Array 1 216493-216826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINAI010000033.1 Escherichia ruysiae strain C14-1 c_000000000033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 216493 29 100.0 32 ............................. ATAATAAAGATGGAATAAAAGGATAATTTTAA 216554 29 100.0 32 ............................. TTATTTATGAAGTCCTTTTCATGCGGCAGGGG 216615 29 100.0 32 ............................. AACCGTGCCGAGGTTGTACCATTTTTGATGGC 216676 29 100.0 32 ............................. GCGGAACTGCGTATCCACACCCTGACTGAGCG 216737 29 96.6 32 ........T.................... GGGTCGAGCACAATCGCGCCGGGATGTGTGAA 216798 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : TGGATGAATTGTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCCCTTCAGCCGATTAGTCAGAAAGAAGATGCCACGCGTTTATGTATCGATACCTGCATTGCGCGGAACTGGCGTTTGTCGATGCAAACGCATAAATATTTGAATATTGCCTGACTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAAGAATTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTGCCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTGAAGTTTGGCAGATTTTAGTTTTTATAGATTTATTTTAAATATTTACCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAGTAGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GTATCACCCGTCCTCTATTTCCCATATTATTTTTCGTTCCCTGTATCAGCAATAAATAACATATCTAGGTAGTTCAAAATAACTCTCTACCCCCGAGGATTTCACACTTATCAACACAAAAAACTCAATTTTAATTAAAGTGGCATTTGTATAATTACTTAAACCATTAAAACCTTCTACTATCTTGTTTCATTTTCAGCAATATATCTGGCTATTAATTAGTTTTTCAGAATAAAAGTAAAGAAGAGTTTGATTTTTGAACTTATTGTTCATTGATTAAGTAATGAATCAGTATAATTTGCGGTTGTTTTTTGAGGTTAATTAGTGATTTTGCATAACCCATTTTATGCACTATTGATGAATAGTTCTTATGGATAAAGATATCCAGTTCATACTTTAAGTGAGAATTGATAAAGTACGATTCGCGTTGTTCTTTATTCTAAGGATATCGATTGCAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 242463-243100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINAI010000033.1 Escherichia ruysiae strain C14-1 c_000000000033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242463 29 96.6 32 ...........................T. CAGATTAGGTTCCAGTGATACACGGCAAGGTA 242524 29 96.6 32 ...........................T. AGCCTGAAATAAATCCTGATTTTTAAAGAACA 242585 29 100.0 32 ............................. CTGCGTCTTCAGGAAGAAACCTACATTGAACA 242646 29 100.0 32 ............................. GGGTAGGGCGCTATCAGACGTTTACGCACATT 242707 29 100.0 32 ............................. TTCAGAGGAATCCTTGTCAGGGAGTTAAACAG 242768 29 100.0 32 ............................. GCCCGCCTGAATTAACGATAACAGAATCACAA 242829 29 100.0 32 ............................. GCAGCGCCATCGCTGCAGACTAAATACCAGCA 242890 29 100.0 32 ............................. AACCGCGATGCAGCGATTCACCGACCGGGCGG 242951 29 93.1 32 .......A....T................ AACCGCGATGCAGCGATTCACCGACCGGGCGG 243012 29 93.1 32 .......A....T................ GATAAACGCGATGCGGCGCAGCAAAAAATCAA 243073 28 82.8 0 ........T...T.........-.C...C | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTTGAAGTGCGTGCTGGCGTTTATGTCGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGA # Right flank : CAGCTTCTATTTTCAAACTCCTCAAGACGCCTTCGCCAGCTCTTTCACTAGCGGTAGCATTATCCGCATTACATCACGGCAGCGGCGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACATCATGCCAGCTAGTTCCCTCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCTTTATTTCCCAGATTCCAGTTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACCTCGGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCGTGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCACGCGTCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //