Array 1 5704-4873 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNT01000115.1 Geobacillus stearothermophilus strain P3 contig_115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 5703 38 100.0 36 ...................................... TGCTTATGCTGATTGTATACGGTCCGAAAATCTATT 5629 38 100.0 34 ...................................... TCGCTGTACTAGATGTAATTACTGCATTCAAAGC 5557 38 100.0 35 ...................................... TCAACAGCACGGTTGTATTCTTCCGTTAGCTGCTT 5484 38 100.0 33 ...................................... TGCTCTGTGATCCCCATGTCCAAGAGCTTTCGG 5413 38 100.0 35 ...................................... AGATCCGTATGACAGGAAGCGCAAAAACAGTCACC 5340 38 100.0 32 ...................................... TCAATTTTTCCAATTTTAAAGTTATATTGCGC 5270 38 100.0 35 ...................................... ACAGTTCGAACAGCTCAAAAATCAGATGGCCCAGC 5197 38 100.0 34 ...................................... ATCCGATTGTCATTGTTTATCCCCTTCCTTGTCC 5125 38 100.0 34 ...................................... TCGTCCAACGTTCTAAAGGATTAGGCGAAAATAC 5053 38 97.4 33 .....................................C CGCTCGCTTGCCGAGCTGTCCGAACCGTTGGCC 4982 38 100.0 34 ...................................... CAAGGAAATTTGCGCTATTATCGACGACGTGTCC 4910 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 12 38 99.8 34 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAACA # Left flank : TGATGTAGAAACATTAGAACCAAGCGGTCAAAAACGGTTGCGAAAAGTGGCGACCATTTGCCAAAATTTTGGTCAGCGGGTGCAAAAATCAGTGTTCGAATGCAGCGTTAGTCAAGCGCAGCTAGAAGAAATGGAGCATCAATTGTTGCGCGTCATTGACTTGGAAAAAGATAGTTTGCGGATATATACATTGTACGGCAGCCGGTCAAAGGCGGTTCGTGTCTATGGAAAAGATTATTACGTTGATTATAATGATCCCATCATTTTGTAATGACAAAGATGACAAAATGCCGATGATATGTGCGGCAAGAAGAGAATGATGCGCGAACATAAAGCGATGCTGAAAAAGAAGGGGGATCGCGATGGGCGGAAAAGCTGGTTATAAAGCCGAAGAGGGAAAATGGATCTGTGATCATTATGACTTTGCCCCAAACAGAATGCGTAAGTTCGCGTTTTTATATCTTGAAATGCGCTCAACACAAGATATCTAAACGCGGGCG # Right flank : AATTTGGTCAGGCCAAGCAGGAATTTGCCGCTTGCTGTCGAATTCATGTTCACGAAAATTGTTGCTTCACCTTTTCCACATCTTCTTGAAACTTCTCATGTGTTTTCGCCAGCACTTCTTCGAAGACGCCGTCGAGCCGCTGTTCGAGGACGGCGATTCCTTCCCCGGTGATTCCGCCTTTGACGCACACTTTTTCCTGCAGCGTCGGGAGCGTGTACAAGTTTTGCTTCATCAATTCCGCGAAGCCGATGATCATGTCGGTCACCAGCATCGTCGCCTGTTCTTTCGTGATGGCGGTTTTGGCCGCTGCGGCGTCGATGAAGCGTTGCAGCAAATAGCTGAAAAACGCCGGACCGCAGCTGGAGATGTCGGAAGCGACGCGGGTGATGGCCTCATCGATATACACCGGCGAGGCGATGCGCCGGAGAAGATCATCGATCGTTTGCCAGCAGTCGGCCGAACAGCGTGATCCGATTGTGATGAGTATGCTGCCGGAGAGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.40,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 227-971 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNT01000296.1 Geobacillus stearothermophilus strain P3 contig_296, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 227 29 100.0 35 ............................. ATGAGTTTTCTCAATGCCCCGGCAATCGCATTAGC 291 29 100.0 36 ............................. CTGTCCAGGCTCAGCTGATGACTCCGACGACAAACG 356 29 100.0 35 ............................. CGATAGGATTTTGTATTCCTTTTTCATATTCTATT 420 29 100.0 40 ............................. GCACAAAAGAAGAAGAAAGCCGCGCCGAAGAAAAAGGCAA 489 29 100.0 35 ............................. TCATCATCAATATAAAAGAGGGGCGCTTCATGCGC 553 29 100.0 36 ............................. CGGTTCAACCGCGACAACGGCAGCGCGCAGTTTTTC 618 29 100.0 35 ............................. TATCATCATCAATATAAAAGAGGGGCGCTTCATGC 682 29 100.0 37 ............................. ACGTCTACACCGTTATTGAGTAAACGAAGCTCCCAGC 748 29 100.0 35 ............................. ATGTTTTGGTCTAATGTATGATTGAACGAGATTAC 812 29 100.0 37 ............................. ATGACGGTACAAAAATACAATTTCGATATTGACATCG 878 29 100.0 36 ............................. TTGATTTGTTTCGTTACGGCTTTGCGAAAGTCTAGC 943 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ======================================== ================== 12 29 99.7 36 GTTTTATCTGAACGGAGTGGGATTTAAAG # Left flank : TTCCACGCTCTGCATACGTTTGGACGTCAATGCCAAAGTCATGAAATTGGATCACGTCCTCCTCCCCCTCCTATGAACCGATGGATTTTCTCTTCCGAAATAATTCACAAAAAATTTAGCACATTCTTTCAGAAAAGGGGAGAGGGCTTTCTGAAGGAATGTGCAAAAAAATGTCTCTTTTGTTCCGAAATAAAGTGATAATTTACATGCTTGGTTTTAAACGAGCG # Right flank : TTAAAGCCGATGATAAAATCCCCAATATAGCCGGAATAAAATTCCCCACTTACAATAGAACCATAGTGTCAACGAGAGGAGCTATGGTTCATGATTACGAGAGGGGAATTTTTTATGATCAAAGAGATGTATGAAAGGGGAATGAGTATTTCCGATATTGCGAGGGAATTGGGGATCGATCGGAAAACCGTCCGAAAATATAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGGAGTGGGATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 225-520 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNT01000054.1 Geobacillus stearothermophilus strain P3 contig_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 225 30 100.0 37 .............................. ATAAGTGAGAACCGTGAATTGAGGAGTAGCTTTTTCC 292 30 100.0 39 .............................. CTCGATTGTTGCGACTATGCCACTTACCGCGCTCGTACG 361 30 100.0 36 .............................. CACCTGCGGAGTGGGTAGCGGCTTTGCAAGAAAACC 427 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 492 29 73.3 0 ......G...CG.....A..A.-GC..... | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 94.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CAGCGACGCGGAGATCCAAAGGGTGCATCGAATACGCTTCTCCCCACGGAAGGAAAATATACCCATCCGTGGCCGCGAAGCGCACCCTAGGTCTGTAAGATATCCACAAAACTGAAAAAGGATGTAAGGGATTTTGTCGAAAAATATTTTTTGGACACCCCTGAGGGGCCGAAAAGCCTTGATAAATCAACATTTCTAGAGGGAGGAATAATGATGAAAGGCATG # Right flank : CCCTCTTCAATGTCACGCCATCGTATGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGGCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACCAGGCATGGTTGTTCACTGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACAGGGGTGGGATGGATGCGCCGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAGTCACCGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGGGAAGATATGAATGAGC # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8910-11405 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNT01000005.1 Geobacillus stearothermophilus strain P3 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 8910 30 100.0 35 .............................. TGATAAGTCAGTCCGGCGATTTCCCGCCAATCCGG 8975 30 100.0 35 .............................. TAGCGCCACAACAAATAACAGCGACACTGTAAAAA 9040 30 100.0 36 .............................. AATCGTGGGTGTTTGATGAAGTCCTCCCAACCATCC 9106 30 100.0 38 .............................. TTGGGGATATCGAAAAATACCGCTTCAAAGGCGTGATT 9174 30 100.0 35 .............................. GCGCGATCGTCAATAACAGGTCTTTGCCCTCGTTC 9239 30 100.0 36 .............................. GTAATCGTTGAAGTGACATAACCATTCCTCCTTCTG 9305 30 100.0 36 .............................. GTAATCGTTGAAGTGACATAACCATTCCTCCTTCTG 9371 30 100.0 38 .............................. GCTGTTCCGGTTGGTGATGCTTGGGCGAATCCGTACAC 9439 30 100.0 37 .............................. TGGACAGTGAATTTGCGACGGGCGTTTTCGCAGTAGA 9506 30 100.0 36 .............................. ATTTCGGAAAAGCGGCCTGATGTATGCTCGAGCCAA 9572 30 100.0 35 .............................. AGATACAACAAACGTAAATCTTGATCCGTGAGTTT 9637 30 100.0 39 .............................. ATTCGCTCGCGCTTCAGAACAGGCTCAATTTCTCTCGCT 9706 30 100.0 38 .............................. CTCGCTTCGCACTTGCTTTGGTGAATCGTTCAATTTGC 9774 30 100.0 35 .............................. TCATACCCTCACCCCACTAAAACGCAAGTGATTCC 9839 30 100.0 40 .............................. GCTGGTTGTAAATCTCCATTTTCACGCGATAAATCTCTTT 9909 30 100.0 35 .............................. TCGTTTCGTCTTGTTCGTTGTCTCTGCTCCGCTAG 9974 30 100.0 38 .............................. AGTTGCTTCTCGCTCGCCTTTTGCGACACGCCCGCCTC 10042 30 100.0 36 .............................. TTTTACCCGGCCGCTTGGAAGTCACTGCACCAACAT 10108 30 100.0 36 .............................. CCTAGAAGAAACGCTGACTATTATAAACAAATCGCC 10174 30 100.0 36 .............................. ACCAACGTATTTTTTCCAACAATACACGCTTTGCAA 10240 30 100.0 34 .............................. CGAGATGACGCAACCATTCCAACCAGAGCGACAG 10304 30 100.0 36 .............................. ACAAGCGGATCGACTGCGGCTTCGTTGCCAATTTTA 10370 30 100.0 36 .............................. CTGAAAACAGGGTGTATAGAGGTTTGGCACGAATCA 10436 30 100.0 36 .............................. TCATCGTCGTAATCTTTTGCGTAGCGAGGCGCTCCG 10502 30 100.0 35 .............................. CGGCTTCAAAAGCTAAACGAGCCAGACCCATCGTA 10567 30 100.0 36 .............................. TTTCATCATCACATGCGGTTGAAATTCGATTGATAC 10633 30 100.0 37 .............................. ACCGCTATGTCGAATTAATCGAAACCATCAGCCGCGA 10700 30 100.0 36 .............................. CAGTTAGCACAAGAAACGGATACATCAGGAATGGAG 10766 30 100.0 41 .............................. GAAGCCACCCGTGGCGATGACATTGTGGTTGTCACGGTCGA 10837 30 100.0 37 .............................. ATTGGCAAACGGACGAGTGACGGCCAGCGTAAATGTG 10904 30 100.0 39 .............................. ACAACGCATGGGACAGTATTAAAAGCTTCACATCGTCTA 10973 30 100.0 39 .............................. ACACAAGAACAATTGCGCATGAAAGACCGACGGATGATT 11042 30 100.0 36 .............................. GTTCTCAATGTGCTAATCACTCAATCGCGGTGAGCG 11108 30 100.0 39 .............................. AACTGGGGGAAATACAACCTCACTAAAGGCGGCAAGCCG 11177 30 100.0 37 .............................. ACAATCCGCAAACAGCGAACGCCGAGGGGTTCTACAA 11244 30 100.0 37 .............................. GATGTTAGGAACTAGCTTTTCGTTGCCCATGATTTCT 11311 30 100.0 36 .............................. CCTGTGACAATCCATTCAAAGGCTTCCATTTTCTCA 11377 29 90.0 0 ....C............A.......-.... | ========== ====== ====== ====== ============================== ========================================= ================== 38 30 99.7 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATTTGCGGCGATCTGAAGAGGAGGAAGCAAAACGGCGACACGAGGGGAGCCAAATGGAAACGAAGGAAGCAAAGCGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGGATGGAAAAGGGAATCCAACAAGGAATCGAACAGGGGTTAAAGCAAGGGATGAAGCAAGGACGCCAAGAAGGGATCGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGATACGATGTCGACACGATCCACGAACCGACCGGACTGCCGATGGAGAAGATTGAAAGGATGAAGGGGTGAGATGGTCCTTCGCCGTCAAGCCCCACATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAATCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGG # Right flank : CCTGCGCTAACGTCATAAAACGTTCGGCGCTTTTTTGTTTTCGCCGGACTTATGGGGAGTTGCATGTCTTGTAGTAGTATCGTAATTATGAATTTTATAAAAAACAATCTCGTTTTTTATACCATTTTTTTGTCTATATGGTATAATTAGATTAGTCCAAACGATGCGGAGGGGTGATAGATTGATCGAAGCAATCGCCCGAATCGGAAAGATGGTGCTCGAGAAGCAAGGAGAAGTGTCGGTCATTGATCAGCTGGTTGAGAATCCAGGTTATCCTTCTTGTGTGCTCATTTCATTGCGTGTGGATGGTGAGGGAAACGCTGTCTGGGAAGGATGCGAGGTTGAGGAATGCGGAAGTGATTATAAGAAATATTTGTTTCGTTCCGGATCAACGCGCGGAATCAATTATTCTCCGACAGCGAGAATTACGACGATCGAAAATACATATGATCAAAAAGTTCTCGGATGGTTTCGCAAAGTGAATCGGGTGATGGATGACC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 20117-23482 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNT01000005.1 Geobacillus stearothermophilus strain P3 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 20117 30 100.0 39 .............................. TCCTCTGGACTTAGTCGCTGGGGGTCTAAATTTTTTAGG 20186 30 100.0 38 .............................. AGTCTATTTGTCTAGCATACTTTTTCGTTTTTGTCAAT 20254 30 100.0 38 .............................. CAGAATACCAAATCACTCTGTATATAAAGAACAGCTAA 20322 30 100.0 35 .............................. CTGCCGATCATAATCATAATCGCGCCGCCGGTCAT 20387 30 100.0 36 .............................. TCGACCTACTTAGACCATTTTCCCCGCCCTTTGTAC 20453 30 100.0 36 .............................. CTCGTTGAATGTGTCCATTGCCCACATGACGTAAGA 20519 30 100.0 38 .............................. TAGCGGGCCCTCGCGTTTTTGAGGTGTTTTTAAATGGC 20587 30 100.0 37 .............................. TTCTGTAGATTCATTTTGACCATAACCCGCAGGCAGT 20654 30 100.0 35 .............................. ATATTTCGAAATCCAGATTTCGCTTTTCACTACTC 20719 30 100.0 35 .............................. CAAGTTTACGGAAGAGCAAAGGAAGCGTGTTTCTG 20784 30 100.0 35 .............................. AGCTGAGTGTCAGCGAACTGGGAGTTGAACACGTC 20849 30 100.0 36 .............................. TTCCATGATTCAAAATGCTGGCATCGGCTATATCTT 20915 30 100.0 37 .............................. CTGCATTTTTGGGCCGTCGTCGAATCACTGCTCCGGC 20982 30 100.0 41 .............................. ACGGTAAAAAGCAATTCGTTTTGCCGCTTTCTTTCCGGCTT 21053 30 100.0 39 .............................. AACGCTCGTCTTGGATGGAATAGTTCGTTTCCGTCATCG 21122 30 100.0 34 .............................. TGGGTGCGCAAGGTGTTATCCGTCTGTACCGCGA 21186 30 100.0 36 .............................. GGAGTGAGCAACGCTCACCGAAGAGCAAGATAGAAA 21252 30 100.0 37 .............................. GAATGGAATCGCCCCATCTTCCATCATCGGTGGTACA 21319 30 100.0 37 .............................. AAGGCTACAACAATATATGAAAGCGATACACCATTGT 21386 30 100.0 35 .............................. AGTATCTGTATCGTCTCCTGCGTCGCCACGTACGC 21451 30 100.0 36 .............................. ATCAATCGCCTGAGCAAATCGCCATTTCCGCATCCA 21517 30 100.0 36 .............................. TTCATAACCATACCTCCTACATTTTGTTTTTGTTGC 21583 30 100.0 36 .............................. ACAGAACAGACGAGAAAGGGCATCAAGAAGTACGGC 21649 30 100.0 36 .............................. CCTTGCTTCGGCTTCTGATGATGTAGCGGAATTCAT 21715 30 100.0 37 .............................. CTTTGGCGTTTCTTCTCTACCTTCATGAAAACATACC 21782 30 100.0 38 .............................. CCTAGGAAAAAACGGAGTTTCGCAAAGTACATTTTTAG 21850 30 100.0 39 .............................. ATATAAGTATGGTCATGATAGACTCTTGCATACTCGCTG 21919 30 100.0 37 .............................. GAAAAATTTCTTGAGTTGCTGGAAAGAAGGAGTGATA 21986 30 100.0 35 .............................. TATATCAAAGAAATCTTCTCGCTTCACTGAATACC 22051 30 100.0 36 .............................. CGATGATGTTCTTCACACAACGGCGCAAGGTTTCTC 22117 30 100.0 38 .............................. TCAATTGCAGACATAAAAAATCTATGCTAGACTTGGAA 22185 30 100.0 36 .............................. GCACGCCGCGCAATTGGAAAATTCAACGTAACCGAA 22251 30 100.0 37 .............................. GCAGTCACACCTGCCACCTTCACCACAGGCACTGATG 22318 30 100.0 35 .............................. AGATCTGTGAAACCTGTGCCAGCGGAGAGAGAGCT 22383 30 100.0 38 .............................. TGGTCCCGTAAAAACGGGACAATGCCGCGTGGGAACAC 22451 30 100.0 35 .............................. ATCCCGTTCCAAAGGTAACCAAACAACGAAAAGAA 22516 30 100.0 35 .............................. ACACCTCGCTCGTGTGGTGCCGTGGACGAAGCACC 22581 30 100.0 36 .............................. AAATCCAACGTCTTGCTCCTCCTTGATGCAAATTGC 22647 30 100.0 37 .............................. AGTTCTTTGGTGTGCCAACAGACGAAGATGACCCGGA 22714 30 100.0 38 .............................. CTCGATGCAAACGGAAATGTGTTGGACGAGCGAACCGA 22782 30 100.0 41 .............................. CCAAAGGAAAAGGCTGGCATTTGATGACGAATGCGGAGTGG 22853 30 100.0 35 .............................. TAACCTAAAGAGAAAGCGTAAGCGATGGCTTGTAG 22918 30 100.0 37 .............................. CCTGATGGCTTCGCAGCAAGCTGTGAATGGCCTGACC 22985 30 100.0 40 .............................. CGTCGCGCGGCAATGACTGAATACGAACAATCTCGTCCGG 23055 30 100.0 37 .............................. ATGTACAGAATGTCATTTTTTGATGTTTGTAAAATTA 23122 30 100.0 36 .............................. ACCGCTATCGAAGCCTTGTATCAACCTTTCTGTGAT 23188 30 100.0 35 .............................. CGTACTGATTATTCCAACATTGGCGGAGGATTTGA 23253 30 100.0 38 .............................. GAAGTCACACCACCAACGTGCGGCTATCGGTTCGACGC 23321 30 100.0 36 .............................. GAGGGCTTTTTTCTTCCCGCACCGGGCCGCCAACGA 23387 30 100.0 36 .............................. AAAAATGTAGTGGAAAGGAAAATTTTTTCAAGCTAC 23453 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 51 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAAACGTTCGACGGAAGAAAGAAAACGCAATTTTTTGACCCCGATGATGAGGTGTTCCCCCACCTGATTGAATTGAATTTCCGTCATAAATATGAAGCGTACTACGGCGTTCCGCCGACGGAAAGACTGTTGATCGAGCCGGTTCACGTTCATCATCGTCATCGTGTGGTGACAATGTTCAAGAATATGTATATTACAGGGTGGCTTGGCTATTACCGCCTCTGTTCTTCACCAGAACAGTTGACATTTTTATATCATGTCGGTCTAGGTGGCCGAAATTCACAAGGATTCGGCATGTTTCGCCTTAAAAGCGAATAAACGGGTCAAGAGATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAAGCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGG # Right flank : CAATTTGATTTTTATAACCGTACAAACTTATATATGTTATCACGAGTGTTGATTATCCAAAATTAGACATACGCCTTCCATAAATTTGGGCATACTCAAACAAAGCAGCGGCCATCCCGGATTTCCAATCGAGAGGAAGCTGCCCAGAGAAAAAACGGCGAACGAACGAAATGAAGGAAAGAGAGACGTTCGTCTGTTTTTTGGTTTGATCATACAGCCATCGCAGCAACACATACGCGATGAACGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4575-219 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNT01000147.1 Geobacillus stearothermophilus strain P3 contig_147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4574 30 100.0 35 .............................. ATCGTTTCCATTTTCATAAAAATCATCCTCCCTAG 4509 30 100.0 36 .............................. GGAGTTTGCCTGACAAGATTCCGATTGTTATCCCGA 4443 30 100.0 35 .............................. CTATACCAGTCTCTATATCCGATATCCCGGATATT 4378 30 100.0 39 .............................. TAACCAAGTGTCCACGGCATCGCGATCTCGTCGTCGAAC 4309 30 100.0 36 .............................. GGATTTTATTAGAGAAGGTTTGCCTCGATTGACGGA 4243 30 100.0 36 .............................. CTAGATAGATATAAGACAGAAATATCGAGGCTCGGC 4177 30 100.0 36 .............................. GTTTTTCATAGCGATCCGTCTTTTTCGACGGTTCGA 4111 30 100.0 36 .............................. ACATAATGATTCCTCCTTACCACACGACCGGATGGA 4045 30 100.0 39 .............................. CCGGCGACAAAGTATAGCGGCCGCGTTTTTCCGAAAAAG 3976 30 100.0 37 .............................. AAAGAAATGGCCGATAGGATTACCGAGTATGCAAAGA 3909 30 100.0 35 .............................. TCCGGAAGCCCCTCAACATTCGGAGCCGGATCAAT 3844 30 100.0 36 .............................. ACAGCGCCTGCAAGACAAGCGTCGACACGACATAGA 3778 30 100.0 36 .............................. TATTTCATTCGGGAAACCAAGGCGTTCCCAAAGAGC 3712 30 100.0 35 .............................. ATATAAACATCAAAAAAAAAATTTGCGCCCTATAG 3647 30 100.0 38 .............................. AAAAATGTAGTGGAAAAGGAAAATTTTTCAAGCCACAA 3579 30 100.0 37 .............................. CGAACCTCATCATTTCTCAACTCCTTTTTTGTAGTCT 3512 30 100.0 35 .............................. TCAGCTAAATATTGTACAGCATCCGACAGCATCAC 3447 30 100.0 36 .............................. GTAGTAGAAGCGAAAAAGTATTTTGAAGTTGACGCA 3381 30 100.0 37 .............................. TCCCCGTTCCGAACATCAAAAAAATCGCGCCAATCCG 3314 30 100.0 35 .............................. AGGAATAGGATTCCCTTCCACGTAATAAACATCCG 3249 30 100.0 37 .............................. CACCTCCGGTATTTCAGTATGATCGCAACGGCATCAA 3182 30 100.0 38 .............................. GCGGTAGGGAAATGCGGTATAGATAGCAAGAATATGGG 3114 30 100.0 37 .............................. TATCACGCTTTTGAAGAAAGAACGGAAAACGACTAGA 3047 30 100.0 37 .............................. GTTTGTGATGATGCCAACTATACGGTTGACGTTATTG 2980 30 100.0 35 .............................. AATAAATCATCAGGACGATTCAAAGGCTCAACACC 2915 30 100.0 35 .............................. ACGTACGTGCCTTTTGCTATTGATTGCTCAAGTCC 2850 30 100.0 36 .............................. CATCGCTAGTTGAATACAATAGCGGATTGCTTCGGA 2784 30 100.0 37 .............................. ATTGCGGAGAAATCGACAAAGAAGTCGAAACATGTCC 2717 30 100.0 39 .............................. ACTTGTAACCTAATTTCGTAAAGATTTCCGACCACACCG 2648 30 100.0 35 .............................. ATTCCTGCCATTTTCACTAAATGGTACAAAACGGT 2583 30 100.0 36 .............................. CTGCAACAGGCATAGCAGAACGGGCAACCTGTCTAG 2517 30 100.0 40 .............................. AATCATCAAGACTAAAGATCCTCATCGTGTCATAGCGATT 2447 30 100.0 35 .............................. TAGAAGAGTCATAATCGCTACGCTCATCAGCTGCA 2382 30 100.0 39 .............................. GCTGTACGGAACTGACTAGCAGAACGAAGTGCACGTGCA 2313 30 100.0 37 .............................. GCTGGAACGTCGATGCAAAATGGAAACGAGTTGCCGC 2246 30 100.0 37 .............................. CTACTTGAACAAAAAGGGGGCGGAAATGGTAGGTGGA 2179 30 100.0 37 .............................. CTCTTGCAGATCATCATCATCTAACGGCGACACATAA 2112 30 100.0 37 .............................. GATAATCTGACCAATAAACCATTTGACCCCGAATTCC 2045 30 100.0 37 .............................. CCACTTGTTGAATATTCAGCAAAAGATTGCAGACCGA 1978 30 100.0 36 .............................. TAGTACTACAATTTTATCTAGATGTCAACTACTTTT 1912 30 100.0 39 .............................. CGCATAATTGAACACTCTCCTTTGTGATTAATTTTTCGT 1843 30 100.0 37 .............................. TCCAGCATGACAACCACTGTCCCGCTGGATTCACGAA 1776 30 100.0 36 .............................. GCTACCTGCTTCATCTTGCCCGTGGAGTGTTCGATC 1710 30 100.0 37 .............................. CCGGAACAGCTTACTTAAAACGCCAAGGAGTGGGCGA 1643 30 100.0 39 .............................. GGTAGAATCACAATTTCGGTTCTCCATATACTTCCCGAA 1574 30 100.0 37 .............................. TCCAGCATGACAACCACTGTCCCGCTGGATTCACGAA 1507 30 100.0 37 .............................. GCATTTTTGTTACCATTTGAATTTGATTCATCATGAT 1440 30 100.0 38 .............................. TCTCTTTTCAAAGTGACGATGTTCATTTATGCGTACAA 1372 30 100.0 38 .............................. CCCAATGATCGTAAGGAAAAAGCAACGCCTTTGCGTTC 1304 30 100.0 36 .............................. CCATGATGGTGATGATGCAGCGATTGCAAAATTTCC 1238 30 100.0 36 .............................. ATACGCTCGAGCAATGTTGCTTGGTCTGTTATTTCC 1172 30 100.0 36 .............................. GATGCCTCGATCGGTACGCTGATACATCTTTAGAGG 1106 30 100.0 35 .............................. CGTTGCAAGTGGAGATTGGGGAGCTCGCAAATTGC 1041 30 100.0 37 .............................. ACGGCCGCATACGGCAATATGCACGACTTGCGGAAAG 974 30 100.0 35 .............................. TTGTATGACACACCAAAACTACAAGTAACTAGGGA 909 30 100.0 37 .............................. AGCTACCTAGTTTTCAAGGAGGTGTAATGATGTACAT 842 30 100.0 36 .............................. TTCGGCTTTTCGGAGTGCATATATATCACTTGATGC 776 30 100.0 39 .............................. TTTCGACGTGAAGATGGACAAGCCGTCTACCGCTATGAG 707 30 100.0 35 .............................. TCCGGCTCCGCACCAAATATATTCGGCGCGGCGAC 642 30 100.0 37 .............................. AAGATTAAGTGTAAGTATTCACGTTTTGGTTTCTCGA 575 30 100.0 36 .............................. CCATCTCCTTATCTCAATATCATATTACATCAGGAA 509 30 100.0 35 .............................. TCGTGAATTGTACAAGATGATTCCAGCGCTTCGCA 444 30 100.0 35 .............................. ATGCCACACCAGATGAAATCAGCTTTCCGGTTCTC 379 30 100.0 35 .............................. TTGGTAAATGTATGAAGTAACTCCACACCATACAC 314 30 100.0 36 .............................. CGTTCATAATTCCCGCGACAAGGTCAGCTTGCAGGC 248 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 66 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTGATGATTGTGGAATTGAACTTGACAGAGATCGAAACGACAGTATCAATCTTTCGAGATATCCTGCATAGCGACTGGTACCGTGAGTTGCATGGGAAGTGAAGCCTTCGGAGCGTCAATCAAACGAGAGCAGTTTCGGCGAAATCGGACAAGGATCAAGCAGGGAATGAAGCATGGGATTGAACAAGGACGCCAAAAAGGATCGAGGAAGGGAAACCCGACATCGCGAAGGAAATGTTGATGAAAGGGTAGGATATCGACACGATCCACGAACTGACCGGGCTGCCGGCGGAAAAGATCGAACAGCCGAAGAAGTCAACCCGCCTTTGCATTGTCGTCGACCTCCAATCATGCAAAAAACCCGGGGGATCGACGACAATGGTTTTTGACGCTCCAAGCCTACAGCCATCACGATTGAAAGTCATTGACAGAATTTTTGAAACGTGCTATGCTGAAAATAGCTCCAAACCGAAAAGCTTGATGGAACAAGCCTTTTTGGG # Right flank : CTAATGAAGCTAAAGGAGCATTCCCGTTAGGAGCTTTTCCGGGGACTTGATCAAAAAAAGCCCTCTTGGTATGATGCAGGGGTGTCAAACAATACCTACCATCATGCCAAGGAGGACTTCAGATGAATTGTACACAAAACTATAAAATTGATCAAGTTACGGAACAAACGCTTGTCGTGGGCATCGATATCGCGAAACGAACCCACTACGCCTGCTTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 230-4027 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDNT01000072.1 Geobacillus stearothermophilus strain P3 contig_72, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 230 29 100.0 35 ............................. AGATACCGTCGGTTCTCATTGTGTCCAAAGACACA 294 29 100.0 36 ............................. GAATGTTGCGTTGCAAGATGAGGAGGTACCGATTCT 359 29 100.0 36 ............................. CGGCGATCGGATTTCAAACCATTCCGCTAGCTCGTT 424 29 100.0 35 ............................. AATCACCGCAGCTGTTTGTTCTCCCCATCTTACCG 488 29 100.0 37 ............................. ATTTCAACAGCTTTTCAGTCTGCCGCTGGCGATGTTA 554 29 100.0 34 ............................. TTATGATCGTCATCTAAAACGATAAAGTGAACAG 617 29 100.0 37 ............................. ACAACGGCCGCTATTCCTTGAAGCACGTTTACGGCAA 683 29 100.0 35 ............................. GGATTCAACCGGAACAAATCGTCAGGCTTATTCAA 747 29 100.0 35 ............................. GTTCAGCGACTCGATGCTATCACAATGTCGTGGTT 811 29 100.0 35 ............................. GCACGGAGCGGCGATAGACAACAGGGGAAGGGTAA 875 29 100.0 38 ............................. CAGTAAATCCAACTTTGTTTCTATTCTCTCCACACTTT 942 29 100.0 35 ............................. TGTTTCCTGTTTCGCATGTTGCTCATCTCCTACAA 1006 29 100.0 35 ............................. GCTTGTGCCGCTGTGGTTTGACGGCTTGTGCAATA 1070 29 100.0 39 ............................. GGGGATACCAACTCTAATCCTAGTCCAGCAGATCAAACA 1138 29 100.0 39 ............................. AAGATGTTCGGGCAGCTGGAGTAAAGGAACGTCATTTTG 1206 29 100.0 36 ............................. GAAGCCCACGCAACACAAGCCGCGTGATGAAGGCGC 1271 29 100.0 38 ............................. GTTGACGGAATGACATGCGGTTTGTCGCGTTCTTCCGG 1338 29 100.0 35 ............................. CGCAATACATTCCATCTTCAAAGTAAACAACCCAA 1402 29 100.0 36 ............................. TGGCTCAACAACATCGCCATTACGCAACGCCTACCT 1467 29 100.0 35 ............................. GGCGTTTGCGCTGGCATTCCGGACATCTCTTCACC 1531 29 100.0 38 ............................. TGAACCGCTTCCGGACGATTATCAGCGACAAAAAAGAG 1598 29 100.0 35 ............................. TCTGCTCCTGTGATTTCTGGCTCGGATTCTAACCT 1662 29 100.0 35 ............................. GCTTATTCGCGGATATGGGGCAAATGGTCTTGTTG 1726 29 100.0 37 ............................. GCCATGAACGCGTCACGGTCGCGTCGTGATTTTCTGC 1792 29 100.0 37 ............................. GGGCGTACGGTCTTTCTTATTCGCGCGCTGATATTGT 1858 29 100.0 35 ............................. TCCTCACCTCGCTAGACGCTTTATTTTGCTCTATG 1922 29 100.0 35 ............................. GCGATCTTCACCCAAGATGTAGAAGCGTCGTTCCA 1986 29 100.0 36 ............................. GCGGTATGTCTCCGCTTTCTCAGTCTGATTTACGTG 2051 29 100.0 38 ............................. TTGGCAAATGCGATAAATTCGTTACAAACATTTCAAAA 2118 29 100.0 37 ............................. TCACAGGCGGCGCATCCATCACATTAGCATACCTTTT 2184 29 100.0 36 ............................. TAAACGCCTTTCATGAGATTGATGTCGTCTAAATTT 2249 29 100.0 35 ............................. ATTGATGGGCGACAATATAAGCTACGAGTTCTCAC 2313 29 100.0 36 ............................. GCGTTTTTCGCCCGTGTGGGTCAGCATAGGGGTTGC 2378 29 100.0 35 ............................. ATAGTCCTCGGATTTCGTCGCATACTTTGAAAGCT 2442 29 100.0 35 ............................. CAGGCGTGTTTATTATAGTGTCCCCAAGTAAACAA 2506 29 100.0 35 ............................. CACAACCTGCTTCATATCAAAAAACAATCGAACGG 2570 29 100.0 38 ............................. TTATATGCCTCTTTTTTCTTGTCTGGATCAATAGGTTC 2637 29 100.0 38 ............................. GCTATATTAAAAATCTTTTGCCTTGGTGATCCTGCCTT 2704 29 100.0 35 ............................. GATGATCGCTCAACTCATCATACTTGCGATAAACA 2768 29 100.0 35 ............................. CGTGTTGCGCCGGATAGGACGATAGAGGACACTGT 2832 29 100.0 38 ............................. GCTATTGAATTTTGATGTAAATTTTACGCGCTTGGACT 2899 29 100.0 36 ............................. GTTGCTCCAGATGCTACAATTGAGCGTGCAAAGTCT 2964 29 100.0 36 ............................. AGGCAAACCTGGCACAGACGGAGACGGATCAAGTCC 3029 29 100.0 35 ............................. GTAGCACCAGCCACATTCCAAGTCCGATCAGACGA 3093 29 100.0 35 ............................. GACGCGTCTCCGCCGCCGTCTGTTTCATTTCACGA 3157 29 100.0 35 ............................. GTTAAAGTGAATGCTATTGATGAAGTAGATAACGT 3221 29 100.0 35 ............................. CGTCAGCGCATGCCCACACGGGCGTTTTTCGCCCG 3285 29 100.0 35 ............................. ATGATCTCCGCAAGTAAAAAACCGCGTCGGGATCT 3349 29 100.0 38 ............................. TATCACGGTGGTACATGCCCGTTTAACAGAAATGATTG 3416 29 100.0 36 ............................. TCTACAGGCACCATCGCATCGTTTTGGAAGATATAT 3481 29 100.0 37 ............................. GCTATTCAGGTCTCACAGAGTGATGTGCCAGATATTT 3547 29 100.0 35 ............................. GATAAGTTTGATGCAGAAATGGCTTGCGTTTTATT 3611 29 100.0 35 ............................. CGTGCCTTGACGCTGGGGGGTCGCCCCTGCTATGC 3675 29 100.0 36 ............................. TTATATTATACTTAACTATATATTATCTATCTTCCT 3740 29 100.0 37 ............................. GGTGAAGAACTTTGCCCATAGACGTTGTTCCGGTCTG 3806 29 100.0 36 ............................. GATGAATGCGCTTGTTGAACAGTCTAATAATGTTGA 3871 29 100.0 36 ............................. TGACGTTCGCGATGAACGTCACGGAGCACCAAGATG 3936 29 100.0 34 ............................. TCGGAACGCCTCTTCTCGTTTCTTGCGGTTGCCA 3999 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 59 29 100.0 36 CTTTAAATCCCACTCCGTTCAGATAAAAC # Left flank : CACGAAAGGGGCCGAATCGGCCTCTTTTGTGCTTTCTCTTTTCCATAGGTCCATCAGGCGCGCTGGAAATCTTCATCTGAAAGAGCGTGCAAACGTTCCGAAAGAATGTGCAAAATCCGGAACAATCCGCAAAAATTTTGCACATTATTTCCGAATCCGCCTGAAATAATTTGAAAAAGGGATTCTGAAATAATGTGCTAGTTTACACAAGCAGCTTCCTCGTTGAACGC # Right flank : CCCCTATCAGTTACAAAGCAATATTCATTGATGTAGCAGGGAATTCCGGCTAATGCCTACACAACAATTATACCTCATTTTGCAGTAAAGTAGTAATTGTGTTTTCTATGCTACACAAATAATGACACACTTCCCTTGATAAATCAAGCTTTTCCCCATTTATCCGCTAAAAGGAGGTTCACTGCAAATTCTTAAACTTAAAGGAACAACTCATCAAAATTCTTTTCCTGACCAAATACCCGCTTTTTTATATTCTTCGGATTTTCTACTTCGTATAAGTAAATGGAGTCTTCTTCTTTATCAATGATCATCTCCAATTCATACATGCACTTCATCAGCAGACTTTTCGAAATCTCCCCTTCAAATACGCTATTTTGCGTCCAAGTGAGATATTCCTTTAATTTTTTGCAAACTTTGTTGACCCGCTTCTCCGCTACGTCATACGTAATGATAACAAACATGGCTCACCACCAAGCTTTCAACGGTTTATATCGTTCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAATCCCACTCCGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //