Array 1 543010-545109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHTJQ010000001.1 Klebsiella pneumoniae strain KP0018 NODE_1_length_738785_cov_50.0198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 543010 29 100.0 32 ............................. TTCTTCCAGAGTTGATTTGGCATCACACAAAC 543071 29 100.0 32 ............................. GACCGTGCCAGTGGTACCGCCCAGAAGTAGCA 543132 29 100.0 32 ............................. GGTCCAAGTACCCCGACGGGACGCCGGTAGCA 543193 29 100.0 32 ............................. TTGCTGTATGCGGCGGCGTGATGACCAAAAAT 543254 29 100.0 32 ............................. TGGATGAAAACTTTAATTTATCAGCGACAGGT 543315 29 100.0 32 ............................. TTCACTATGCGTGATGGTCGTGTTTTTATCCC 543376 29 100.0 32 ............................. TCCAGCGTTTCCGGATTCTCGCGGCCCGTGTT 543437 29 100.0 32 ............................. CAAAAATGAAATAAATCCGGTTTAGGGGGTTG 543498 29 100.0 32 ............................. TTTCCACGGTCTCATCTTGTACCGCGTCGATA 543559 29 100.0 32 ............................. TTCTCCGCGTGCGGCCTGATCGCGGGCTTTAC 543620 29 100.0 32 ............................. CCCACAGCACGCTATAACACCCCCGCCACTAT 543681 29 100.0 32 ............................. TGACTGCCAAACGTATGGCGTAAAACATGCGT 543742 29 100.0 32 ............................. TTAGTAGTCCCGGTTATCATTTGTCGGCCCCT 543803 29 100.0 32 ............................. AGTGATGGATAATTCTGTCTCGTTCGGCTTCG 543864 29 100.0 32 ............................. GTGACGAATTTCGTTAACCTGCCGGCCAGCGT 543925 29 100.0 32 ............................. AAAGATTTAAGTAGCGCCGGTAAAACCGGATT 543986 29 100.0 32 ............................. CTCATCACCACGATATTGCGCCCGGTCACGAA 544047 29 100.0 32 ............................. TCGCAGCCGACCAGTACCCATTCCGGATCATC 544108 29 100.0 32 ............................. GAGCGTCCGGATGTGCGTTACCGCCGTATCAA 544169 29 100.0 32 ............................. TGAGAACGGCGAGTGGGAAACGTTCATGCTGC 544230 29 100.0 32 ............................. CATGCCGCGGGGTGGCTGCTGAATACGTTCGA 544291 29 100.0 32 ............................. GTCAGGGGATTACCATCCCTGACTTTGTACTC 544352 29 100.0 32 ............................. TGGATTGACGATCGGGCGCAGGAAATTATCGA 544413 29 100.0 32 ............................. CCTTCAGCGCCACATTCTCCGCCGCCAGCTGC 544474 29 100.0 32 ............................. GCGTGCAAAATCAACGTCGCGGCTGTGGTTTC 544535 29 100.0 32 ............................. GTCTGGATATTTGGGGGCGTATCGTTAATGTT 544596 29 100.0 32 ............................. TCTTAACGATATTGCGGAGGGAACCGGAATTG 544657 29 100.0 32 ............................. TTGAGCCCGCTATCTTCACCGATTGCGGCGTC 544718 29 100.0 32 ............................. CAGGCGGAACCGGTGATAGATTTCGCGGGTTA 544779 29 100.0 32 ............................. TCCTGCAGATCGGAGACGGCGACAACATCGAG 544840 29 100.0 32 ............................. TCCTGCAGATCGGAGACGGCGACAACATCGAG 544901 29 100.0 32 ............................. AGTACCGAGATGGCGATACACATCTTTTCTAT 544962 29 100.0 32 ............................. CTACCGCACAGCGGAATCATTCGGCTTGGTTC 545023 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 545081 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCACCGCCATTAAAAGCTGATCGAGAGTACCGACACCAACTTCAGCGAGTAGCGCTTTTTTGCGGGAATCAGCGAACCAGATGTGGCATTCACTGGCGGCGTTGCGATCGTCTTGCGCGTAATCTTCTGCCGTCTCATTGACTGGCTGCCAGATGGATTGCCGGAAAGTTTCTGACATTTCTCTTTCGCCATGAGCCAGTATAAGCGACGGCCTGGCATCATCGGCGAACAGGGCACGGTAAGCCGCCGACAAGCGTTTATACATAGCATTCGCGGTTGCCATGGTCGGCAGTCCAACGTAAAGTCCATGGCCTTTACCTGCAGACATTAAACGATGAGTCAGAATCAGTGCTGCTTCTGTTTTACCAGCTCCGGTTACGTCTTCCAGAATAATGAGTTGCGGGCCTGGCGATGAGATATCCAGAGTATTAGCTCGCTGCTGGAGCGGAGTGAGCGTATGGATAAAGGGAAACAGAGCTTGATGATTATGATAAAAGC # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGAGCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCTTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-249 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHTJQ010000050.1 Klebsiella pneumoniae strain KP0018 NODE_50_length_307_cov_0.836538, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================== ================== 2 32 100.0 24 ................................ TTTTACTCCTTGGCCTCCGATAAG Deletion [58] 58 32 100.0 50 ................................ ACTTTTACAACTCCTTGGCTCACAGAACGACATGGCTACGATCCGACTTA 140 32 100.0 47 ................................ ACTTTTATTGTCTTCCTAAGGAACGACATGGCTACGATCCGACTTAG 219 31 96.9 0 ............-................... | ========== ====== ====== ====== ================================ ================================================== ================== 4 32 99.2 41 TCGGAGGCCAAGCGGTCTTAGGAAGACAATAA # Left flank : AT # Right flank : ACTTTTACAACTCCTTGGCTCACAGAACGACATGGCTACGATCCGACTTAGTCGGAGG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.30, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGGAGGCCAAGCGGTCTTAGGAAGACAATAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //