Array 1 43032-43243 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSGK010000013.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
43032 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG
43093 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA
43154 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC
43215 29 96.6 0 ............................A |
========== ====== ====== ====== ============================= ================================ ==================
4 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA
# Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT
# Questionable array : NO Score: 5.82
# Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.24,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 68946-70378 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSGK010000013.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
68946 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT
69007 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA
69068 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA
69129 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA
69190 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT
69251 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG
69312 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA
69373 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC
69435 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA
69496 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC
69557 29 96.6 32 ..................A.......... GAATACCGATTCATAACGGCGGAAATGTGGAT
69618 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG
69679 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG
69740 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC
69801 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT
69862 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA
69923 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA
69984 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA
70045 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC
70106 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC
70167 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG
70228 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT
70289 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT
70350 29 100.0 0 ............................. |
========== ====== ====== ====== ============================= ================================= ==================
24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT
# Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.51,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//