Array 1 69-1269 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACA01000263.1 Kamptonema sp. PCC 6506, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 69 36 100.0 35 .................................... GTAAAGAGATTCCCTCATTTCGGCAAAAGGGAATT 140 36 100.0 38 .................................... GCATAGAAGCGATGGGCAATGCCTTACAAATGGTGTTA 214 36 100.0 36 .................................... TCGCTAACAACTGCTTTGACACACCTTGTCACTCTA 286 36 100.0 37 .................................... CAGACACTCCATAAGATAATTCGCCCCGAAGACGAAT 359 36 100.0 35 .................................... ATGAATTGCCTAAATGGTATAACTTCGATGCTGAC 430 36 100.0 36 .................................... AGTTAAATTATTAATGCCGGATTTTGAGACAAAACC 502 36 100.0 35 .................................... GAACACCTACGGAAGGATTTGAATTTGAGCTAGAG 573 36 100.0 37 .................................... GTAAAACCAGCGAAAAAGGCGGAGGAAAAGCCTCCCA 646 36 100.0 39 .................................... TATTTTTCACCCGTTCTTTCTTAGGCCGGCTGCCTGGGC 721 36 100.0 38 .................................... TTGGCTTGTTTGTTACCTCCTGTTGTTTTAATTTTCTG 795 36 100.0 38 .................................... ATATGTTTAGCGCGTGGCCGGCTAACGCAATGGGTTTA 869 36 100.0 34 .................................... TACACCTCCTTTGTGTGGTTATGGTTGGTCAATG 939 36 100.0 41 .................................... CTAGACCCGATCATTTATTATTGGATGGCAGAGTGTTTAGA 1016 36 100.0 38 .................................... TCCCACCCATTCTATCAAGTCAGCATCCCTAAGTTTCC 1090 36 100.0 37 .................................... AGGATAAAGGTGCGCGATCGCTAGGCAAATTCAAATC 1163 36 100.0 35 .................................... TAAAGAAGCGGCGGCTAGCTAGAATCACGAATAGC 1234 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 17 36 100.0 37 GTGATTAAACCTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : GCTATTGAGTGGAGGTGCTTGTAAAATGGGCGAGAGGTGGTTGTCCTGTAAAGGTTTCAGCCGCCGCTG # Right flank : CGAAGGGAATTATCCGAATGAGTTTGATGTTCCTTGATGCCAATAGGTGTTATCTTACATCCAATCCGGGGGTTGTTCGTACTAGAAGTCAAAGACTAAAAACTAGATACTATCGGCCATGTAACCAAATCTGACTGGACGAGCTTTGAGAGCGATCGCGACCAAGAAAAGTTCTATATTAGTCTATATTTTGGGGAACCATCATCAGCACTAATTTACCCATGACATCCACCACAACGATCGCCACCCCCCTAAGCTGGACAGAATTAGAAGCCCTCACAGACTTTCAAATCGATCGCATCAACGGGCCAACTAACGCTCAATCCCGCCTGCGCCTGTTCGGACAAACCGAAGCCGATGTCCGAGTCACCCTCTACCGCGACAACCACGCCTGGTGTCCCTATTGCCAAAAAATCTGGTTGTGGTTGGAAGAAAAACAAATTCCCTATCGTATTGACAAAGTTACCATGTTCTGCTATGGGGAAAAAGAAAGTTGGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATTAAACCTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 12114-11352 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACA01000266.1 Kamptonema sp. PCC 6506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 12113 35 100.0 39 ................................... AAGAAACTGCTTTCCACCCCTGCTCAGTGGGAAAGAAAT 12039 35 100.0 38 ................................... TGGAGTGAAAATCGGAGGAGTAGGAGCAGCGCCACCAG 11966 35 100.0 38 ................................... TTTCAACTACACCATCCTCCCCATCGGGTCCCGTCATG 11893 35 100.0 37 ................................... AAATGAGAGCTAAATGTCTTAAAAAGATAATGGAAAA 11821 35 100.0 35 ................................... TCGTCTTCTTCACCTTCAAAAGAAAGAGTGCCGTC 11751 35 100.0 37 ................................... CTAATCAGGCATTAGAGAAATTCAAAAGCAAAAGCTA 11679 35 100.0 35 ................................... ATTAGCCGGGTTGATTGCGAGCTGCAACACCACGT 11609 35 100.0 39 ................................... ATCACTATATTAATAATGATAAGAGAAAAAGTTTTGCCA 11535 35 100.0 36 ................................... CAGTCGTTGTTGTAGATGTAATGATAGCGCCGTATT 11464 34 85.7 41 ...G....-..CG....A................. AAACCTGTATCATCTCTACTCATCTGTTCTTTCATTTGAGT G,C [11448,11461] 11387 34 80.0 0 ...G....-..CG....A........C.T...... | G,C [11371,11384] ========== ====== ====== ====== =================================== ========================================= ================== 11 35 96.9 38 GTTTGACCCTTACTAAAGGGAAAAGGTGCTGAAAC # Left flank : GTGAATTCTAAGATTTTTGTACTAGAGGATTTTACACCGCCAGATGAGCGGGGTGGTGTCTATCTTCAACCTTATGCCCTAAAGAAGTACCTGAAGCATTGGGAGGAAAAATTACTTTCTGAGGTGACTCATCCCCATACAGGGTATCAAGTCAGTTTGAGACGGTGTATGGAACTACAGGTGCGAGAGTATATTGCTTGTTTGATGGGGGAAGTTGAAGTGTACCGCCCTATGCTGTGGAAGCTCTAGTGTTTGCTAACTGTTCATTGATTTGTTTAGTTTATCAATGAACTGCCACTGATAAGCATCTGAGGGGGTCTGCTAGGGTTTGAAATCCTTATTCTTTCGTTGACCCTCTCGGATAAAGCTCTGGAAGAGGTTTTCAAGCTTGTGTTTGGCAGACTTATTGAGAAGTAGACTCATTTATTGCAGAAGAAACTTGACCCCTTCAGATCAATGGGTGTATGATGCTCTCATACTCAGGCTTCTACAAGCTGATG # Right flank : GGTAGGCATCAGAATGTTGCGAAGCTAAAAGTTATACTCCCCTGTTGCGACCTTTTCATTAAAGTTTAAGTCGTCACTTTTTAAAACGGAGAAGAAGATGGCAATGTTACCAACAGAACTACCCAATTGGTATAAGGTTCAAGGAATAGGCAATGAAGAGAAAGGCTGGGTGCCAAAAACTGAAGACATTGTTGAAGGCAGTCAACGGGAAAAGAAAGAAGTAACAGAAGCGTGGAAAGGGACAAATGACTTAAAAGCTTCCAATAGCTATACTCTTCGCATTGATGACTTGCAAGTTATTAGTCCCCTACAAATTGGTGGCGGCAGTTTCCCTGAAGGTCATATTTTACCAGCACGAATTGCTGGAATCCCCTGCATCCCAGGTTCAACGCTGCGGGGAGCTTTACTGAGCTGGATAGAAAAAATCTTAAAGGTATCGCCTGAGAATTTGTCGCCAGAGGAGAGAGAGGAGAGAAAGTTTTGGGAAAGCTTAATTGATG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACCCTTACTAAAGGGAAAAGGTGCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 46096-47322 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACA01000266.1 Kamptonema sp. PCC 6506, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 46096 37 100.0 42 ..................................... CCTGCTGTTGGATTTGCCCTCATTTTGAGGAAAATATCTAGC 46175 37 100.0 35 ..................................... GTTGCAGGGGGAGCATACCCACCTGAAGAATAAGT 46247 37 100.0 36 ..................................... ATGATATCCATCTTCTTTAGGAAAAGCCAAGGTAAC 46320 37 100.0 34 ..................................... TTGAGGCTGATTGGGGAAGAAAGGTTATCCCATT 46391 37 100.0 35 ..................................... TTGCGCGATGAATGGCATTTTATTAGGCAATCAAT 46463 37 100.0 42 ..................................... TCTAACTCCTCTTCCCCCATCCAATCTTGAGTAGGTGCGTAC 46542 37 100.0 32 ..................................... ATATCGACTTCTACTTGGTAAATTTCCTCTAC 46611 37 100.0 39 ..................................... AGGTCATGTAGCCATCACGACGCAAAATAAAGATTTTGC 46687 37 100.0 38 ..................................... TTAAAGACAGAAAAGAAAGATAAACCAAGACACAAACC 46762 37 100.0 38 ..................................... TCGTAGCGCTTACTTTACTGATAGCCAATCCAAGTTTC 46837 37 100.0 35 ..................................... AGCACCCTTGACGGGTTCCCCTTCTTCATTTAAAA 46909 37 100.0 41 ..................................... GGGAAAAAGAAACCCTGCCTGAAGCAATGCTGCGATCGCGC 46987 37 100.0 38 ..................................... CAGAAAGAAGCGTTTTTTGGGCTTCTTGTAAATCTTCT 47062 37 100.0 43 ..................................... TAACCCCCAACTAATAACTAACTGCCGAGTAACATTACTTTCA 47142 37 100.0 33 ..................................... CCGTATCCCGATAAAAATTAGTCCAGTCCGAGG 47212 37 100.0 37 ..................................... ATAGCTCTATTTGGAATAGAACCTTTCAGTAGTTATC 47286 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== =========================================== ================== 17 37 99.8 37 GTTACAATTAACCTAAATCCCTATCAGGGATTGAAAC # Left flank : ACAGCAAGCTAAGCCAGAGGCAGGTGCGATCGCGCCTGGGGATGATGTTGCACCTTTGCCTTAGTTTGGTTGATTGCTACAGCAACCGCTTTCAGCGGTTAGGGGCTAGGGGCTAGGGGCTAGGGGAAGAGAGGAAGAGGGGAAGAGAGTCAATAGTTTGGGCCATGAGCGAGTGTCCTAACCGTTGTGGCGGTTGCTACAATTGCTGATTGGTTGGCGATTGGTAATTAGCAATGCGATCGGACTTTTTTGCGGGAGAGGGTGGGTGTAAAAATCAGGGTTGGATTTTTTTCGGCTGGATGCCTTGATGGGTAAGGATTTGAGGGTTGTTGGCGTGAATTTTGATTCCCGCAAGTTTGGAAATGCTTGATGTTAAAGGGTTTGAGGGAAAATTTGTAATTTGCCTATTGACAAGCTGAGGTCTGGAATGGTACTTTTAGAAATGTCACGCGCAACTGTACCTTGAAAACTAAATATAGTAAGGGTTTCAACACCAAGCG # Right flank : CATACAACAGTAAAGTGGGCGCAAAAGCGCCCACCCTAAATTCAACTGAACTGCTTACCCACATCAAGATTGAAAAGCGTTTGCAAAGTCTGCATCGCTTGGCGGCGCACCTCAATATCTTGCTGTGCTCGCAACTGCACCATCGGATCGTGTAAAATCTTATTTACAATCCCCCTAGTCAAAGCCTCAATCACTTCTTGATGTTTTTCTGCAAACTCAGAACCCAAACGAGATAAAGCCTTTTCTAACTCTTGTTCGCGAATCGATTCAATCTTATCCCGCAAGCAGCTAATAGTTGGAACCGTCTCCAAACTCCGCCACCAGACATCAAACGCTGCTATTTCCTCTTCTAATAAACCCTCAGCTTCCTGAGCCATCTTGCGGCGAGTTTCATGATTTTGAGCTACAACAGCTTTCAGGTCATCTACATTAAAAGCTCTCACGTTCGGCAAGTCATTAACATCAGCATCAACATTACGCGGAACAGAAATATCCACCAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAACCTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 6903-6344 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACA01000259.1 Kamptonema sp. PCC 6506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 6902 36 100.0 37 .................................... TATTCTATGTTTGTTTCTCCATCACGTTCCCAATTAG 6829 36 100.0 39 .................................... CCTTTTATAAAGGTGGATTAGAAACCACCTCCTCAATGT 6754 36 100.0 40 .................................... GGGTTAATTCAGTGTACATACTTGAACTATTTTTATCTGA 6678 36 100.0 44 .................................... GAGCAGCAGCCTCTTGACCGTTAGTCATTGAAAACTAACTTAGA 6598 36 100.0 34 .................................... TTTTCAGAAAAATGTGTATGTCACAAGAAAGAGT 6528 36 100.0 36 .................................... CAGTAAGATGTCTGATAATAATCCATTTTTTTACCT 6456 36 100.0 41 .................................... CCTTGTCCCGCTGTGGCAGCGGAGTTGGGTCCATTTGAGGC 6379 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 8 36 100.0 39 CTTTCATTACTCATTTCCCCGCAAGGGGACGGAAAC # Left flank : CTCAGCATAAAGGTAGTCATTGCTGTGGGGGGCTAGTTCAATGACTAGCCCGACTAATTCTGTGTCCGCAGGCCAAGGGAGAGGTTGATGCTTTTTTTGGGTGGGTAGTTTTGGCATAGGGGCTAGGGGCTAGGGGCTACGATGCTCAGGAAGAAGGGATATAGAATCAACGGTTTCAGTAATTCCGATCGTAGGCCTTGACAAAGACCTTTTCCATCTGTATGCTGAGGTTAATTCACTTCAGGACTTTGAAAATTTTATAGTTTTGGTCAATCGCGTGGGGTTTGTTTCGTGACCCGTAGACAATAATCGACGCAATCCGAGAAATCGCTGAAAGCCTCATTCTTTCGTTGAGGTGTGTCGATTCCTTTCCCCGTAAGGGTTTGAGATGTTATCGCTCAGGGCTTATTGAAGATGACCCCCCTTTTATTGACAGGTAAAATTTATTGCGTCGATTTGCCGTCTGAAACTCTCTCTGGGTAAGGAGTTGTAGCGTAGCT # Right flank : GTTTAATGTTTTTTAGAAAGTAATAAAAATAACTATAACTTTCATTACTATCGCGATCGCTCCCTTACAATTAAGAGCGATCGCACCTTCGTCTATTCTGGAAAATCAGGAATCACCCATTTAGGTGGCTCCGATCGCTTCTTCCTTACCGCTTCCTCAGCCATCTCCAGCATTTTATCCAGAGAAGTGTTTTCTATGAAACTTGACGTTGCTGCCGCATATTCCCGCTTCGGGCATTTATCGCCCAAAATGCAGCCGTTGACGCACTCTACAGCACAATTTACTGTACTTTCTACCATATTCTCTTTCCTTCGATGCTGCCGACAATTCGCAGGCCGATGCTCTCAGAGCCTTAGCTGAGAAACTGCCCGGTATATGTATTTTACTTTACAAATTGCCCTAAATGCCGCTCGAGGGCCATAGCCAGAGCGATCGCGATCGCCGAGCTGTAATACAATCAAAACAACCCACCTTTTCTCTGCACTATGAGTAATCCTCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCATTACTCATTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 27628-28252 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACA01000359.1 Kamptonema sp. PCC 6506, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 27628 37 100.0 40 ..................................... GAAGCCTTGACCCCACTAGAAGCGCTTGAAAAAGTAAAGG 27705 37 100.0 33 ..................................... AAAAAGCTGAGAAAAGAACAAATTCGACGATTT 27775 37 100.0 37 ..................................... CTATTTTCTGCGGTACTTTTGCCTCAATTGGTGCAAT 27849 37 100.0 33 ..................................... AATTGATTGATAGTCAACGTTGAACTGGTGTTT 27919 37 100.0 36 ..................................... CATTTATCTATATCAGGAGCGCTAAGCTTATTTGTT 27992 37 100.0 40 ..................................... TGTTTCCGGACGCTGAGGCCCTTGGCAAGGCCACTATTAC 28069 37 100.0 36 ..................................... TATCAGCCATGATCTTTACCTCTAAACTTGGTTAAC 28142 37 100.0 37 ..................................... ATCAAAGTTCTTTATCATAATCACTTGCTTGCCGATG 28216 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 100.0 37 CTTTCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Left flank : TGGAATAACGCTAATGTTCCACAGGTATGGCGGGATGAATATCCACAACCGCCGGATTTTATAGAGTCTCGCCCTGCGACGGTTAAGCTGACTCGTTCGATTCCGCAGGAGAATAAGCAGTTGCTTAAGGAAAAGTTGGGTTTTAAGGGCTACAAAATTGGGGAGTTTGGGCCTCGGCAGACTCGTCGGGCGACGGCGGCTAATTGGCTGATGAGTTATATGGTGGATGGGCGCTGTTGAGGGATGGCTTTGCGGGAATCGGTAGGTGTTTTTTTTAGGGTGTAAATTTTTGGGGCTGAATCGCTTATGCTGCAAGGTTTTGAGGTGCGTGGGATGGTGAAGGTGATTCCCGCAAAGTCTGTAATATTTGCTGTGATTGGGTTTGAAGCTTTTTTTGTTTTTGCCTCTTGACAAGTCGGTGGCTGAAACGGTATATTGATGATCGGTTCACGAAACTGTACCTTGAAAACCAAATACAGCAAGGCTTCCAGAGGTCGGGC # Right flank : CTATGATTGATAGAATCCCTATCAATCACAGTTTAACGAAATGCACCTATTGCAAATTGCTCTACATCTCTGCTATTTTCTTTTTCACCCATTAATCGCTTTGTAGCGCGTATTTTCTTTAGCAGTAAGTAGTCGCGCTAAGAGTTTTTACCGCAATTGGTCGAGGGCCCTACAGGAGTCACCCTAAGAGTTTTCGCCGCAACTGATCGAGGGCTGTACAGGCGCTCAGATTCCGAATCCAGTTGCGATCGCGCAGAGTACCAAAGCGATATTTAAAAGCTTCTACTTCACCATTAGGCCGCGCTAAACCGATATAAACCAATCCCACTGGTTTATCCTCACTCCCTCCTCCAGGCCCAGCAATTCCTGTAATACTCAAACCATAAGTAGTTTCTAGGCGCGATCGCACTCCCGCAGCCATTTGTTTTGCCACTGTACGGCTTACCGCGCCAAATTTAGCTAAGTCTTCTGGATTAACATCCAATAGCCCTACTTTAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 12915-13987 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACA01000048.1 Kamptonema sp. PCC 6506, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 12915 37 100.0 37 ..................................... CTAGTAGGTGAAGAAGGCAAGCTAGAGAATCTTTGCC 12989 37 100.0 33 ..................................... GCTGACGGTATTGGTTTTGGAACTTCTGGCTCT 13059 37 100.0 38 ..................................... CTTAAACACTAAGTATATGAATGATAGGAATGAAGAAT 13134 37 100.0 35 ..................................... AGAATTGTGTCCGCAAGAACACTTTCTTCCCTTAG 13206 37 100.0 38 ..................................... TCTTAAATGTCAGAAAGCTAATTAAAGGAGCTTCTAGA 13281 37 100.0 41 ..................................... ATTGCGGCAGTACATCGCTCGCAGTCAAGGCAACATGAACT 13359 37 100.0 33 ..................................... CGGGACGGAGTGATGCAAACTATCAACACATCT 13429 37 100.0 37 ..................................... ATTATTCCTAATGCTTGATGCACTGAAAGCAAAATAT 13503 37 100.0 42 ..................................... GAGGCTTCATTCTATGAGAGCCAGAGAATAAAAGTTTTTGAA 13582 37 100.0 40 ..................................... CTTAGACCCCGCGTAGATATAGTGCCTCGAAATGCGCCGC 13659 37 100.0 35 ..................................... AACTTAACAATCTCATCAACAGAATTGTACTTATT 13731 37 100.0 34 ..................................... ATTATCCTCTTCAGATTCCAGCAAATTTAGCTGC 13802 37 100.0 34 ..................................... CATAGGACATTGTTATTTGGGAGGGGAAAAAGCT 13873 37 100.0 41 ..................................... TCACTGATTTTCGCAGCCATGATCGCACCAATGTTTTCTGA 13951 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 100.0 38 GCCGCAATTAAACTAAATCCCTATTAGGGATTGAAAC # Left flank : GTTGGTAGGTTCGGGGATTCCTGAACCGATTTTGGGTTTGCAATGGTTGAAACTGTTGCCTTTGGCTGTGAATTTTGGGGCGGGAATATTGACGCTGGGGTAGAGTTGGAAATGCGATCGCGCCTTGCTAAAATCATCAAGCCGGAAGAGGATAGTATTCTGTTCATTCCTCTGTGTGCTTGCTGTCGGGGTAAGATTGAGCGCATTGGCGGGATTGCACCAGCGGACAGGAGTATATTTTTTGCCTAGTTTGCGGGAATCGGTAGGTGTAATTTTTGGGGTATCAAATTTTTCGGCTGTAACGCAACTGGGATAAGGGTTTGATGCCCCTGACTTTTAAAAACGATTCCCGCAATGGCTGGAACCTTTACAGGATAAGGATTTACGGAAAAGTTTTGCGGATGGTATTGACAAGTCGATGGCTGGAATGATACTTTTAGATCAGGTTCCCGAAACTGCACCTTGAAAACTAAATATAGTAAGGGTTTCATAAACCGACG # Right flank : CTAACAACCACAGATGTATAATTTAATCTATATTGCAGCAATGGGAATAAACTACCCGCTCGATACCGATATCCTACTGTAGTGGCTTTTTGATAATAAAAAAATAATTATCATCATCAAGAATTTTTTACTATCAAATATCAATATCAGGACTTACGCACCCAACCAAAGAAACCGGGTTTTTTTACAAAAATACTTCGTTATTACCCACATACAATCTCAAAAACCCGGTTTCTGGGGCCATCAGCGCAAGTCCTAAATATTACAAACCTCCCCAATCTGATAAAATCCATAACAGCCATCCCCCACCCACAGCCAAATCAATGACCGACAAACGCTTCATCAGAATCAATCCCGAAATCTATCAACATCCCTTCGACCGTAAGGCCCTAGCATCCCTCGAAAAAATGCCAGGACTATCATTTTTGATGAAAAAAGTCAACGAATATGGCATAGAACGCATCCTCAGAATGCAAACCTTGGGTAGTGAATTTAAAGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATTAAACTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 8846-7480 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACA01000373.1 Kamptonema sp. PCC 6506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 8845 37 100.0 35 ..................................... CACCATCCCTATCATCAAGACTGTACCATTTGCTT 8773 37 97.3 32 T.................................... CGAAGCTTAAGAAACCTATCCCAAGATTTAGA 8704 37 100.0 35 ..................................... GTGATAATATTCAAGGTTCATTCTCAAGAGTATTA 8632 37 97.3 37 C.................................... GTTCCCTTGCCTGATGTACCTAATTTAACTGGCATCA 8558 37 100.0 34 ..................................... TTCTAACCTATAAACACAATAACTAAATAAACTA 8487 37 100.0 38 ..................................... CGTGCTTTTCCTTGATAATAAAGAAATTTTCTACTTGC 8412 37 100.0 34 ..................................... CAACTGCTGCAATATTTAGAGATTTCTGCTGAGG 8341 37 100.0 42 ..................................... TGAATATTTCAGGCTTGAAAGAAGGTAATTATTATTGTTATT 8262 37 100.0 33 ..................................... TTGGTTGGACAAACTGGAGCTGTTACAGTTCAA 8192 37 100.0 42 ..................................... CTAAAATATGGCTATAACTGGAATTATTGGACATCAGGGTAA 8113 37 100.0 34 ..................................... AATAAGAAAGTTGAACCGTGCTTTCCGACTATAA 8042 37 100.0 39 ..................................... AACAACGGAATGGTATCAGTAACTGTAGTGACAACCTCC 7966 37 100.0 36 ..................................... TTTTCTGAAATCAATTGATAAACTATCAGAGAATCA 7893 37 100.0 34 ..................................... TCCACGTGGCTGTATTATCGATCACGGGAATTTT 7822 37 100.0 45 ..................................... CAAATAGAATACAAGTCCTTCCATAAAGCTAGACATTTGTTTTGC 7740 37 100.0 36 ..................................... AGGCACTACAGCAGGCATTTCAAAGACCAATGCAAA 7667 37 100.0 36 ..................................... ACCATCATCAGAAGGCAGCTTGAGAATGGGACAGTT 7594 37 100.0 41 ..................................... TCTACAATTGCTTTAGCGTAACCAGCAATGTCCGCTTTAGA 7516 37 91.9 0 ..................................TTT | ========== ====== ====== ====== ===================================== ============================================= ================== 19 37 99.3 37 GCCGCAATTAAACTAAATCCCTATTAGGGATTGAAAC # Left flank : CTGGTTCGCTGATTTTGTCGGGGGTGATGATGTTAGAATATCTCGGTTGGCAGGAGGCGGCTGAGTTGATTAAGAAGGGTTTGGCGGCGGCGATTTCTAATGGTGAAGTGACTTATGATTTGGCGCGAATGATGGAACCGCCTGTCCCTGAGTTGAAGTGTTCGGAGTTTGCGGATGCGATTATTAAGCATTTTGGTTAACTGTTAACTGTTAACTGTTAACGGTTGAGACAGGAGTATATTTTGTCTAGTTTGCGGGAATCGGTAGGTGTAAATTTTGGGGTGTCAAATTTTTCGGCTGTAATGCAACTGCTGTAAGGGTTTGATGCCCCTTACCTAAAAAAACGATTCCCGCAATGGCTGCAACCTTTACAGGGTATGGATTTGAGAAAAAGATCGCAGGAGGGTATTGACAAGTCGATGGCTGGAATGATACTTTTAGATCAGATTCCCGAAACCGCACCTTGAAAACTAAATATAGTAAGGCTTTCAGAAACCGGC # Right flank : TCAACTGCATAGGCAATCTCATTTTTTAGGGCTTACACAATTGTCACACTTGAATCTACTTGTAGGATGCGTCAGACACAGAAATCGATCGAAACCGTCAGGGTTGTAGTATCAGACGCACCCTACTAATTGTGCCAGTTGCCTAAGTTCTGTCATTATTTTGTTAATCAAACACCTAACAACAACCCCCACCACTATAATGCCAAGTTGAATCAGTAATTAACACTCGATCCTGGATTAACGCCCCTAACTTCCCAGCAGTTTTATCGCACACGGCCGCAGGAACTCCCCGCTGAAGTATATGACCTTCTCCATCATCAAAAAACTCTTCTAGCCCGTTATAAATTGCTGTTTTACCCGTAAAAACACAGGCCCCATCATCGGGAATTGATACCTTAAAAGATACAGAATCCAGACTTTCTAAAAGCAAATCTGCATCTAAATTATAACTCACCCGATCCAATAACCGATAAGACCGCCGCGCCCTAATTTCCACTTGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATTAAACTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 59089-60757 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACA01000316.1 Kamptonema sp. PCC 6506, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 59089 37 100.0 40 ..................................... TCTCCAAAATGTGCTAGGGATATTCACATCACCAGTAAGC 59166 37 100.0 41 ..................................... CACAAATTAGCCGCAAAAGGTGCAGATGCAGCTCCCTCAAA 59244 37 100.0 35 ..................................... GATCGCTATCGGATCGCGAAAAAGCCCCCAGTACG 59316 37 100.0 41 ..................................... GATAGTCCAGCCACCACTTTTCAGCAAAGAAATACCCGGCT 59394 37 100.0 39 ..................................... GTTTCCAAAATCCATAAATCCAGGATCGGATCGTCTTAC 59470 37 100.0 34 ..................................... GAGCATCATCGATGGTGTAGTTAATTAAGGAGAA 59541 37 100.0 35 ..................................... GTCCTTCGTGGGCAACAGAAGCGGAAGCATAAATC 59613 37 100.0 40 ..................................... AATCAATTGGTTTGCTAGAATTAAAGAGTCGATTTAGCGC 59690 37 100.0 38 ..................................... TATAATGGCTAGAATCCTAAATACTATTGAAAGCCTTC 59765 37 100.0 32 ..................................... CAGAACTTACAGCAGCAAATTCAGAATTTACA 59834 37 100.0 35 ..................................... GAAGAGTTACGTAAAAGTAAAGAGGAAATTGCACT 59906 37 100.0 36 ..................................... TTGCTTGTCATGCCCTGACCCAACACGGCCGCGAGA 59979 37 100.0 42 ..................................... CTTAGCTGCTTGGTATACCGCCTTGGTGTCGCAGCCGCACCG 60058 37 100.0 34 ..................................... CCGCCATCTTCCTTTGTGGCGGCGTAGCCGAAGC 60129 37 100.0 41 ..................................... TTTGGACGCTTCCGCACTTTCTTGTAGCGACCGCGCTCACG 60207 37 100.0 38 ..................................... ATTTCCGGTGGTAAATGCGATCGCTCACAACTAGCGAG 60282 37 100.0 38 ..................................... AGTAAATTCGCCTACCAGACATACTAATAACAACACCC 60357 37 100.0 33 ..................................... CTTTCTTACTTAGGCTTCGATAGGCTCAGTGAA 60427 37 100.0 38 ..................................... CAGCATATTTTCTCAAATCAGAAGATTCGGAAGCTCGA 60502 37 100.0 35 ..................................... CTGCTTAAGAAAATCAGCAAAAATTCCACCAACAC 60574 37 100.0 36 ..................................... ATGCTAATTCCTAAAATCTGAGCCGATACCAACAGA 60647 37 100.0 37 ..................................... ACTTAAGCGGGTTGAAGGTTCCCAAATTATTCAACCA 60721 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 23 37 100.0 37 GCCGCAATTAAACCAAATCCCTATTAGGGATTGAAAC # Left flank : ATCGCTCTTTGTGTGGCTGATGCTGAGTATGTTGAGGTGAATCTGTGCGGTACTTGGCTGTCGGTGAATGCTGAGGGCGCTGATGGCATATTTATGACTGTTTTGAGCGATCGCGCCGAGTTTTTGCTGCTGAAACTTTGGCACGAAGCCGAAGCTGGTGCTTCTGTGGTTAAGGAAGTTGGCGATTAATATCGTATGCGGGCGGCTGGTTAGTCGCCCTTTTACTGTTATGGGTGCTGATTGGGGGTTTTTGCGGGAATCGGTAGGTGTAAAATTTGGGGTGTAAATTTTTTCGGCTGTATGGTTTGATGGGTAAGGGTTTGAGGGCGATCGCTTGAAAAATCGATTCCCGCAATGTCTGAAATCCTTGCAGGGATTGGATTTGAAGGGAATTTTATTTTTGCCTCTTGACAAGTTGAAGTCTGGAATGGTACTTTAAGTTTAGTTTCCCGCAACTGCACCTTGAAAATTAAATACAGTAAGGGTTTCAAAACCAGGCG # Right flank : CCAAACTGCAATTGAAATTAGGACTACGCAAAGAAACAAGAAACCGGGTTTCTGTGAAAAATCCTTAGTTTCTCAACCAGAGATTTACGAAGAAACCCGGTTTCTAGCCTCAGCGTGCTTAATTACCAATTACCAATTACCAATTACCAATTAGTGCAAATCTCGATCCCAAACACCGATATAAATGCGATCGCTATCGTTGCGAGCAATCTCACCTTTAAGACCATCTTTGCTAAAATCAAAGCGATCCGTTCTCCGCTGCTCTACCGACCTAAAACCCTCCATAATTTCATTATTTGCCCCACCTAACATCCCATTTAAAGTAGTTCGCATCACCAAATCATCCACAGATTGAGCAAAAGATACCTCAGTTTGGCGCAATTTCCCAGAATCGCGATCGTAAATATAGCCTAAAGTAATTTGATTCGGCAGCAATTCATAAGTTGCCGTGCGAGTATTTGGCCAAAAACCTCTATTTTTAATCTTAGTTGGTTGTCCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATTAAACCAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //