Array 1 6438-7564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXL01000039.1 Escherichia coli strain F5995 Contig0000039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6438 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 6499 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 6560 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 6621 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 6682 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 6743 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 6804 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 6865 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 6926 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 6987 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 7048 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 7109 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 7170 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 7231 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 7292 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 7353 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 7414 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 7475 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 7536 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCTGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20041-19158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXL01000026.1 Escherichia coli strain F5995 Contig0000026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20040 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 19979 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 19918 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 19857 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 19796 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 19735 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 19674 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 19613 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 19552 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 19491 29 96.6 32 ............T................ GCGACCACGCAGAGCGGCGACAACCTGACGTT 19430 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 19369 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 19308 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 19247 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 19186 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //