Array 1 26227-25417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJU01000028.1 Gallibacterium salpingitidis strain 18469/18 contig000025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26226 28 82.1 32 ..AC......AT.A.............. AATCACTGTTGGTGCGACGAATTACACACTTA 26166 28 100.0 32 ............................ ACTTTCGCCTAATATCAATGTAGCAATACTCA 26106 28 100.0 33 ............................ CATTATTTTTCTTTCTTGGCTTTTTACTACTAG 26045 28 100.0 32 ............................ ATTTCTAAGCATAACAGGTTTACCTGATAGTG 25985 28 100.0 32 ............................ ACGAACGTACTAGGCGGACAGTACAATGAGAC 25925 28 100.0 32 ............................ CTAGCGTTCCCCCTTGGTTAGAGTCCGAATAA 25865 28 100.0 32 ............................ ATGTAGATCTTGATGTAGCTTTCTCGGTACTC 25805 28 100.0 32 ............................ GATTACACCTAGTCACTACGAAACTGGTAATG 25745 28 100.0 33 ............................ AAGTTATCCGCCCAATTAAAGACTTGATCCGCA 25684 28 100.0 32 ............................ TGGTAACTTTTCCCCACCGGCATAAACCCATT 25624 28 100.0 32 ............................ TCATTAAAACATCCTAAATGTTTAATGGCGAA 25564 28 100.0 32 ............................ ATAATGAATACCATGCAAATCAATAGATGTTT 25504 28 100.0 32 ............................ TCCATGATGTGAGCAGGTACCTCTTCCTGTGC 25444 28 92.9 0 ..........................CC | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.2 32 CTTTACTGCCGCATAGGCAGCTTAGAAA # Left flank : GTCTGCAATATTCACACAAACCATATTTTTGACGGCATTTTGCATATCACGCAACAAAAGACTAAAGCAAAAGTCAGAATAAAATTAGTTGGCCAGCTCGCAGACATTATAACAAGGCGCATGGAAACTCACCCAGGCTATCTATTTCTACATTCTAGAGGGGGTAAATTAAGGAGAACAACGCTTAGTGAAAGATTTCGCAATCTTCGTAATGTAGCTTTGGAAAAATACCCTGAGTTGGCAGACGAAATTGCCGAGTTTCAATTTCGAGATTTACGTGCAAAGGCGGGTACTGATACTGCTCTTGCTTTCACAGATGAATCTGCACAAAAACAACTCGGTCATAAGTCTGTACGTATGACACAACGTTACATCCGTAAGACTCGTGTAGTCAATCCAACTAAATAGAGTTTCGGAAAAATGCACTTTTTTTCGGAACTCTCACTTTTCTAAAAACAGATATTTTCTTTTAAATTCAATATTTTATCTTACATCAAAGA # Right flank : AAAATCTCTTTTAAACGTAATTTAAACGTGATTTAAAGCTACTTTAAATTGAGATTATTATTCTCTTTATCTGTATGTACCTCGCCGAAAAAAACCACTATTGCTCTTCCTGTCGCCAAAAGCCTAAAAACTCATTAAATTGCCAAACTGCTTCTGTTTGCTCATCTTTTCTTAATGAAACGGTTGCATAAGATAACGCTGTTTGTTCAATATCTTTTAACTTTAATGCTTCTGTTAGCTCATCCAATGCTGTTGTTAAGGAAAAAACAAGCCATGGCTTAATCAGTGAATTTTGATTTTTAATCGGTTGATACTGAAACCTATGCCACTCTTTATTACAAGAGAATAAATTCTGATGTGCTTTTTCACTATACGCAAAGGCATAACCCCACGAACTTTCATCATCAGGTAAACAGACAAAATCTTCCATTTTTTGTGAGGCCCGAAACGGCGTAGTCAACGTATAGTGTGCAGCTAATTTAGCATTATCACTACGCCAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6331-6101 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJU01000035.1 Gallibacterium salpingitidis strain 18469/18 contig000030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 6330 32 96.9 34 C............................... ATCTTTTAAGCCGAAATCGACAACCTGCTCAAAT 6264 32 100.0 34 ................................ ATTATTGGCGGTCGAGTTAAGTTTTTAAGCCCGG 6198 32 96.9 34 A............................... TCCAAAAGATTTTGCGGAACCATTTATTTGTTGA 6132 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 4 32 98.5 34 GCAGCTACGTTCGCGTAGCTGTGAGTTGAAAC # Left flank : TTATGCATATTCCTGAATTAATTCGTATGGGCGCAAAAGCTGAGATAGAAGGAAATACTGCGATTTGTCATGGTGTGGATCATCTGTCTGGTGCGGAAGTGATGGCGACGGATCTTAGGGCTTCTGCAAGTTTAGTGATCGCTGGTTGCATTGCACAAGGTGAAACTATTGTCGATCGGATTTATCATATTGATCGTGGTTATGAGCATATCGAGGAAAAACTTCGTGGCTTGGGCGCTCGTATTGAACGTTTCTCTGATAGTGAAATAGAGTAAATTACGCATCATTATCTCTGTTTTCCTACTATAATTAAATCGCTAACCATTGGTTCTCATTGCATTCTAGGTGGTTAGCGAAATTTATTTTTCTTTAAAAATCAGATAGTTAATTCTAAGATATAGTATAAAGTGCTACTATATAAATAATTAATGTCCTTATATAAGAATATTAGCGAATTAGTGTGTCTAACCTATTGTTTTATATATATTTTTTATATTGGG # Right flank : CCATTCTAACTCCGACATCCCAAGTATTAGGTTGTCAGCTACGTTCGCGTAGCCGGATACTTATATCTAAGAATTAGCAGTCTGATATTTAATATCTATAGAACTTAATTTATCGATGATAGACAGTAATTGCTCTGTTTTTTCGTCTGTGGTAGCCCAGCTTGTCGCAAATCTGATCATCGTATGATGTTCATCAATTTTTTCCATAAAGCCATATTCAGCATACTGTCGCAGAGCTGCAATAAAATCATCGCCGAAATTCCTTTTGAACCAAGGCAATATGTTTCTTTAGGTATTGCAGTTCCTTCAATGGAGATGGCTTCACCAGCAACCAAAAAATTTATAGATTGCATTAAAATGGTGACTAATTCGATTAAGAATGGTGTTTGATAGGGATTATAGCCATAAAAAAATCTGCACCTTAACTCAGAATATTTATTAAGGTGCAGATTTAAATAAGTTAAGAATTAGTTCTTTTGTTGTTTTTGGTAAGCATAGGC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACGTTCGCGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.10,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 68349-68081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJU01000033.1 Gallibacterium salpingitidis strain 18469/18 contig000028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 68348 29 100.0 31 ............................. ACCAAATTTGATGTTCTTTCCGCTTCTTAAA 68288 29 100.0 31 ............................. TGTTATCTGGCATTTTGAGTAAGGCTTTAAA 68228 29 100.0 31 ............................. ATTTGGCGACTTTTTAAAATATTGCGAATCC 68168 29 100.0 31 ............................. TCATGGGAACGCTACATTCACCCATGTGAAG 68108 28 93.1 0 ........................-...G | ========== ====== ====== ====== ============================= =============================== ================== 5 29 98.6 31 GTTTACCGTCGCATAGATGGCTTAGAAAA # Left flank : AATTCAAGCTCTTTTTTAGTCCAAAAAAATAACTTATTGATTTAACAATATTTTTTATTATCTTAGCAAAAATAGGGTGAATGGCTAAATTTTTATGTCATAGCTTGCTATTTCAGGAATGACGATATATTTTAATGA # Right flank : CAACAATCCGCATTAAATATGCGGATTGTTGTTTAATCACTATGCTCGTTTCACACCTAAAATAATATGTGAAGCTTTAATGATTACATTTACCGCTGAACCAACCGTTAAACCTAATGCGTCAGTACTAGTATTAGTAATAATCGCAACGATTTCATTGCCACCAGCAGTTTTTACAATAACTTCTGAATTCACTGCACCACGAGCTACTGCAATTACATTACCGTTAAGTTGGTTACGTGCAGACAATACTAATGATGTGTCTGTTGATAAAATCACTGATGATGCCTTAAAAATAGCAACAACCTCGGCGCCCTCTGTTAACTGTAAATTCTTCGTACTTTCAGAAGTAATTACACTAGTTAATTTTTCGCCACTTGCCAATAACAACTCAATTGCATCATTTACTGCACCTTGCTTAATGGATTTTACAGTTGCTTTTAACTGATTTCTTGCACTTATTGTCATTTGTTATTCCTCTATACAGAATGAACTTTATT # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGTCGCATAGATGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //