACAGATTCGGCGTCTGATCAGGCACGATGCGGCGCCTTCGTTGCGGACCACTGTCCAATGTGACTGCTACAACTGGAGCCAGCTTCCCCAAGCTGCCCAGCCAACCGGAGGAGAGACGATGACCACCACCACCACCACCCGTATCCGCATCGGAACGCCTGCCGTCGCCGAGCGACTCGGCGTGTCGGACGAGACCATCCGTCAGGAGATCAAGCGCGGCAACCTGCCCGCGATCCGCGTCGGCCGCACCTACCGCGTGCTTGAGAGCGACGTCGACGAGTACATCGCCGCCGCGGAGGCGGAGGCGTACAGCGCGCGAAAGCGCAAGGTGGGCGTGGAGGTCACTTCAGGCGA

# Questionable array : NO	 Score: 6.08
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATGCTCCCCGCGCAAGCGGGGATGAACC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGCTCCCCGCGCAAGCGGGGATGATCC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-10.50,-8.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//