Array 1 345890-344703 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZPO01000005.1 Hyphomicrobium sulfonivorans strain S1 NODE_4_length_442000_cov_26.3818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 345889 29 100.0 32 ............................. GTCGAAGGTCGCCAAGCGCTTCATTCTCAAGG 345828 29 100.0 32 ............................. GACGTTGCCGATGTACGTCGCGGCTACGAAGA 345767 29 100.0 32 ............................. TATTTTCACGCGACACCCCCGAGCAATTACCC 345706 29 100.0 32 ............................. TGTGCCGGGCCGGATTTCCGGGAACCACTCAC 345645 29 100.0 32 ............................. TGCTGCAGCGAAGGCTGCCGAAGCGACCAAAA 345584 29 100.0 32 ............................. AGATCCCCCGTTTATTCCCGCGGGGCCATGGG 345523 29 100.0 32 ............................. CGGGTCAAAACAACGTCGACGGCGCCCCGCCC 345462 29 100.0 32 ............................. TTGAGGAAGTCGCGGTTGATCGGCATCCAGTC 345401 29 100.0 32 ............................. TATTGGTTGCCGCGCGACGGCGGCGATTGGAC 345340 29 100.0 32 ............................. GGGGAGACGCTGGCGGCATGGCTGGCGAAATG 345279 29 100.0 32 ............................. AGACATAGCGACCGGGCCTACCATCAGCGTAC 345218 29 96.6 32 ............................T CTCGAACAGATGGCCACGATGCTGGGATACGA 345157 29 100.0 32 ............................. GGGGAGACGCTGGCGGCATGGCTGGCGAAATG 345096 29 100.0 32 ............................. GTACCGCTCAATCAGCCAGTCTTTGTTGCTAA 345035 29 100.0 31 ............................. GGTCCTTTCTTGTCGGGGACATGCCGGGCTC 344975 29 100.0 32 ............................. GCCAGCGTAAACACCTTCACGGCTTCGATGCC 344914 29 100.0 32 ............................. TCGTTGGCCATCGCGACTGCCTCGCTCGGCGT 344853 29 100.0 32 ............................. GATCCCCATACAGGACATCGTTGCCGGCGATG 344792 29 96.6 32 ............................T CTCGAACAGATGGCCACGATGCTGGGATACGA 344731 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GGCTCCTCCGCCCACGCGGAGATCGACCC # Left flank : TTTCAAGACTGATCGATAATATCAAATCACTCGTCGGACCGCCCGACCTCATGAACCGCAGTGCTGATGTGACGCCAGCAGAAAATTGCAGTCCAACGCCGAAGCCTGCGCCCGACCAACGCAGTCAAACCGGGGACGACTGAGCAATGCCTCTTTGCATCGTTGTCACACGAGATGTCGAAATGCGGTACCGGGGCTTCCTGGGTTCTGTCATGCTCGAAATTGCGCCCGGATTTTACATGGGGCCGCGCGTCACCAAGGGGGTTCGCGAGCGGATTTGGAGCGTTATGCAGGATTGGCACGGCCACCTTCAGCGCGGCAGCGTAACCATGGTTTGGCGTGAGAAAGGAGCTCCGGGCGGATTGCGAGTGCAAGCCCTGGGCGAGCCTCCCAAGGATCTCGTCGAGCACGAAGGTTCGCTTCTCGTTCGCAGAGCTCAACGCGGGCTTTGACCGGTGTTCTTTGACAAGTGAAGCAATATCAGTCTCTTACCAAGGAGA # Right flank : GCATGTCTAGCCACGTCCGCAGCGTGTTGCTGGGCTCCTACACCAACGCATTATATCTTGTCGGCATCAGCGAAAACGCCGACGGCAACGCCTACGACGGCAAACTCGGCGTCAAGGTTGCGTGGTGAAATTCGCCATCCGATCCAATGTTCAGCGCGTTGCCAGTACGCCGTCAGACGCAGTACTGGCCAATAGGCCTATGGACTAAGATCAATGCCTGCCGAAAATACGAAACGTGCGTCGGTGTCGCTGCTACTGATATTGGTGTCCCAGTATCGGAAGTCGAAGAAAAGGCGTTCGACGTCGAGGCGCAAGCCAGCGTTCCAGTACACAATCGACTTGTGCGGATCGCCATCAACATCGACAAAATAGCCACCAACGTAATGGGCGTTTTCGGCCAGTCCCCACCGGCCAACCGTTGCACTAAGGGTCGGAGTAAAAACGCCGACATTCTTAAGTTTGTAGCTGACATCGCCTTGCAGCGTTAAACCCTCCGGCAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCTCCGCCCACGCGGAGATCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 285427-285029 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZPO01000004.1 Hyphomicrobium sulfonivorans strain S1 NODE_2_length_702361_cov_24.2744, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 285426 29 96.6 32 ............................T GTCTCGCCCGGATTAGACGCGCTCTTGATAGC 285365 29 100.0 32 ............................. GTCGCCAAGGCGATCAAGGACGGCAAGAAACG 285304 29 100.0 32 ............................. ATCAAGGCCTGGAGCGTCGACCTAGACGATCA 285243 29 93.1 32 ...........G................G ACGGTGGGCCGGACTGGAAGCCGGGTGATTAC G [285222] 285181 29 100.0 32 ............................. CACCACGGCCGAAATTCTCGGCGTCAACGAGA 285120 29 96.6 32 ............................G TTTTCGAGCGGCACCGGCCCGGAGTTTTGCCG 285059 29 86.2 0 ............T.............AAA | C,A [285033,285035] ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGTTCCCCGCACGCGCGGGGCTGAACCC # Left flank : CTAAAGCGGTGCCGGCCTCGGTTTCACGGTTTGGAAGGGCGTTGGGTGATTAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGGGTCGAAGGTTCGAGCCCTTCATCACCCACCATCATTTACTTGGTTTTCCTCACAAAACAGATCGGCACGGGGCAACGCCCCGGCAAAATTGAATAGGCCGGCGTGTCGGGATGACGCGCGGGCCTGAATTCGTATTGCTCGTCGCACGTTGGGCTTCCCGCTCCCGGAGCATCAATGCCGTGAATGCCGGATTCCATCCTGGAGGACAGCTGCGGTGTGTCAGAGCGAGCGCTTAGCGTAGCACCTGTTTTTGGGCAGGTTTGAACCTCCGGATAGCCCTGTGGATGTCACCGAAATTGCCCTTGAAGAGGCGGCTCGGTTCATTGCTGATGGACATCGGACAAACCGTGAACGCCGGTAGGTTCTTTGACATGCGAATATAACCTGCAATTTCAGACGCTTGTCTGGAAGA # Right flank : CTTGCCTGTTGAGCTGGTCAAAACACTAATATCGTTTTGCGATCTTTAGGTGAGTGCCTGATCAAAAACGCCAGCCTATCCATAGGCTGGCGTTCGTAGTTAATGGTGACATACTTTACCAGGTGAGCTGAGCGCCCGCACGGCCACCAACGGTCGTCTCGCTTCCACGTCGGCCGAAGCTCTGCTCCTCAAGACTTACGCCAACCGCTCCGGATACTGCCAGCCGCTCACCGCTGCCAAACAGATCGCGACCGACGACACCGACTGCACTGAAGCCTAGAGCAACGTTCTCGTTCCAGTAGGCGATGTTACCCGAGATGCCGAACGTCTCATTGGCTACAAGATCCGGGTTGACCATCGCCATAGCGATCGCCACACCGCCATTCAGCTCACTGAGTGCGCTGAATATGGCGCCGCCGTCAGAGGCCAGATGCCCATTGGCGTCGGTCGTGACAACTTCCAGCGGACCGTTCTGACGATTAACGCTCGTCGCCGAGGTG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGCGCGGGGCTGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 364671-363990 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZPO01000004.1 Hyphomicrobium sulfonivorans strain S1 NODE_2_length_702361_cov_24.2744, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 364670 31 96.8 36 ...........G................... TGAATGCCAGCGGTGTCGGTCGGACTAGCTATCGTT 364603 31 96.8 36 .................A............. ACGCCGCCGGATAGTCCCGTCAGCAGGTTGCGGGAT 364536 30 90.3 33 ............-.....C.T.......... TCTCTGCCGGCCAACGCGGGACGATGCTGCCGT 364473 31 100.0 34 ............................... GACGATGATCGCGTCAACGCGTGCATCGCCTGGA 364408 30 90.3 35 ........-.........C.T.......... ATGCGTGAGATCAACGCGCCGACAGCTGCCTGCGT 364343 31 93.5 34 ...........G.............T..... ACGTGTGAGACGGTCGATCTCGTCTGCTGCGTCT 364278 31 96.8 33 .........................G..... GATGCGCTGGCGGCGCGACAGGAACGCAACGCG 364214 31 87.1 33 .........CA.......C.T.......... GTTTTCTCACGGGCGCAGAACTCATGGGCTGGC 364150 31 90.3 34 ...........G...........G.T..... ACCCCTGTTATCTGCGCACCCGGCCACTGACTCA 364085 31 80.6 34 .G........G..A....C.T....G..... CGGCGTCTACGGCGAGCGCGTGGCCGTAAGCCCA 364020 31 90.3 0 ...........G......C.T.......... | ========== ====== ====== ====== =============================== ==================================== ================== 11 31 92.1 34 GTCGCGCCCTCACGGGCGTGCGGATCGAAAC # Left flank : AGCTGACCTCTCTTGCCCACGTTCGAGACCACCCGGCGCATGCCGTTCACGGCCGATCAGATGTTCGCTGTCGTCGCCGACGTGCAGCACTATCCGCTGTTCGTGCCGCTGTGCGAACGGCTGGAGATAACTGCGCGGCAGGACAACGGTGCCGAGCAGGTCATCACCGCGATCATGGCGGTGGGCTATCAAAAGATCAGCGAGAAGTTTACCAGCCGCGTGACGCTGCGCCCCGACGCGCGCGAGATCGATGTCGTCAAGATCGACGGCCCGTTTCAGCGTCTCACCAATCGCTGGCGGTTTCGCGATGTTCCGGGCGGCTGCGAAGTGCACTTCTTCATCGACTACGCGTTCGCATCCAAAATGCTGTCGCTGCTGATGGGGGCGGTGTTCGATAAGGCGGTGCGCAAATATACCGATGCGTTCGAGGCGCGGGCACGCACGCTTTATCCCGCCACGCCAAACACTATGATGGTGGCGAACACCGATGCCGAGGACGC # Right flank : ATCGCTGACATCGACGAGTCGATGAACCACTACTGTTCATGCCTCACGGGCATGTCGCGTGCGCCTGCGTGTCAGTCGCTGTCCTGCAACGCTTCGCTCAGCAACTCGACAGCCGTGCGCACACTGGCAATCCGCACCTCCTGTCGCCCCGGATTGCCGAACCGGCATTCGCGCGTTCTCGTCGGCTGGTCGCGCACTGCCAGACCAAAATAAACGAGGCCCACCGGTTTGTCGGCCGAGCCGCCGTCCGGTCCGGCAATGCCGGTGACGGAAACTGCAACATGCGCGCGGGAGTGATTCAGCGCGCCTTCCGCCATCGCGCGCGCAACTTCCTCGCTCACCGCGCCGACGCGCTCCAGCATCTCTTCCGGCACGCCCAGCACGTCGCTCTTGGCAACATTCGAGTAGGTGACATAGCCGCGCTCGACAGCCGCGGAACTGCCGGGCACTTCCGTCAGCAATCCGGCAATCAGGCCGCCGGTGCAACTCTCCGCCGTAAC # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGTGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 472214-472790 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZPO01000004.1 Hyphomicrobium sulfonivorans strain S1 NODE_2_length_702361_cov_24.2744, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 472214 29 93.1 32 ............T...............C GAAGAGATGCTGCCGTGATTTCGAGGGGTGAT 472275 29 100.0 32 ............................. TACGGTCAGCAGTTCGCCGTGCCGACCGAGCC 472336 29 96.6 32 ............................C TCTTTCGCCTCGATAGCGCGCAACAGCGTCTG 472397 29 100.0 32 ............................. AGCCCCACGCGGGGGCGGTGTGGGGCTACTTG 472458 29 96.6 32 ...............C............. CACGAGGGCGGCACGCCGGTCTGGAGTTCGGC 472519 29 93.1 32 .......T....T................ CATCGAAGCGCAGGAGGCGCACGCAGCATGAA 472580 29 100.0 32 ............................. TTCATCGTCACCGATTACGCAGCCGCTCTCGC 472641 29 100.0 32 ............................. CTCGGCTTACCTGTCATTGCGGCGAATGAAAC 472702 29 93.1 32 .............A.......T....... ATTCCACTCAGACGTGGAGCGGTCGGGGTCAC 472763 28 86.2 0 .......................-.T.TC | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.9 32 GTGTTCCCCGCACGCGCGGGGCTGAACCG # Left flank : TCGACCATGGAATGGCTGGGCCGCTATTCGATGACTGACGTGATGGTGCTGGCGCTGATGATCTTCTACGTCAATTCGTCCGGCTACACGGAAGCGGTGGTGATGCCGGGCGTCTACTTCTTTGCGGCCTCCGCCATCATCACCATGCTGGCCTATGGCTGGGCCAACACCGTGCCGCCGCGCGGCAGGGCAACGGATGCGGCTGCTGCGCTAGCAGCGGCCGATGCCTCACCGGGCGATCCAGTTGCCACGCCATCAAGCGGCGCGCGTCCATCCGGTTCCGCTTCGCCTGAGATTGCATCAGCGCACGCGATACAGCCCGCAACCACAGCGCCCACAAATGCTGCCGGTCAGGTCGTTACACTGCCCACCAACCCCGGACGCCGCTATCACCCAACCACCGAACCGGCGGAATAACAACGAAACTTGAACTGCGTTCAATTCGGTACCGTTCTTTGACATCGGAATTTGTAATTCGTACCAATGGGTTGCAGCGAAGA # Right flank : CCCGGTGCGAGCTGACGCACCGACCACAGGCTGCCCCTCTCGCGAATCTCAGCTACATTCGCAACCGGCGTCGCCTGCGCCTCCCCCCTCCAATCGGGAAAGCACACTGCATGCAGGGCATTTTGCAAAATCGCGAACCGACCTGTCGGGCCTTGCATAAGGAGGGATTGCTCGAACTGCCCGCTACAGGAGGTTTTCGACGTGTCCCTCTCCGCTCCGATCTACGTGCTCAAGCGCAAGGCAAAGCAGCTCAGTCGCGCCAGCAACATCCCGCTTCACGACGCGCTCGATAGAATAGCCGTCCAGGAAGGCTTCACGCGCTGGAGCCTGCTTGCAGCGCATGCAGCGTCGGTCACTACGGCGGCAAAGCTGTTTGCGCGTCTGACAGCCGGAGATCTGCTGCTCATCGGCGCCCGCCCCGGCCAGGGCAAGACGTTGCTGAGCCTGCAACTCGCCGTCGAAGCCATGCAAGCGGGCAGGCGTAGCGCTTATTTCACGCT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGCGCGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //