Array 1 510742-513391 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWH01000002.1 Klebsiella pneumoniae strain CR20 N2_607374nt_124.702891, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 510742 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 510803 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 510864 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 510925 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 510987 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 511048 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 511109 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 511170 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 511231 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 511292 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 511353 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 511414 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 511475 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 511536 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 511597 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 511658 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 511719 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 511780 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 511841 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 511902 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 511963 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 512024 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 512085 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 512146 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 512207 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 512268 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 512329 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 512390 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 512451 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 512512 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 512573 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 512634 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 512695 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 512756 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 512817 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 512878 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 512939 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 513000 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 513061 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 513122 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 513183 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 513244 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 513305 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 513363 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5906-6904 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWH01000039.1 Klebsiella pneumoniae strain CR20 N39_12020nt_147.010634, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5906 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 5967 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 6028 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 6089 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 6150 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6211 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 6272 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 6333 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [6387] 6387 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 6448 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 6509 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [6514] 6571 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [6576] 6634 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6695 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 6755 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 6816 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 6877 28 79.3 0 ........T.A.CA........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //